prpR:Evolution: Difference between revisions

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{|  id="V46ab9e9880bdc"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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|-  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''E. coli'' O157
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PRPR
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From ECOO157CYC
 
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===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414864&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
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{|  id="F4c604e91c1c04"  class=" tableEdit Evolution_families_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
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''Arabidopsis thaliana'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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* AT1G19050 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF02954 PF02954 Bacterial regulatory protein, Fis family]
* AT1G74890 (score: 0.581)
* AT5G24470 (score: 0.061)
* AT5G02810 (score: 0.052)
|
From Inparanoid:20070104
|-
|
''Oryza gramene''  
|
* Q4GZL0 (score: 1.000; bootstrap: 100%)
* Q9FRY8 (score: 0.455)
* Q6YVX7 (score: 0.448)
* Q4GZK9 (score: 0.448)
* Q7XRI1 (score: 0.361)
* Q6H468 (score: 0.164)
* Q9FRZ0 (score: 0.159)
* Q9FXQ7 (score: 0.157)
* Q7XKF6 (score: 0.157)
* Q4GZK6 (score: 0.152)
* Q942A1 (score: 0.152)
* Q4GZK7 (score: 0.152)
* Q9FRZ1 (score: 0.147)
* Q6K9T0 (score: 0.144)
* Q4GZK8 (score: 0.144)
* Q4GZK2 (score: 0.137)
* Q9FRY9 (score: 0.134)
* Q9S7U8 (score: 0.134)
* Q7XQA6 (score: 0.134)
* Q4JF20 (score: 0.134)
* Q4GZK5 (score: 0.134)
* Q8H5N4 (score: 0.122)
* Q4GZK4 (score: 0.122)
* Q9ZQW0 (score: 0.117)
* Q8GVV6 (score: 0.092)
* Q4GZK3 (score: 0.092)
* Q8GVV1 (score: 0.055)
* Q6YZK8 (score: 0.055)
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From Inparanoid:20070104
|-
|-  
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''Xenopus tropicalis'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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* ENSXETP00000037054 (score: 1.000; bootstrap: 99%)
[http://pfam.janelia.org/family/PF00158 PF00158  Sigma-54 interaction domain]
|
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From Inparanoid:20070104
|-
|-  
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''E. coli'' O157
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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PRPR
[http://pfam.janelia.org/family/PF06506 PF06506  Propionate catabolism activator]
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|
From ECOO157CYC
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<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
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[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 00:39, 16 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G19050 (score: 1.000; bootstrap: 100%)
  • AT1G74890 (score: 0.581)
  • AT5G24470 (score: 0.061)
  • AT5G02810 (score: 0.052)

From Inparanoid:20070104

Oryza gramene

  • Q4GZL0 (score: 1.000; bootstrap: 100%)
  • Q9FRY8 (score: 0.455)
  • Q6YVX7 (score: 0.448)
  • Q4GZK9 (score: 0.448)
  • Q7XRI1 (score: 0.361)
  • Q6H468 (score: 0.164)
  • Q9FRZ0 (score: 0.159)
  • Q9FXQ7 (score: 0.157)
  • Q7XKF6 (score: 0.157)
  • Q4GZK6 (score: 0.152)
  • Q942A1 (score: 0.152)
  • Q4GZK7 (score: 0.152)
  • Q9FRZ1 (score: 0.147)
  • Q6K9T0 (score: 0.144)
  • Q4GZK8 (score: 0.144)
  • Q4GZK2 (score: 0.137)
  • Q9FRY9 (score: 0.134)
  • Q9S7U8 (score: 0.134)
  • Q7XQA6 (score: 0.134)
  • Q4JF20 (score: 0.134)
  • Q4GZK5 (score: 0.134)
  • Q8H5N4 (score: 0.122)
  • Q4GZK4 (score: 0.122)
  • Q9ZQW0 (score: 0.117)
  • Q8GVV6 (score: 0.092)
  • Q4GZK3 (score: 0.092)
  • Q8GVV1 (score: 0.055)
  • Q6YZK8 (score: 0.055)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000037054 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

E. coli O157

PRPR

From ECOO157CYC

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Notes

Families

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02954 Bacterial regulatory protein, Fis family

Pfam (EcoliWiki Page)

PF00158 Sigma-54 interaction domain

Pfam (EcoliWiki Page)

PF06506 Propionate catabolism activator


edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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