ybbO:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46aba495c38f4"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415026&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415026&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00106 PF00106  short chain dehydrogenase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00106 PFAM:PF00106]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24322:SF43 PTHR24322:SF43]
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[[EcoCyc]]
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EcoCyc:G6269
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13262
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002877
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3050
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001709
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014198 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000005169 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013443 (score: 1.000; bootstrap: 55%)
  • ENSBTAP00000023258 (score: 0.093)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041685 (score: 1.000; bootstrap: 74%)
  • WBGene00030887 (score: 1.000; bootstrap: 70%)
  • WBGene00036041 (score: 1.000; bootstrap: 74%)
  • WBGene00041240 (score: 0.179)
  • WBGene00033287 (score: 0.164)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000966 (score: 1.000; bootstrap: 61%)
  • WBGene00000979 (score: 0.225)
  • WBGene00000983 (score: 0.211)
  • WBGene00018885 (score: 0.202)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000083 (score: 1.000; bootstrap: 72%)
  • ENSCAFP00000000221 (score: 0.439)
  • ENSCAFP00000000212 (score: 0.353)
  • ENSCAFP00000017708 (score: 0.305)
  • ENSCAFP00000019689 (score: 0.092)
  • ENSCAFP00000029598 (score: 0.052)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012679 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-021115-3 (score: 1.000; bootstrap: 62%)
  • ZDB-CDNA-040425-740 (score: 1.000; bootstrap: 61%)
  • ZDB-CDNA-040425-2699 (score: 0.688)
  • ZDB-GENE-040426-1759 (score: 0.688)
  • ZDB-CDNA-050522-139 (score: 0.410)
  • ZDB-GENE-050522-139 (score: 0.410)
  • ZDB-GENE-040901-5 (score: 0.191)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027583 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000011241 (score: 1.000; bootstrap: 64%)
  • ENSGALP00000011287 (score: 0.411)
  • ENSGALP00000017653 (score: 0.121)
  • ENSGALP00000008767 (score: 0.070)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000257895 (score: 1.000; bootstrap: 57%)
  • ENSP00000266988 (score: 0.400)
  • ENSP00000318631 (score: 0.363)
  • ENSP00000293502 (score: 0.334)
  • ENSP00000316670 (score: 0.286)
  • ENSP00000350914 (score: 0.085)
  • ENSP00000316786 (score: 0.056)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000017380 (score: 1.000; bootstrap: 85%)
  • ENSMMUP00000000730 (score: 0.299)
  • ENSMMUP00000018186 (score: 0.289)
  • ENSMMUP00000005015 (score: 0.216)
  • ENSMMUP00000017600 (score: 0.204)
  • ENSMMUP00000010103 (score: 0.171)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006173 (score: 1.000; bootstrap: 52%)
  • ENSMODP00000016114 (score: 0.492)
  • ENSMODP00000002613 (score: 0.406)
  • ENSMODP00000018644 (score: 0.118)

From Inparanoid:20070104

Mus musculus

  • MGI:2685028 (score: 1.000; bootstrap: 51%)
  • MGI:105077 (score: 0.133)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008612 (score: 1.000; bootstrap: 60%)
  • ENSPTRP00000008693 (score: 0.400)
  • ENSPTRP00000008692 (score: 0.329)
  • ENSPTRP00000039297 (score: 0.282)
  • ENSPTRP00000027176 (score: 0.087)
  • ENSPTRP00000014053 (score: 0.056)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000033991 (score: 1.000; bootstrap: 59%)
  • ENSRNOP00000026878 (score: 0.129)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YIL124W (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC23D31 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134374 (score: 1.000; bootstrap: 50%)
  • NEWSINFRUP00000152809 (score: 0.668)
  • NEWSINFRUP00000136645 (score: 0.459)
  • NEWSINFRUP00000128887 (score: 0.220)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015734001 (score: 1.000; bootstrap: 56%)
  • GSTENP00013747001 (score: 0.370)
  • GSTENP00022037001 (score: 0.202)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000037994 (score: 1.000; bootstrap: 60%)
  • ENSXETP00000035399 (score: 0.433)
  • ENSXETP00000035392 (score: 0.319)
  • ENSXETP00000009623 (score: 0.286)
  • ENSXETP00000009614 (score: 0.268)
  • ENSXETP00000009610 (score: 0.256)
  • ENSXETP00000009604 (score: 0.215)
  • ENSXETP00000007492 (score: 0.106)
  • ENSXETP00000007727 (score: 0.063)
  • ENSXETP00000007485 (score: 0.063)
  • ENSXETP00000032288 (score: 0.053)

From Inparanoid:20070104

Shigella flexneri

YBBO

From SHIGELLACYC

E. coli O157

YBBO

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00106 short chain dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR24322:SF43

EcoCyc

EcoCyc:G6269

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13262

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002877

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3050

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001709

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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