View source for alsC:Gene Product(s)

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<noinclude>{{TabsTop}}
{{Tab|Quickview|alsC}}{{Tab|Gene|alsC}}{{Tab On|Gene Product(s)|alsC}}{{Tab|Expression|alsC}}{{Tab|Evolution|alsC}}{{Tab|On One Page|alsC}}{{TabsBottom}}
{|
|- 
|{{Sub}}[[#Nomenclature |Nomenclature]] 
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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</noinclude>
==Nomenclature==
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|-
!align=left {{table heading style}} |Standard name
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AlsC 
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!align=left {{table heading style}} |Synonyms
||
''D-allose transporter subunit<ref name='LIB:Riley_2006'/>, membrane component of ABC superfamily<ref name='LIB:Riley_2006'/>, B4086<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjcV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AlsC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4079, JW4047, yjcV, b4086''
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!align=left {{table heading style}} |Product description
||
YjcV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; 

Component of [[:Category:Complex:D-allose ABC transporter|D-allose ABC transporter]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Allose transport, membrane component<ref name='LIB:EcoGene'/>
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!align=left {{table heading style}} |EC number (for enzymes)
||


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===Notes===


==Function==
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<protect>
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.28859.Z46ab1bbcada3e-->
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!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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|

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GO:0005215
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transporter activity
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR001851
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F
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Seeded from [[EcoCyc]] (v14.0)
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complete 
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GO:0005886
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plasma membrane
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0997
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C
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Seeded from [[EcoCyc]] (v14.0)
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complete 
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|

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GO:0005886
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plasma membrane
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-1003
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C
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Seeded from [[EcoCyc]] (v14.0)
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complete 
|- 
|

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GO:0006810
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transport
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR001851
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P
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Seeded from [[EcoCyc]] (v14.0)
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complete 
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|

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GO:0006810
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transport
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0813
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P
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Seeded from [[EcoCyc]] (v14.0)
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complete 
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|

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GO:0008643
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carbohydrate transport
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0762
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P
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Seeded from [[EcoCyc]] (v14.0)
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complete 
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|

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GO:0016020
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membrane
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR001851
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C
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Seeded from [[EcoCyc]] (v14.0)
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complete 
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|

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GO:0016020
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membrane
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0472
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C
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Seeded from [[EcoCyc]] (v14.0)
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complete 
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|

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GO:0016021
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integral to membrane
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0812
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C
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Seeded from [[EcoCyc]] (v14.0)
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complete 
|- 
|

|
GO:0016021
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integral to membrane
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GO_REF:0000023
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IEA: Inferred from Electronic Annotation
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SP_SL:SL-9909
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C
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Seeded from [[EcoCyc]] (v14.0)
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complete 

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<span id="Interactions"></span><big>'''Interactions'''</big>
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!|Partner Type!!Partner!!Notes!!References!!Evidence
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Protein
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Subunits of [[:Category:Complex:D-allose ABC transporter|D-allose ABC transporter]] 
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could be indirect 
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|
 

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===Notes===


==Localization==
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!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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plasma membrane
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C-terminus localized in the cytoplasm with 9 predicted transmembrane domains
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Daley et al. (2005) <ref name=PMID:15919996/>
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|
 
|- 
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plasma membrane
|
 
|
 
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From EcoCyc<ref name='LIB:EcoCyc11.1'/> 
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===Notes===


==Structure and Physical Properties==
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<protect>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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!align=left {{table heading style}} |Name
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!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=YJCV-MONOMER at EcoCyc] 
<pre>MGFTTRVKSE ASEKKPFNFA LFWDKYGTFF ILAIIVAIFG SLSPEYFLTT NNITQIFVQS
SVTVLIGMGE FFAILVAGID LSVGAILALS GMVTAKLMLA GVDPFLAAMI GGVLVGGALG
AINGCLVNWT GLHPFIITLG TNAIFRGITL VISDANSVYG FSFDFVNFFA ASVIGIPVPV
IFSLIVALIL WFLTTRMRLG RNIYALGGNK NSAFYSGIDV KFHILVVFII SGVCAGLAGV
VSTARLGAAE PLAGMGFETY AIASAIIGGT SFFGGKGRIF SVVIGGLIIG TINNGLNILQ
VQTYYQLVVM GGLIIAAVAL DRLISK</pre> 
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!align=left {{table heading style}} |Length
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326
|-
!align=left {{table heading style}} |Mol. Wt
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34.316 kDa
|-
!align=left {{table heading style}} |pI
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9.3 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
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28,420 - 28,670 (calc based on 8 Y, 3 W, and 2 C residues)

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<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
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<tr align="left" valign="top">
<td>

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!|Type!!Residues!!Description!!Notes!!References
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Domain
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52..318
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[http://pfam.janelia.org/family/PF02653 PF02653  Branched-chain amino acid transport system / permease component]
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PMID:19920124 

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</td>
<td>
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<motif_map/>
{{TMHMM Picture|alsC}}
</td>
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<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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!align=left {{table heading style}} |Structures
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<beststructure>
gene=alsC
taxon=562,83333
</beststructure>
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!align=left {{table heading style}} |Models
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View models at:
* [http://www.proteinmodelportal.org/query/uniprot/P32720 Protein Model Portal]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P32720 PSI-PRED (P32720)]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P32720 Genomes TO Protein (P32720)] (GTOP)

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</td><td></protect>
==== Structure figures ====


















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===Notes===


==Gene Product Resources==
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!|Resource type!!Source!!Notes/Reference

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<protect><!--Resources_notes--></protect>
===Notes===


==Accessions in Other Databases==
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!|Database!!Accession!!Notes
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/16131912 GI:16131912]
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Escherichia coli str. K-12 substr. MG1655 
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/NP_418510.1 GeneID:948594]
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Escherichia coli str. K-12 substr. MG1655 
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[[ASAP]]
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ASAP:ABE-0013392
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
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[http://www.uniprot.org/uniprot/P32720 UniProtKB/Swiss-Prot:P32720]
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Escherichia coli str. K-12 substr. MG1655 
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[[EcoCyc]]
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EcoCyc:EG11958
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[EcoGene]]
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EcoGene:EG11958
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
|- 
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[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=948594 GeneID:948594]
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Escherichia coli str. K-12 substr. MG1655 
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[[RegulonDB]]
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RegulonDB:ECK120001885
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[EchoBASE]]
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EchoBASE:EB1901
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 

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<protect><!--Accessions_notes--></protect>
===Notes===


==Links==
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!|Name!!URL!!Comments

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<noinclude>
==References==
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__NOTOC__
===Categories===
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[[Category:Proteins]]