View source for yhaJ:Gene

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<noinclude>{{TabsTop}} 
{{Tab|Quickview|yhaJ}}{{Tab On|Gene|yhaJ}}{{Tab|Gene Product(s)|yhaJ}}{{Tab|Expression|yhaJ}}{{Tab|Evolution|yhaJ}}{{Tab|On One Page|yhaJ}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;" 
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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==Nomenclature==
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{|   id="Y46a9edc11a6d8"  class=" tableEdit Gene_nomenclature_table"  

|-
!align=left {{table_heading_style}} |Standard name
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''yhaJ''
|-
!align=left {{table_heading_style}} |Mnemonic
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Systematic nomenclature
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!align=left {{table_heading_style}} |Synonyms
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''ECK3096, b3105, JW3076''<ref name='LIB:Riley_2006'/>, JW3076''

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===Notes===


==Location(s) and DNA Sequence==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46a9edc19a8f4"  class=" tableEdit Gene_location_table"  
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
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70.08 minutes&nbsp;
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MG1655: 3252236..3251340<br /><gbrowseImage>
name=NC_000913:3251340..3252236
source=MG1655
preset=GeneLocation
</gbrowseImage>

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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7619 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3250340|3253236|GBrowse(MG1655)}}
 
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{{GBrowseFastaLink|MG1655|NC_000913|3251340|3252236|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7619 EcoCyc Sequence Dump] 
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[[REL606]]
|

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NC_012967: 3187247..3186351<br /><gbrowseImage>
name=NC_012967:3186351..3187247
source=REL606
preset=GeneLocation
</gbrowseImage>

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{{GBrowseLink|REL606|NC_012967|3186351|3187247|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|3186351|3187247|FASTA Dump}} 
|- 
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[[BW2952]]
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NC_012759: 3138488..3139384<br /><gbrowseImage>
name=NC_012759:3138488..3139384
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3138488|3139384|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|NC_012759|3138488|3139384|FASTA Dump}} 
|- 
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W3110
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&nbsp;
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W3110: 3252870..3251974<br /><gbrowseImage>
name=NC_007779:3251974..3252870
source=W3110
preset=GeneLocation
</gbrowseImage>

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{{GBrowseLink|W3110|NC_007779|3250974|3253870|GBrowse(W3110)}} 
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{{GBrowseFastaLink|W3110|NC_007779|3251974|3252870|FASTA Dump}} 
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[[DH10B]]
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DH10B: 3349981..3349085<br /><gbrowseImage>
name=NC_010473:3349085..3349981
source=DH10B
preset=GeneLocation
</gbrowseImage>

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{{GBrowseLink|DH10B|NC_010473|3347293|3351773|GBrowse(DH10B)}}
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{{GBrowseFastaLink|DH10B|NC_010473|3347293|3351773|FASTA Dump}} 

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===Notes===


==Sequence Features==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a9edc2593e4"  class=" tableEdit Gene_sequence_features_table"  
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!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

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<protect><!--Sequence_notes--></protect>
====Notes====


==Alleles and Phenotypes==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46a9edc2a13a3"  class=" tableEdit Gene_allele_table dataTable"  
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|- 
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&Delta;yhaJ (Keio:JW3076)
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deletion
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deletion
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PMID:16738554
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=108630 CGSC10349]<ref name='LIB:cgsc'/> 
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''&#916;yhaJ724::kan''
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PMID:16738554
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[[cgscmutation:105086|CGSC:105086]]
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<protect><!--Alleles_notes--></protect>
===Notes===



==Genetic Interactions==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D4e04ca0aa988e"  class=" tableEdit Genetic_interaction_table dataTable"  
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!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

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===Notes===

==Genetic Resources==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46a9edc35f18a"  class=" tableEdit Gene_resource_table"  
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!|Resource!!Resource Type!!Source!!Notes/Reference
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JW3076
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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PMID:16769691

Status:Clone OK

Primer 1:GCCGCCAAAGAAAGGGCATTAAC

Primer 2:CCTTTTCCGTTAAAAAGTTTGGG 
|- 
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[[:Category:Kohara_Phage:21D1|21D1]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=513 Genobase]
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PMID:3038334 
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[[aer:Gene|aer-3075::Tn10]]
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Linked marker
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CAG12152 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38761 CGSC7438]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 23% <ref name='LIB:Nichols_linked_Tn'/> <br /> 
Synonyms:zgh-3075::Tn10, zgj-3075::Tn10 
|- 
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[[sfsB:Gene|sfsB203::Tn10]]
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Linked marker
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CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> <br /> 
Synonyms:zgj-203::Tn10, zha-203::Tn10 

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===Notes===


==Accessions in Other Databases==
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!|Database!!Accession!!Notes
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[[EcoCyc]]
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EcoCyc:G7619
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
|- 
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[[EcoGene]]
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EcoGene:EG12749
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[RegulonDB]]
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RegulonDB:ECK120004172
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=947621 GeneID:947621]
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Escherichia coli str. K-12 substr. MG1655 
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[[EchoBASE]]
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EchoBASE:EB2605
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[ASAP]]
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ASAP:ABE-0010213
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 

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<protect><!--Gene_accessions_notes--></protect>
===Notes===


==Links==
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==References==
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{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yha genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]