nagC:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php
 
(13 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|nagC}}{{Tab|Gene|nagC}}{{Tab|Gene Product(s)|nagC}}{{Tab|Expression|nagC}}{{Tab On|Evolution|nagC}}{{Tab|On One Page|nagC}}{{TabsBottom}}
{{Tab|Quickview|nagC}}{{Tab|Gene|nagC}}{{Tab|Gene Product(s)|nagC}}{{Tab|Expression|nagC}}{{Tab On|Evolution|nagC}}{{Tab|On One Page|nagC}}{{TabsBottom}}
Line 12: Line 21:
</noinclude>
</noinclude>
==Homologs in Other Organisms==
==Homologs in Other Organisms==
<!--box uid=421aa90e079fa326b6494f812ad13e79..Z46a06fb673978-->
{{BacktoTop}}
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45315.B46aba9617ac4d-->
{|class = 'sortable' {{Prettytable}} id='87399'
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|  id="B46aba9617ac4d"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 24: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 31: Line 46:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 38: Line 53:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 46: Line 61:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 53: Line 68:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 60: Line 75:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Macaca mulatta''   
''Macaca mulatta''   
Line 67: Line 82:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 74: Line 89:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 81: Line 96:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 88: Line 103:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 95: Line 110:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 102: Line 117:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 109: Line 124:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Xenopus tropicalis''   
''Xenopus tropicalis''   
Line 116: Line 131:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 123: Line 138:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Z46a06fb673978&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
''E. coli'' O157
|
NAGC
|
From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45315.B46aba9617ac4d&page=45315&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..Z46a06fb673978-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45315.B46aba9617ac4d-->
{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415202&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
<!--box uid=421aa90e079fa326b6494f812ad13e79..Z46a06fb673978-->
{{BacktoTop}}
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.45315.R4c604e6dcd552-->
{|class = 'sortable' {{Prettytable}} id='87399'
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Evolution_families_table_help}}
{|  id="R4c604e6dcd552"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
|
''Anopheles gambiae'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSANGP00000028845 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF01047 PF01047  MarR family]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Bos taurus'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSBTAP00000001520 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF00480 PF00480  ROK family]
|
|
From Inparanoid:20070104
   
|-
 
|
|- class="tableEdit_footer"
''Canis familiaris''  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.45315.R4c604e6dcd552&page=45315&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|
* ENSCAFP00000003351 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Danio rerio'' 
|
* ZDB-GENE-040426-1848 (score: 1.000; bootstrap: 100%)
* ZDB-CDNA-040425-2788 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000024699 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000340770 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000008062 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000003196 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:1354951 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000035798 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000019532 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000157294 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00033530001 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000015559 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
NAGC
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
NAGC
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Z46a06fb673978&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..Z46a06fb673978-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.45315.R4c604e6dcd552--></protect>
{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===




==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45315.B46a7f76cd1e14-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|  id="B46a7f76cd1e14"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45315.B46a7f76cd1e14&page=45315&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45315.B46a7f76cd1e14-->
 
 
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 23:25, 15 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000028845 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001520 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003351 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1848 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2788 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000024699 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000340770 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008062 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003196 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1354951 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035798 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019532 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157294 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00033530001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015559 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NAGC

From SHIGELLACYC

E. coli O157

NAGC

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01047 MarR family

Pfam (EcoliWiki Page)

PF00480 ROK family


edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=nagC:Evolution&oldid=1290558"