melB:Evolution: Difference between revisions

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{|class = 'sortable' {{Prettytable}} id='213978'
{|  id="S46ac167ecb49e"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Danio rerio''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52209.S46ac167ecb49e&page=52209&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418544&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
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<!--
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****************************************************************************************** -->{{Evolution_families_table_help}}
{|class = 'sortable' {{Prettytable}} id='213978'
{|  id="H4c604e61c3ae6"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
 
|
|- class="tableEdit_footer"
''Apis mellifera'' 
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.52209.H4c604e61c3ae6&page=52209&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|
* ENSAPMP00000016114 (score: 1.000; bootstrap: 100%)
* ENSAPMP00000023694 (score: 0.211)
* YP_026275 (score: 0.201)
|
From Inparanoid:20070104
|-
|
''Bos taurus'' 
|
* ENSBTAP00000017353 (score: 1.000; bootstrap: 100%)
* ENSBTAP00000002635 (score: 0.297)
* YP_026275 (score: 0.085)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis briggsae'' 
|
* YP_026275 (score: 0.120)
* WBGene00034984 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis elegans'' 
|
* YP_026275 (score: 0.120)
* WBGene00017530 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Canis familiaris'' 
|
* ENSCAFP00000005874 (score: 1.000; bootstrap: 100%)
* ENSCAFP00000004495 (score: 0.332)
* YP_026275 (score: 0.059)
|
From Inparanoid:20070104
|-
|
''Danio rerio'' 
|
* ZDB-GENE-041114-166 (score: 1.000; bootstrap: 100%)
* ZDB-CDNA-041114-166 (score: 1.000; bootstrap: 100%)
* ZDB-CDNA-040801-97 (score: 0.609)
* ZDB-GENE-040801-89 (score: 0.609)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000030944 (score: 1.000; bootstrap: 100%)
* ENSGALP00000006158 (score: 0.441)
* YP_026275 (score: 0.097)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000348883 (score: 1.000; bootstrap: 100%)
* ENSP00000317072 (score: 0.344)
* YP_026275 (score: 0.084)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000013959 (score: 1.000; bootstrap: 100%)
* YP_026275 (score: 0.115)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000008544 (score: 1.000; bootstrap: 100%)
* YP_026275 (score: 0.111)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:1923824 (score: 1.000; bootstrap: 100%)
* MGI:3583946 (score: 1.000; bootstrap: 100%)
* YP_026275 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Oryza gramene'' 
|
* YP_026275 (score: 0.195)
* Q6ZL90 (score: 1.000; bootstrap: 100%)
* Q8S7U2 (score: 0.603)
* Q67VV0 (score: 0.073)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000043351 (score: 1.000; bootstrap: 100%)
* ENSPTRP00000020107 (score: 0.127)
* YP_026275 (score: 0.088)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000019080 (score: 1.000; bootstrap: 100%)
* ENSRNOP00000042476 (score: 0.318)
* YP_026275 (score: 0.081)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000145032 (score: 1.000; bootstrap: 100%)
* NEWSINFRUP00000149739 (score: 0.479)
* NEWSINFRUP00000161355 (score: 0.397)
* YP_026275 (score: 0.057)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00017558001 (score: 1.000; bootstrap: 100%)
* GSTENP00005513001 (score: 1.000; bootstrap: 100%)
* GSTENP00023508001 (score: 0.178)
* GSTENP00018375001 (score: 0.064)
* YP_026275 (score: 0.114)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000002564 (score: 1.000; bootstrap: 100%)
* ENSXETP00000039480 (score: 0.457)
* YP_026275 (score: 0.070)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
MELB
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
MELB
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52209.S46ac167ecb49e&page=52209&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 18:52, 9 August 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000016114 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000023694 (score: 0.211)
  • YP_026275 (score: 0.201)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017353 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000002635 (score: 0.297)
  • YP_026275 (score: 0.085)

From Inparanoid:20070104

Caenorhabditis briggsae

  • YP_026275 (score: 0.120)
  • WBGene00034984 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • YP_026275 (score: 0.120)
  • WBGene00017530 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005874 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000004495 (score: 0.332)
  • YP_026275 (score: 0.059)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041114-166 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041114-166 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040801-97 (score: 0.609)
  • ZDB-GENE-040801-89 (score: 0.609)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000030944 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000006158 (score: 0.441)
  • YP_026275 (score: 0.097)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000348883 (score: 1.000; bootstrap: 100%)
  • ENSP00000317072 (score: 0.344)
  • YP_026275 (score: 0.084)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013959 (score: 1.000; bootstrap: 100%)
  • YP_026275 (score: 0.115)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008544 (score: 1.000; bootstrap: 100%)
  • YP_026275 (score: 0.111)

From Inparanoid:20070104

Mus musculus

  • MGI:1923824 (score: 1.000; bootstrap: 100%)
  • MGI:3583946 (score: 1.000; bootstrap: 100%)
  • YP_026275 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • YP_026275 (score: 0.195)
  • Q6ZL90 (score: 1.000; bootstrap: 100%)
  • Q8S7U2 (score: 0.603)
  • Q67VV0 (score: 0.073)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000043351 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000020107 (score: 0.127)
  • YP_026275 (score: 0.088)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019080 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000042476 (score: 0.318)
  • YP_026275 (score: 0.081)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145032 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000149739 (score: 0.479)
  • NEWSINFRUP00000161355 (score: 0.397)
  • YP_026275 (score: 0.057)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00017558001 (score: 1.000; bootstrap: 100%)
  • GSTENP00005513001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023508001 (score: 0.178)
  • GSTENP00018375001 (score: 0.064)
  • YP_026275 (score: 0.114)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002564 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000039480 (score: 0.457)
  • YP_026275 (score: 0.070)

From Inparanoid:20070104

Shigella flexneri

MELB

From SHIGELLACYC

E. coli O157

MELB

From ECOO157CYC

edit table


Notes

Families

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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