dinG:Evolution: Difference between revisions

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{|class = 'sortable' {{Prettytable}} id='208275'
{|  id="K46abae813774f"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
''Bos taurus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415320&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
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{|class = 'sortable' {{Prettytable}} id='208275'
{|  id="Q4c604df479127"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
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''Bos taurus'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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* ENSBTAP00000002680 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF00270 PF00270  DEAD/DEAH box helicase]
* ENSBTAP00000028108 (score: 0.092)
* ENSBTAP00000016008 (score: 0.082)
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From Inparanoid:20070104
|-
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''Homo sapiens'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
* ENSP00000221481 (score: 1.000; bootstrap: 100%)
* ENSP00000259008 (score: 0.107)
* ENSP00000347362 (score: 0.085)
* ENSP00000228264 (score: 0.079)
* ENSP00000339557 (score: 0.070)  
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From Inparanoid:20070104
[http://pfam.janelia.org/family/PF06733 PF06733  DEAD_2]
|-
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''Monodelphis domestica''  
   
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* ENSMODP00000021212 (score: 1.000; bootstrap: 100%)
|- class="tableEdit_footer"
* ENSMODP00000022909 (score: 0.082)
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.45563.Q4c604df479127&page=45563&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
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From Inparanoid:20070104
|-
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''Mus musculus'' 
|
* MGI:95413 (score: 1.000; bootstrap: 100%)
* MGI:2139369 (score: 0.109)
* MGI:2442836 (score: 0.107)
* MGI:2443590 (score: 0.088)
|
From Inparanoid:20070104
|-
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''Pan troglodytes'' 
|
* ENSPTRP00000019135 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
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''Rattus norvegicus'' 
|
* ENSRNOP00000024247 (score: 1.000; bootstrap: 100%)
* ENSRNOP00000036908 (score: 0.105)
* ENSRNOP00000036941 (score: 0.094)
* ENSRNOP00000016588 (score: 0.061)
|
From Inparanoid:20070104
|-
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''Saccharomyces cerevisiae'' 
|
* YER171W (score: 1.000; bootstrap: 100%)
* YPL008W (score: 0.069)
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From Inparanoid:20070104
|-
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''Takifugu rubripes'' 
|
* NEWSINFRUP00000180374 (score: 1.000; bootstrap: 100%)
* NEWSINFRUP00000139789 (score: 0.235)
* NEWSINFRUP00000129998 (score: 0.167)
* NEWSINFRUP00000150294 (score: 0.086)
|
From Inparanoid:20070104
|-
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''Shigella flexneri'' 
|
DING
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From SHIGELLACYC
|-
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''E. coli'' O157
|
Z1020
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45563.K46abae813774f&page=45563&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 21:55, 15 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000002680 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000028108 (score: 0.092)
  • ENSBTAP00000016008 (score: 0.082)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000221481 (score: 1.000; bootstrap: 100%)
  • ENSP00000259008 (score: 0.107)
  • ENSP00000347362 (score: 0.085)
  • ENSP00000228264 (score: 0.079)
  • ENSP00000339557 (score: 0.070)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021212 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000022909 (score: 0.082)

From Inparanoid:20070104

Mus musculus

  • MGI:95413 (score: 1.000; bootstrap: 100%)
  • MGI:2139369 (score: 0.109)
  • MGI:2442836 (score: 0.107)
  • MGI:2443590 (score: 0.088)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000019135 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000024247 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000036908 (score: 0.105)
  • ENSRNOP00000036941 (score: 0.094)
  • ENSRNOP00000016588 (score: 0.061)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER171W (score: 1.000; bootstrap: 100%)
  • YPL008W (score: 0.069)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000180374 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000139789 (score: 0.235)
  • NEWSINFRUP00000129998 (score: 0.167)
  • NEWSINFRUP00000150294 (score: 0.086)

From Inparanoid:20070104

Shigella flexneri

DING

From SHIGELLACYC

E. coli O157

Z1020

From ECOO157CYC

edit table


Notes

Families

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00270 DEAD/DEAH box helicase

Pfam (EcoliWiki Page)

PF06733 DEAD_2


edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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