cueO:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
deleting Pfam from accessions table on evolution pages
touch
 
(4 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="I46ab99b270383"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46ab99b270383"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 161: Line 161:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="F46ab99bd21d72"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46ab99bd21d72"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00394 PF00394  Multicopper oxidase]
|
|-  
|-  
|
|
Line 185: Line 192:
|
|
   
   
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF07731 PF07731  Multicopper oxidase]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF07732 PF07732  Multicopper oxidase]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG12318
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG12318
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120002194
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB2223
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0000430
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 204: Line 260:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="O46a7e9cd6be6b"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46a7e9cd6be6b"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:29, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000035 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000008010 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000006188 (score: 0.259)
  • ENSAPMP00000021510 (score: 0.225)
  • ENSAPMP00000008011 (score: 0.179)
  • ENSAPMP00000028827 (score: 0.138)
  • ENSAPMP00000016897 (score: 0.108)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G71040 (score: 1.000; bootstrap: 70%)
  • AT1G23010 (score: 0.781)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002481 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000018618 (score: 0.249)
  • ENSCINP00000018617 (score: 0.186)
  • ENSCINP00000006845 (score: 0.169)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039387 (score: 1.000; bootstrap: 100%)
  • FBgn0052557 (score: 0.274)
  • FBgn0032116 (score: 0.175)
  • FBgn0050437 (score: 0.091)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19259-PA (score: 1.000; bootstrap: 100%)
  • GA16988-PA (score: 0.258)
  • GA17667-PA (score: 0.192)
  • GA15844-PA (score: 0.141)

From Inparanoid:20070104

Mus musculus

  • MGI:1332240 (score: 1.000; bootstrap: 100%)
  • MGI:88476 (score: 0.423)
  • MGI:2685355 (score: 0.399)
  • MGI:88383 (score: 0.267)
  • MGI:88382 (score: 0.246)

From Inparanoid:20070104

Oryza gramene

  • Q7F757 (score: 1.000; bootstrap: 64%)
  • Q5ZE01 (score: 0.972)
  • Q9AWU4 (score: 0.624)
  • Q5ZDZ9 (score: 0.575)
  • Q5ZE07 (score: 0.411)
  • Q5ZE00 (score: 0.354)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR058W (score: 1.000; bootstrap: 100%)
  • YFL041W (score: 0.406)
  • YDR506C (score: 0.095)

From Inparanoid:20070104

Shigella flexneri

YACK

From SHIGELLACYC

E. coli O157

YACK

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00394 Multicopper oxidase

Superfamily (EcoliWiki Page)

SUPERFAMILY:49503

Superfamily (EcoliWiki Page)

SUPERFAMILY:49503

Superfamily (EcoliWiki Page)

SUPERFAMILY:49503

Pfam (EcoliWiki Page)

PF07731 Multicopper oxidase

Pfam (EcoliWiki Page)

PF07732 Multicopper oxidase

EcoCyc

EcoCyc:EG12318

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12318

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002194

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2223

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000430

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=cueO:Evolution&oldid=1388911"