rapA:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF04851 PFAM:PF04851]
[http://pfam.janelia.org/family/PF00271 PF00271  Helicase conserved C-terminal domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00176 PF00176  SNF2 family N-terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF12137 PF12137  RNA polymerase recycling family C-terminal]
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[[EcoCyc]]
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EcoCyc:EG11083
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11083
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001071
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1075
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0000198
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:29, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000007696 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000026244 (score: 0.260)
  • ENSANGP00000015114 (score: 0.159)
  • ENSANGP00000003358 (score: 0.143)
  • ENSANGP00000017802 (score: 0.139)
  • ENSANGP00000008665 (score: 0.135)
  • ENSANGP00000016886 (score: 0.133)
  • ENSANGP00000008413 (score: 0.128)
  • ENSANGP00000013716 (score: 0.123)
  • ENSANGP00000006590 (score: 0.117)
  • ENSANGP00000011045 (score: 0.113)
  • ENSANGP00000016881 (score: 0.104)
  • ENSANGP00000022335 (score: 0.099)
  • ENSANGP00000010721 (score: 0.091)
  • ENSANGP00000028812 (score: 0.053)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G02090 (score: 1.000; bootstrap: 100%)
  • AT3G12810 (score: 0.208)
  • AT3G57300 (score: 0.180)
  • AT3G06400 (score: 0.168)
  • AT5G18620 (score: 0.164)
  • AT2G13370 (score: 0.157)
  • AT5G19310 (score: 0.154)
  • AT3G06010 (score: 0.152)
  • AT5G66750 (score: 0.147)
  • AT5G44800 (score: 0.143)
  • AT2G25170 (score: 0.141)
  • AT2G28290 (score: 0.140)
  • AT4G31900 (score: 0.130)
  • AT2G46020 (score: 0.124)
  • AT2G44980 (score: 0.123)
  • AT2G18760 (score: 0.110)
  • AT5G63950 (score: 0.098)
  • AT1G03750 (score: 0.095)
  • AT3G54280 (score: 0.092)
  • AT3G19210 (score: 0.091)
  • AT1G11100 (score: 0.082)
  • AT1G61140 (score: 0.074)
  • AT1G02670 (score: 0.070)
  • AT3G16600 (score: 0.064)
  • AT2G40770 (score: 0.064)
  • AT5G07810 (score: 0.062)
  • AT1G08600 (score: 0.056)
  • AT5G22750 (score: 0.054)
  • AT1G48310 (score: 0.050)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000000833 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000026513 (score: 0.279)
  • ENSBTAP00000008862 (score: 0.121)
  • ENSBTAP00000013708 (score: 0.120)
  • ENSBTAP00000004408 (score: 0.119)
  • ENSBTAP00000018494 (score: 0.119)
  • ENSBTAP00000019624 (score: 0.109)
  • ENSBTAP00000023638 (score: 0.107)
  • ENSBTAP00000021438 (score: 0.106)
  • ENSBTAP00000022692 (score: 0.106)
  • ENSBTAP00000027215 (score: 0.105)
  • ENSBTAP00000019119 (score: 0.104)
  • ENSBTAP00000027796 (score: 0.103)
  • ENSBTAP00000019612 (score: 0.103)
  • ENSBTAP00000002955 (score: 0.103)
  • ENSBTAP00000010688 (score: 0.101)
  • ENSBTAP00000027762 (score: 0.100)
  • ENSBTAP00000026607 (score: 0.090)
  • ENSBTAP00000007848 (score: 0.089)
  • ENSBTAP00000007535 (score: 0.084)
  • ENSBTAP00000020459 (score: 0.083)
  • ENSBTAP00000002973 (score: 0.082)
  • ENSBTAP00000027216 (score: 0.081)
  • ENSBTAP00000009868 (score: 0.081)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000011930 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000027555 (score: 0.301)
  • ENSCAFP00000011181 (score: 0.297)
  • ENSCAFP00000013970 (score: 0.247)
  • ENSCAFP00000016310 (score: 0.231)
  • ENSCAFP00000022078 (score: 0.224)
  • ENSCAFP00000013610 (score: 0.219)
  • ENSCAFP00000011426 (score: 0.219)
  • ENSCAFP00000008408 (score: 0.214)
  • ENSCAFP00000010654 (score: 0.200)
  • ENSCAFP00000014754 (score: 0.199)
  • ENSCAFP00000002973 (score: 0.195)
  • ENSCAFP00000025953 (score: 0.194)
  • ENSCAFP00000016192 (score: 0.193)
  • ENSCAFP00000024834 (score: 0.163)
  • ENSCAFP00000009895 (score: 0.156)
  • ENSCAFP00000028919 (score: 0.137)
  • ENSCAFP00000010955 (score: 0.132)
  • ENSCAFP00000009587 (score: 0.127)
  • ENSCAFP00000025260 (score: 0.119)
  • ENSCAFP00000001757 (score: 0.110)
  • ENSCAFP00000006360 (score: 0.098)
  • ENSCAFP00000025411 (score: 0.094)
  • ENSCAFP00000014871 (score: 0.092)
  • ENSCAFP00000013506 (score: 0.083)
  • ENSCAFP00000012193 (score: 0.059)
  • ENSCAFP00000014474 (score: 0.055)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002645 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000009708 (score: 0.214)
  • ENSCINP00000010417 (score: 0.212)
  • ENSCINP00000008494 (score: 0.196)
  • ENSCINP00000012546 (score: 0.195)
  • ENSCINP00000002650 (score: 0.176)
  • ENSCINP00000018745 (score: 0.171)
  • ENSCINP00000015797 (score: 0.169)
  • ENSCINP00000015079 (score: 0.165)
  • ENSCINP00000019402 (score: 0.162)
  • ENSCINP00000006250 (score: 0.156)
  • ENSCINP00000012187 (score: 0.154)
  • ENSCINP00000008024 (score: 0.153)
  • ENSCINP00000018719 (score: 0.148)
  • ENSCINP00000003425 (score: 0.140)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000239027 (score: 1.000; bootstrap: 100%)
  • ENSP00000283131 (score: 0.265)
  • ENSP00000218157 (score: 0.261)
  • ENSP00000355356 (score: 0.221)
  • ENSP00000343042 (score: 0.212)
  • ENSP00000350720 (score: 0.201)
  • ENSP00000265773 (score: 0.200)
  • ENSP00000307304 (score: 0.194)
  • ENSP00000284049 (score: 0.192)
  • ENSP00000244003 (score: 0.191)
  • ENSP00000219084 (score: 0.186)
  • ENSP00000254086 (score: 0.181)
  • ENSP00000262707 (score: 0.180)
  • ENSP00000351947 (score: 0.173)
  • ENSP00000311700 (score: 0.155)
  • ENSP00000332628 (score: 0.144)
  • ENSP00000262450 (score: 0.144)
  • ENSP00000265899 (score: 0.142)
  • ENSP00000312419 (score: 0.131)
  • ENSP00000265990 (score: 0.117)
  • ENSP00000342402 (score: 0.094)
  • ENSP00000308619 (score: 0.094)
  • ENSP00000296477 (score: 0.087)
  • ENSP00000334675 (score: 0.086)
  • ENSP00000336606 (score: 0.082)
  • ENSP00000262745 (score: 0.080)
  • ENSP00000308944 (score: 0.057)
  • ENSP00000251165 (score: 0.056)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009106 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000002477 (score: 0.198)
  • ENSMODP00000013666 (score: 0.128)
  • ENSMODP00000003332 (score: 0.126)
  • ENSMODP00000003825 (score: 0.125)
  • ENSMODP00000003046 (score: 0.125)
  • ENSMODP00000000470 (score: 0.117)
  • ENSMODP00000020205 (score: 0.115)
  • ENSMODP00000000217 (score: 0.110)
  • ENSMODP00000014850 (score: 0.108)
  • ENSMODP00000007805 (score: 0.107)
  • ENSMODP00000008303 (score: 0.107)
  • ENSMODP00000010556 (score: 0.106)
  • ENSMODP00000023332 (score: 0.105)
  • ENSMODP00000004375 (score: 0.104)
  • ENSMODP00000016479 (score: 0.103)
  • ENSMODP00000016448 (score: 0.103)
  • ENSMODP00000000865 (score: 0.102)
  • ENSMODP00000007713 (score: 0.102)
  • ENSMODP00000024050 (score: 0.098)
  • ENSMODP00000022561 (score: 0.096)
  • ENSMODP00000009322 (score: 0.095)
  • ENSMODP00000007809 (score: 0.095)
  • ENSMODP00000016503 (score: 0.091)
  • ENSMODP00000006928 (score: 0.084)
  • ENSMODP00000024049 (score: 0.084)
  • ENSMODP00000019341 (score: 0.083)
  • ENSMODP00000026570 (score: 0.067)
  • ENSMODP00000006332 (score: 0.065)

From Inparanoid:20070104

Oryza gramene

  • Q5SML0 (score: 1.000; bootstrap: 100%)
  • Q6YNJ5 (score: 1.000; bootstrap: 100%)
  • Q6YNJ6 (score: 1.000; bootstrap: 100%)
  • Q5NA48 (score: 0.179)
  • Q5JJL5 (score: 0.162)
  • Q7G8Y3 (score: 0.162)
  • Q5WN07 (score: 0.161)
  • Q60EX7 (score: 0.142)
  • Q8W121 (score: 0.138)
  • Q67UT8 (score: 0.133)
  • Q6ZGY4 (score: 0.133)
  • Q53K28 (score: 0.125)
  • Q6RYF0 (score: 0.122)
  • Q8GZN6 (score: 0.121)
  • Q8GSF4 (score: 0.121)
  • Q6RYE3 (score: 0.120)
  • Q655K6 (score: 0.094)
  • Q7XQJ0 (score: 0.093)
  • Q8GSA1 (score: 0.053)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000038318 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000028278 (score: 0.897)
  • ENSPTRP00000017881 (score: 0.365)
  • ENSPTRP00000046804 (score: 0.348)
  • ENSPTRP00000004851 (score: 0.333)
  • ENSPTRP00000013691 (score: 0.326)
  • ENSPTRP00000046873 (score: 0.309)
  • ENSPTRP00000012779 (score: 0.289)
  • ENSPTRP00000029279 (score: 0.278)
  • ENSPTRP00000014854 (score: 0.258)
  • ENSPTRP00000000143 (score: 0.258)
  • ENSPTRP00000046785 (score: 0.252)
  • ENSPTRP00000007828 (score: 0.249)
  • ENSPTRP00000046277 (score: 0.239)
  • ENSPTRP00000023188 (score: 0.219)
  • ENSPTRP00000010392 (score: 0.219)
  • ENSPTRP00000034725 (score: 0.206)
  • ENSPTRP00000009601 (score: 0.204)
  • ENSPTRP00000013848 (score: 0.199)
  • ENSPTRP00000004282 (score: 0.144)
  • ENSPTRP00000004803 (score: 0.138)
  • ENSPTRP00000046096 (score: 0.125)
  • ENSPTRP00000001196 (score: 0.063)
  • ENSPTRP00000025849 (score: 0.061)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC20G88c (score: 1.000; bootstrap: 100%)
  • SPCC12355c (score: 0.353)
  • SPAC25A81c (score: 0.312)
  • SPAC29B121 (score: 0.137)
  • SPAC12501 (score: 0.126)
  • SPCC16204c (score: 0.123)
  • SPAC3G61 (score: 0.103)
  • SPBC18261c (score: 0.095)
  • SPAC22F33c (score: 0.068)
  • SPBC5820c (score: 0.064)
  • SPAC15A103c (score: 0.063)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000167031 (score: 1.000; bootstrap: 61%)
  • NEWSINFRUP00000158240 (score: 0.291)
  • NEWSINFRUP00000140570 (score: 0.102)
  • NEWSINFRUP00000139955 (score: 0.094)
  • NEWSINFRUP00000143763 (score: 0.075)
  • NEWSINFRUP00000157064 (score: 0.074)
  • NEWSINFRUP00000172611 (score: 0.065)
  • NEWSINFRUP00000151709 (score: 0.062)
  • NEWSINFRUP00000128848 (score: 0.061)
  • NEWSINFRUP00000160883 (score: 0.060)
  • NEWSINFRUP00000139269 (score: 0.058)
  • NEWSINFRUP00000141439 (score: 0.057)
  • NEWSINFRUP00000136933 (score: 0.056)
  • NEWSINFRUP00000171561 (score: 0.052)
  • NEWSINFRUP00000180874 (score: 0.052)
  • NEWSINFRUP00000137957 (score: 0.051)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00032631001 (score: 1.000; bootstrap: 100%)
  • GSTENP00020705001 (score: 0.182)
  • GSTENP00007885001 (score: 0.170)
  • GSTENP00032856001 (score: 0.165)
  • GSTENP00020327001 (score: 0.157)
  • GSTENP00028558001 (score: 0.151)
  • GSTENP00032466001 (score: 0.150)
  • GSTENP00007355001 (score: 0.149)
  • GSTENP00015134001 (score: 0.147)
  • GSTENP00006740001 (score: 0.145)
  • GSTENP00013647001 (score: 0.135)
  • GSTENP00024354001 (score: 0.134)
  • GSTENP00008602001 (score: 0.132)
  • GSTENP00015321001 (score: 0.121)
  • GSTENP00030634001 (score: 0.117)
  • GSTENP00019136001 (score: 0.113)
  • GSTENP00006554001 (score: 0.107)
  • GSTENP00027402001 (score: 0.084)
  • GSTENP00017033001 (score: 0.074)
  • GSTENP00011456001 (score: 0.061)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000041632 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000046712 (score: 0.186)
  • ENSXETP00000019409 (score: 0.155)
  • ENSXETP00000033470 (score: 0.148)
  • ENSXETP00000003188 (score: 0.147)
  • ENSXETP00000006372 (score: 0.146)
  • ENSXETP00000038157 (score: 0.145)
  • ENSXETP00000020619 (score: 0.145)
  • ENSXETP00000052081 (score: 0.141)
  • ENSXETP00000043540 (score: 0.139)
  • ENSXETP00000037477 (score: 0.137)
  • ENSXETP00000000736 (score: 0.136)
  • ENSXETP00000004361 (score: 0.134)
  • ENSXETP00000051466 (score: 0.129)
  • ENSXETP00000025170 (score: 0.120)
  • ENSXETP00000009818 (score: 0.119)
  • ENSXETP00000032473 (score: 0.094)
  • ENSXETP00000048867 (score: 0.087)
  • ENSXETP00000000131 (score: 0.083)
  • ENSXETP00000009776 (score: 0.079)
  • ENSXETP00000015533 (score: 0.077)
  • ENSXETP00000026599 (score: 0.077)
  • ENSXETP00000004350 (score: 0.075)
  • ENSXETP00000009513 (score: 0.063)

From Inparanoid:20070104

Shigella flexneri

HEPA

From SHIGELLACYC

E. coli O157

Z0067

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00271 Helicase conserved C-terminal domain

Panther (EcoliWiki Page)

PTHR10799:SF40

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Pfam (EcoliWiki Page)

PF00176 SNF2 family N-terminal domain

Pfam (EcoliWiki Page)

PF12137 RNA polymerase recycling family C-terminal

EcoCyc

EcoCyc:EG11083

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11083

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001071

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1075

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000198

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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