betA:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|betA}}{{Tab|Gene|betA}}{{Tab|Gene Product(s)|betA}}{{Tab|Expression|betA}}{{Tab On|Evolution|betA}}{{Tab|On One Page|betA}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46ab9e0c01ad3"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..M46a06bb7454b0&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
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''E. coli'' O157
|
BETA
|
From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44605.X46ab9e0c01ad3&page=44605&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414845&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414845&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46ab9e2dee3c3"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF05199 PF05199  GMC oxidoreductase]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00732 PF00732  GMC oxidoreductase]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51905 SUPERFAMILY:51905]
|
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00732 PFAM:PF00732]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11552:SF26 PTHR11552:SF26]
|
|
   
   
|-class='sortbottom'
|-  
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..X46a06bc3dff29&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54373 SUPERFAMILY:54373]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG10109
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10109
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000105
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0107
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0001070
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44605.C46ab9e2dee3c3&page=44605&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
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{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44605.W46a7ed9a6014d&page=44605&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024305 (score: 1.000; bootstrap: 98%)
  • ENSANGP00000015190 (score: 0.448)
  • ENSANGP00000012795 (score: 0.221)
  • ENSANGP00000022822 (score: 0.219)
  • ENSANGP00000015865 (score: 0.206)
  • ENSANGP00000002989 (score: 0.205)
  • ENSANGP00000025265 (score: 0.204)
  • ENSANGP00000005507 (score: 0.178)
  • ENSANGP00000012169 (score: 0.150)
  • ENSANGP00000005577 (score: 0.133)
  • ENSANGP00000015052 (score: 0.132)
  • ENSANGP00000027087 (score: 0.127)
  • ENSANGP00000016488 (score: 0.101)
  • ENSANGP00000005557 (score: 0.091)
  • ENSANGP00000005452 (score: 0.086)
  • ENSANGP00000026044 (score: 0.083)
  • ENSANGP00000002145 (score: 0.083)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013035 (score: 1.000; bootstrap: 98%)
  • ENSAPMP00000002616 (score: 0.375)
  • ENSAPMP00000012876 (score: 0.121)
  • ENSAPMP00000012972 (score: 0.095)
  • ENSAPMP00000012902 (score: 0.093)
  • ENSAPMP00000029877 (score: 0.080)
  • ENSAPMP00000006409 (score: 0.078)
  • ENSAPMP00000032879 (score: 0.072)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G12570 (score: 1.000; bootstrap: 100%)
  • AT5G51950 (score: 0.480)
  • AT3G56060 (score: 0.468)
  • AT1G72970 (score: 0.417)
  • AT5G51930 (score: 0.411)
  • AT1G73050 (score: 0.343)
  • AT1G14185 (score: 0.240)
  • AT1G14190 (score: 0.237)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013227 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032297 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007917 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012205 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000007524 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187375 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030592 (score: 1.000; bootstrap: 99%)
  • FBgn0030598 (score: 0.334)
  • FBgn0030590 (score: 0.327)
  • FBgn0030591 (score: 0.278)
  • FBgn0039415 (score: 0.183)
  • FBgn0030596 (score: 0.154)
  • FBgn0001112 (score: 0.153)
  • FBgn0030588 (score: 0.149)
  • FBgn0030589 (score: 0.131)
  • FBgn0030587 (score: 0.108)
  • FBgn0030586 (score: 0.099)
  • FBgn0030594 (score: 0.061)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21838-PA (score: 1.000; bootstrap: 97%)
  • GA21849-PA (score: 0.494)
  • GA21847-PA (score: 0.396)
  • GA19386-PA (score: 0.256)
  • GA11607-PA (score: 0.208)
  • GA11047-PA (score: 0.198)
  • GA21852-PA (score: 0.174)
  • GA21850-PA (score: 0.162)
  • GA11686-PA (score: 0.160)
  • GA21853-PA (score: 0.136)
  • GA21846-PA (score: 0.079)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008595 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000319851 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000025315 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015674 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1860776 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6EPQ2 (score: 1.000; bootstrap: 79%)
  • Q6K4D7 (score: 1.000; bootstrap: 80%)
  • Q6Z290 (score: 0.731)
  • Q7XTZ0 (score: 0.636)
  • Q8H094 (score: 0.507)
  • Q8H052 (score: 0.504)
  • Q9M4V5 (score: 0.494)
  • Q67W87 (score: 0.263)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000025961 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021407 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000172206 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022584001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000001316 (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

E. coli O157

BETA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF05199 GMC oxidoreductase

Pfam (EcoliWiki Page)

PF00732 GMC oxidoreductase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51905

Panther (EcoliWiki Page)

PTHR11552:SF26

Superfamily (EcoliWiki Page)

SUPERFAMILY:54373

EcoCyc

EcoCyc:EG10109

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10109

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000105

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0107

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001070

Escherichia coli str. K-12 substr. MG1655

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