betB:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00171 PF00171  Aldehyde dehydrogenase family]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11699:SF47 PTHR11699:SF47]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00171 PFAM:PF00171]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53720 SUPERFAMILY:53720]
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[[EcoCyc]]
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EcoCyc:EG10110
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10110
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000106
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0108
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001072
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020207 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000013314 (score: 0.272)
  • ENSANGP00000011393 (score: 0.247)
  • ENSANGP00000021005 (score: 0.086)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000016470 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G48000 (score: 1.000; bootstrap: 88%)
  • AT1G23800 (score: 0.661)
  • AT3G24503 (score: 0.244)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000033996 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00035529 (score: 1.000; bootstrap: 99%)
  • WBGene00030825 (score: 0.053)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000117 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019790 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015053 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-27 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-28 (score: 0.993)
  • ZDB-GENE-030131-1257 (score: 0.993)
  • ZDB-CDNA-040425-26 (score: 0.508)
  • ZDB-GENE-040120-5 (score: 0.508)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231474 (score: 1.000; bootstrap: 98%)
  • DDB0201650 (score: 0.716)
  • DDB0231475 (score: 0.652)
  • DDB0231476 (score: 0.126)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0012036 (score: 1.000; bootstrap: 99%)
  • FBgn0051075 (score: 0.234)
  • FBgn0032945 (score: 0.069)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17661-PA (score: 1.000; bootstrap: 100%)
  • GA15986-PA (score: 0.198)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000005520 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000271359 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000020979 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000001595 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Mus musculus

  • MGI:1861622 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q43274 (score: 1.000; bootstrap: 77%)
  • Q94G64 (score: 0.990)
  • Q8LST4 (score: 0.916)
  • Q9LLR2 (score: 0.857)
  • Q9FRX7 (score: 0.854)
  • Q8LST6 (score: 0.835)
  • Q93XI6 (score: 0.833)
  • Q8LST5 (score: 0.685)
  • Q9LRI6 (score: 0.683)
  • Q7FWR0 (score: 0.678)
  • Q8RUR9 (score: 0.676)
  • Q6YWQ9 (score: 0.462)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035939 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000012165 (score: 0.306)
  • ENSPTRP00000012824 (score: 0.203)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005611 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC9227c (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157742 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000181267 (score: 0.437)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013360001 (score: 1.000; bootstrap: 91%)
  • GSTENP00001095001 (score: 0.408)
  • GSTENP00012851001 (score: 0.386)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000010310 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

HPAE

From SHIGELLACYC

E. coli O157

BETB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00171 Aldehyde dehydrogenase family

Panther (EcoliWiki Page)

PTHR11699:SF47

Superfamily (EcoliWiki Page)

SUPERFAMILY:53720

EcoCyc

EcoCyc:EG10110

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10110

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000106

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0108

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001072

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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