ybhI:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46abad5459b49"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415291&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415291&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00939 PF00939  Sodium:sulfate symporter transmembrane region]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00939 PFAM:PF00939]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10283:SF13 PTHR10283:SF13]
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[[EcoCyc]]
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EcoCyc:G6400
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13665
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003000
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3429
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0002621
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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{{BacktoTop}}

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G12860 (score: 1.000; bootstrap: 100%)
  • AT5G64290 (score: 0.259)
  • AT5G64280 (score: 0.211)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001161 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000031644 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000006144 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000035160 (score: 0.440)
  • ENSBTAP00000005040 (score: 0.374)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003517 (score: 1.000; bootstrap: 100%)
  • WBGene00007138 (score: 0.263)
  • WBGene00003518 (score: 0.223)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015478 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000022664 (score: 0.383)
  • ENSCAFP00000027595 (score: 0.366)
  • ENSCAFP00000004912 (score: 0.332)
  • ENSCAFP00000005317 (score: 0.328)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000000383 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000019736 (score: 0.314)
  • ENSCINP00000007638 (score: 0.240)
  • ENSCINP00000017616 (score: 0.190)
  • ENSCINP00000019733 (score: 0.144)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2486 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3433 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3336 (score: 0.384)
  • ZDB-GENE-040426-2389 (score: 0.384)
  • ZDB-CDNA-040425-3750 (score: 0.383)
  • ZDB-CDNA-040425-846 (score: 0.334)
  • ZDB-CDNA-040425-845 (score: 0.334)
  • ZDB-GENE-031222-3 (score: 0.334)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000279027 (score: 1.000; bootstrap: 100%)
  • ENSP00000194130 (score: 1.000; bootstrap: 100%)
  • ENSP00000297282 (score: 0.461)
  • ENSP00000293800 (score: 0.416)
  • ENSP00000316202 (score: 0.402)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012550 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000028937 (score: 0.446)
  • ENSMMUP00000022045 (score: 0.410)
  • ENSMMUP00000022249 (score: 0.398)
  • ENSMMUP00000021519 (score: 0.253)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019234 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000020288 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000017491 (score: 0.438)
  • ENSMODP00000024030 (score: 0.361)
  • ENSMODP00000020748 (score: 0.097)

From Inparanoid:20070104

Mus musculus

  • MGI:1859937 (score: 1.000; bootstrap: 100%)
  • MGI:1276558 (score: 0.361)
  • MGI:3037150 (score: 0.353)
  • MGI:2149635 (score: 0.334)

From Inparanoid:20070104

Oryza gramene

  • Q768R5 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000023355 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000033801 (score: 0.328)
  • ENSPTRP00000014757 (score: 0.179)
  • ENSPTRP00000015222 (score: 0.159)
  • ENSPTRP00000040805 (score: 0.091)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000010788 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000014977 (score: 0.461)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNR013C (score: 1.000; bootstrap: 100%)
  • YCR037C (score: 0.305)
  • YJL198W (score: 0.282)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000180927 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000179051 (score: 0.503)
  • NEWSINFRUP00000181759 (score: 0.322)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00029948001 (score: 1.000; bootstrap: 100%)
  • GSTENP00030073001 (score: 1.000; bootstrap: 100%)
  • GSTENP00029947001 (score: 0.795)
  • GSTENP00014690001 (score: 0.641)
  • GSTENP00023460001 (score: 0.394)
  • GSTENP00019703001 (score: 0.351)
  • GSTENP00009235001 (score: 0.289)
  • GSTENP00030074001 (score: 0.117)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000017162 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YBHI

From SHIGELLACYC

E. coli O157

YBHI

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00939 Sodium:sulfate symporter transmembrane region

Panther (EcoliWiki Page)

PTHR10283:SF13

EcoCyc

EcoCyc:G6400

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13665

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003000

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3429

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002621

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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