View source for cof:Gene

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<noinclude>{{TabsTop}} 
{{Tab|Quickview|cof}}{{Tab On|Gene|cof}}{{Tab|Gene Product(s)|cof}}{{Tab|Expression|cof}}{{Tab|Evolution|cof}}{{Tab|On One Page|cof}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;" 
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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==Nomenclature==
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{|   id="O46a9b0b7f02dd"  class=" tableEdit Gene_nomenclature_table"  

|-
!align=left {{table_heading_style}} |Standard name
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''cof''
|-
!align=left {{table_heading_style}} |Mnemonic
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Complementation of fur
|-
!align=left {{table_heading_style}} |Synonyms
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''ECK0440, b0446, JW0436''<ref name='LIB:Riley_2006'/>, JW0436''

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===Notes===


==Location(s) and DNA Sequence==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a9b0b8a320e"  class=" tableEdit Gene_location_table"  
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|- 
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MG1655
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10.06 minutes&nbsp;
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MG1655: 466636..467454<br /><gbrowseImage>
name=NC_000913:466636..467454
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6246 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|465636|468454|GBrowse(MG1655)}}
 
|
{{GBrowseFastaLink|MG1655|NC_000913|466636|467454|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6246 EcoCyc Sequence Dump] 
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[[REL606]]
|

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NC_012967: 439479..440297<br /><gbrowseImage>
name=NC_012967:439479..440297
source=REL606
preset=GeneLocation
</gbrowseImage>

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{{GBrowseLink|REL606|NC_012967|439479|440297|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|439479|440297|FASTA Dump}} 
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[[BW2952]]
|

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NC_012759: 369395..370213<br /><gbrowseImage>
name=NC_012759:369395..370213
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|369395|370213|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|NC_012759|369395|370213|FASTA Dump}} 
|- 
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W3110
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&nbsp;
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W3110: 466636..467454<br /><gbrowseImage>
name=NC_007779:466636..467454
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|465636|468454|GBrowse(W3110)}} 
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{{GBrowseFastaLink|W3110|NC_007779|466636|467454|FASTA Dump}} 
|- 
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[[DH10B]]
|

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DH10B: 405967..406785<br /><gbrowseImage>
name=NC_010473:405967..406785
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|404331|408421|GBrowse(DH10B)}}
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{{GBrowseFastaLink|DH10B|NC_010473|404331|408421|FASTA Dump}} 

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===Notes===


==Sequence Features==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46a9b0b99f3be"  class=" tableEdit Gene_sequence_features_table"  
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!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

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<protect><!--Sequence_notes--></protect>
====Notes====


==Alleles and Phenotypes==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46a9b0ba19916"  class=" tableEdit Gene_allele_table dataTable"  
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|- 
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&Delta;cof (Keio:JW0436)
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deletion
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deletion
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|

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PMID:16738554
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=106880 CGSC8599]<ref name='LIB:cgsc'/> 
|
 
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001548 cof::Tn5KAN-2] (FB20179)
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Insertion at nt 603 in Minus orientation
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|

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PMID:15262929
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[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20179]
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does not contain [[pKD46]] 
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&Delta;cof::kan
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deletion
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[[Biolog]]:respiration
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unable to respire [[Carbon sources|Acetate]]
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PMID:16095938
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|
 
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''&#916;cof-732::kan''
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|

|

|

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PMID:16738554
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[[cgscmutation:100372|CGSC:100372]]
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<protect><!--Alleles_notes--></protect>
===Notes===



==Genetic Interactions==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M4e04b8ee3c800"  class=" tableEdit Genetic_interaction_table dataTable"  
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!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

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===Notes===

==Genetic Resources==
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!|Resource!!Resource Type!!Source!!Notes/Reference
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JW0436
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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PMID:16769691

Status:Clone OK

Primer 1:GCCGCTCGTCTGGCAGCATTTGA

Primer 2:CCTTCGGGGGAATAAGGTAGATG 
|- 
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[[:Category:Kohara_Phage:3B6|3B6]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=148 Genobase]
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PMID:3038334 
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[[:Category:Kohara_Phage:7E2|7E2]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=149 Genobase]
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PMID:3038334 
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[[:Category:Kohara_Phage:19B7|19B7]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=150 Genobase]
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PMID:3038334 
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[[ppiD:Gene|zaj-3054::Tn10]]
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Linked marker
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CAG12017 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39373 CGSC7339]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 78% <ref name='LIB:Nichols_linked_Tn'/> <br /> 
Synonyms:zba-3054::Tn10 
|- 
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[[gsk:Gene|gsk-3055::Tn10]]
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Linked marker
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CAG12154 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39379 CGSC7341]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 25% <ref name='LIB:Nichols_linked_Tn'/> <br /> 
Synonyms:zbb-30-55::TnlO, zba-3055::Tn10 

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===Notes===


==Accessions in Other Databases==
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!|Database!!Accession!!Notes
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[[EcoCyc]]
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EcoCyc:G6246
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
|- 
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[[EcoGene]]
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EcoGene:EG13216
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[RegulonDB]]
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RegulonDB:ECK120002857
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=945089 GeneID:945089]
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Escherichia coli str. K-12 substr. MG1655 
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[[EchoBASE]]
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EchoBASE:EB3007
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[ASAP]]
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ASAP:ABE-0001548
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 

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===Notes===


==Links==
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==References==
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<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:cof genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]