ybaS:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
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''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
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''Danio rerio''   
''Danio rerio''   
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''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04960 PF04960  Glutaminase]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF04960 PFAM:PF04960]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56601 SUPERFAMILY:56601]
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[[EcoCyc]]
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EcoCyc:G6261
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13247
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002869
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3036
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001688
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
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Latest revision as of 08:30, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000012231 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010348 (score: 0.418)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041999 (score: 1.000; bootstrap: 100%)
  • WBGene00034134 (score: 0.350)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007480 (score: 1.000; bootstrap: 100%)
  • WBGene00008435 (score: 0.184)
  • WBGene00009271 (score: 0.137)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000013987 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000000194 (score: 0.757)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030616-550 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000012199 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000317379 (score: 1.000; bootstrap: 100%)
  • ENSP00000310447 (score: 0.545)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007418 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000001154 (score: 0.308)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000014615 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000026445 (score: 0.546)

From Inparanoid:20070104

Mus musculus

  • MGI:95752 (score: 1.000; bootstrap: 100%)
  • MGI:2143539 (score: 0.470)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021791 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000008680 (score: 0.472)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018818 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000018737 (score: 0.696)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000176361 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000143899 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000141445 (score: 0.144)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031850001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023662001 (score: 1.000; bootstrap: 100%)
  • GSTENP00003741001 (score: 0.145)
  • GSTENP00029227001 (score: 0.074)

From Inparanoid:20070104

Shigella flexneri

YBAS

From SHIGELLACYC

E. coli O157

YBAS

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF04960 Glutaminase

Superfamily (EcoliWiki Page)

SUPERFAMILY:56601

EcoCyc

EcoCyc:G6261

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13247

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002869

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3036

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001688

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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