bglB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

bglB

Gene Synonym(s)

ECK3714, b3721, JW3699, blgA[1]

Product Desc.

6-phospho-β-glucosidase B; cryptic[2][3]

Phospho-beta-glucosidase B; allows growth on arbutin or salicin when activated[4]

Product Synonyms(s)

cryptic phospho-beta-glucosidase B[1], B3721[2][1], BlgA[2][1], BglB[2][1], phospho-β-glucosidase B; cryptic[2][1] , ECK3714, JW3699, b3721

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): bglGFB[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

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bglB is part of the cryptic bglGFBH operon. The bgl operon promoter is silenced by H-NS, represssed by Fis and activated by CRP-cAMP. bglA, bglB and ascB are paralogs.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

bglB

Mnemonic

beta-Glucoside

Synonyms

ECK3714, b3721, JW3699, blgA[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

84.06 minutes 

MG1655: 3901724..3900312
<gbrowseImage> name=NC_000913:3900312..3901724 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3864069..3862675
<gbrowseImage> name=NC_012967:3862675..3864069 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3788645..3790057
<gbrowseImage> name=NC_012759:3788645..3790057 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3732980..3734392
<gbrowseImage> name=NC_007779:3732980..3734392 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3999308..3997896
<gbrowseImage> name=NC_010473:3997896..3999308 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔbglB (Keio:JW3699)

deletion

deletion

PMID:16738554

Shigen
CGSC10703[5]

bglB::Tn5KAN-I-SceI (FB21416)

Insertion at nt 353 in Minus orientation

PMID:15262929

E. coli Genome Project:FB21416

contains pKD46

bglB::Tn5KAN-I-SceI (FB21417)

Insertion at nt 353 in Minus orientation

PMID:15262929

E. coli Genome Project:FB21417

does not contain pKD46

bglB676::ΛlacZ

CGSC:46664

ΔbglB752::kan

PMID:16738554

CGSC:100186


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3699

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAGCATTTCCAGAAACATT

Primer 2:CCAGGTGCTTTAATGGTTATTTT

7A1

Kohara Phage

Genobase

PMID:3038334

5E3

Kohara Phage

Genobase

PMID:3038334

zid-501::Tn10

Linked marker

CAG18499 = CGSC7458[5]

est. P1 cotransduction: 37% [6]

rbsD296::Tn10

Linked marker

CAG18501 = CGSC7460[5]

est. P1 cotransduction: 32% [6]
Synonyms:zie-296::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10114

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10114

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000110

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948234

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0112

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012169

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

BglB

Synonyms

cryptic phospho-beta-glucosidase B[1], B3721[2][1], BlgA[2][1], BglB[2][1], phospho-β-glucosidase B; cryptic[2][1] , ECK3714, JW3699, b3721

Product description

6-phospho-β-glucosidase B; cryptic[2][3]

Phospho-beta-glucosidase B; allows growth on arbutin or salicin when activated[4]

EC number (for enzymes)

<protect></protect>

Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013781

F

Seeded from EcoCyc (v14.0)

complete

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001360

F

Seeded from EcoCyc (v14.0)

complete

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018120

F

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001360

P

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013781

P

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018120

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

P

Seeded from EcoCyc (v14.0)

complete

GO:0008706

6-phospho-beta-glucosidase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.2.1.86

F

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016798

hydrolase activity, acting on glycosyl bonds

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

F

Seeded from EcoCyc (v14.0)

complete

GO:0043169

cation binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013781

F

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yagA

PMID:16606699

Experiment(s):EBI-1146569

Protein

groL

PMID:16606699

Experiment(s):EBI-1146569

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MKAFPETFLW GGATAANQVE GAWQEDGKGI STSDLQPHGV MGKMEPRILG KENIKDVAID
FYHRYPEDIA LFAEMGFTCL RISIAWARIF PQGDEVEPNE AGLAFYDRLF DEMAQAGIKP
LVTLSHYEMP YGLVKNYGGW ANRAVIDHFE HYARTVFTRY QHKVALWLTF NEINMSLHAP
FTGVGLAEES GEAEVYQAIH HQLVASARAV KACHSLLPEA KIGNMLLGGL VYPLTCQPQD
MLQAMEENRR WMFFGDVQAR GQYPGYMQRF FRDHNITIEM TESDAEDLKH TVDFISFSYY
MTGCVSHDES INKNAQGNIL NMIPNPHLKS SEWGWQIDPV GLRVLLNTLW DRYQKPLFIV
ENGLGAKDSV EADGSIQDDY RIAYLNDHLV QVNEAIADGV DIMGYTSWGP IDLVSASHSQ
MSKRYGFIYV DRDDNGEGSL TRTRKKSFGW YAEVIKTRGL SLKKITIKAP
Length

470

Mol. Wt

53.161 kDa

pI

5.6 (calculated)

Extinction coefficient

91,790 - 92,290 (calc based on 21 Y, 11 W, and 4 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..460

PF00232 Glycosyl hydrolase family 1

PMID:19920124

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=bglB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131589

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948234

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012169

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P11988

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10114

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10114

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948234

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000110

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0112

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

6a

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

3a

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

bglGFB

Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3901704..3901744 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3721 (EcoliWiki Page)

NCBI GEO profiles for bglB

microarray

GenExpDB:b3721 (EcoliWiki Page)

Summary of data for bglB from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

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Notes

Accessions Related to bglB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10114

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0112

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3721

EcoGene

EcoGene:EG10114

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000110

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012169

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014637 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021767 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G36890 (score: 1.000; bootstrap: 99%)
  • AT1G26560 (score: 0.321)
  • AT5G54570 (score: 0.314)
  • AT3G18080 (score: 0.278)
  • AT5G44640 (score: 0.269)
  • AT2G44450 (score: 0.266)
  • AT5G42260 (score: 0.264)
  • AT5G24540 (score: 0.261)
  • AT3G18070 (score: 0.259)
  • AT5G24550 (score: 0.258)
  • AT3G60140 (score: 0.251)
  • AT2G44480 (score: 0.249)
  • AT3G60130 (score: 0.245)
  • AT2G25630 (score: 0.229)
  • AT2G44460 (score: 0.226)
  • AT1G61820 (score: 0.211)
  • AT3G60120 (score: 0.199)
  • AT2G44490 (score: 0.198)
  • AT1G51470 (score: 0.194)
  • AT1G61810 (score: 0.192)
  • AT1G47600 (score: 0.189)
  • AT4G21760 (score: 0.187)
  • AT4G27830 (score: 0.174)
  • AT2G32860 (score: 0.173)
  • AT1G75940 (score: 0.173)
  • AT1G02850 (score: 0.170)
  • AT4G22100 (score: 0.163)
  • AT3G21370 (score: 0.163)
  • AT3G62750 (score: 0.162)
  • AT1G66280 (score: 0.162)
  • AT4G27820 (score: 0.159)
  • AT5G28510 (score: 0.158)
  • AT3G03640 (score: 0.155)
  • AT3G09260 (score: 0.155)
  • AT5G25980 (score: 0.145)
  • AT1G60090 (score: 0.145)
  • AT1G66270 (score: 0.144)
  • AT1G52400 (score: 0.140)
  • AT3G62740 (score: 0.135)
  • AT2G44470 (score: 0.134)
  • AT1G45191 (score: 0.133)
  • AT5G26000 (score: 0.131)
  • AT1G51490 (score: 0.064)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020185 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000006868 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000027139 (score: 0.218)
  • ENSBTAP00000019297 (score: 0.194)
  • ENSBTAP00000018586 (score: 0.183)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037225 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017103 (score: 1.000; bootstrap: 100%)
  • WBGene00016848 (score: 0.756)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025530 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000007651 (score: 0.295)
  • ENSCAFP00000024306 (score: 0.226)
  • ENSCAFP00000023599 (score: 0.195)
  • ENSCAFP00000009488 (score: 0.069)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010721 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000017340 (score: 0.284)
  • ENSCINP00000010375 (score: 0.195)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-233 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-260 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-050522-351 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-351 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036659 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21974-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020127 (score: 1.000; bootstrap: 86%)
  • ENSGALP00000027517 (score: 0.129)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000264162 (score: 1.000; bootstrap: 100%)
  • ENSP00000255481 (score: 0.119)
  • ENSP00000257408 (score: 0.115)
  • ENSP00000343490 (score: 0.074)
  • ENSP00000314501 (score: 0.061)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016070 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000022434 (score: 0.123)
  • ENSMMUP00000022970 (score: 0.074)
  • ENSMMUP00000011579 (score: 0.073)
  • ENSMMUP00000007357 (score: 0.066)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000001160 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000000673 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000012038 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000025712 (score: 0.198)
  • ENSMODP00000012043 (score: 0.177)

From Inparanoid:20070104

Mus musculus

  • MGI:104576 (score: 1.000; bootstrap: 100%)
  • MGI:2183549 (score: 1.000; bootstrap: 100%)
  • MGI:1101771 (score: 0.191)
  • MGI:1932466 (score: 0.179)

From Inparanoid:20070104

Oryza gramene

  • Q8L7J2 (score: 0.345)
  • Q5N863 (score: 1.000; bootstrap: 99%)
  • Q5Z9Z0 (score: 0.336)
  • Q75I93 (score: 0.319)
  • Q7XKV2 (score: 0.317)
  • Q94HQ6 (score: 0.317)
  • Q7XFU8 (score: 0.317)
  • Q5QMT0 (score: 0.312)
  • Q42975 (score: 0.312)
  • Q7XKV5 (score: 0.311)
  • Q7XKV4 (score: 0.308)
  • Q40025 (score: 0.304)
  • Q75I94 (score: 0.292)
  • Q7F9K4 (score: 0.289)
  • Q7XSK0 (score: 0.277)
  • Q7XPY7 (score: 0.272)
  • Q53RI4 (score: 0.269)
  • Q7XSK2 (score: 0.264)
  • Q93ZK6 (score: 0.257)
  • Q93XR2 (score: 0.247)
  • Q84YK7 (score: 0.236)
  • Q9ZP27 (score: 0.235)
  • Q41761 (score: 0.231)
  • Q7EXZ4 (score: 0.229)
  • Q41290 (score: 0.224)
  • Q9FYS3 (score: 0.223)
  • Q53WW9 (score: 0.220)
  • P49235 (score: 0.220)
  • Q60DX8 (score: 0.219)
  • Q75IT1 (score: 0.210)
  • Q38786 (score: 0.205)
  • Q75IS8 (score: 0.181)
  • Q5JK35 (score: 0.176)
  • Q7EXZ5 (score: 0.155)
  • Q8RZL1 (score: 0.119)
  • Q6L597 (score: 0.101)
  • Q60DY5 (score: 0.077)
  • Q60DY1 (score: 0.062)
  • Q53NF0 (score: 0.058)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021379 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000027525 (score: 0.178)
  • ENSPTRP00000009827 (score: 0.098)
  • ENSPTRP00000027469 (score: 0.089)
  • ENSPTRP00000012316 (score: 0.056)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000004908 (score: 1.000; bootstrap: 98%)
  • ENSRNOP00000001449 (score: 0.116)
  • ENSRNOP00000012308 (score: 0.062)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137179 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000127724 (score: 0.303)
  • NEWSINFRUP00000176887 (score: 0.301)
  • NEWSINFRUP00000160250 (score: 0.258)
  • NEWSINFRUP00000160851 (score: 0.189)
  • NEWSINFRUP00000140554 (score: 0.174)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016023001 (score: 1.000; bootstrap: 99%)
  • GSTENP00008351001 (score: 0.669)
  • GSTENP00000778001 (score: 0.431)
  • GSTENP00016903001 (score: 0.273)
  • GSTENP00026550001 (score: 0.161)
  • GSTENP00018857001 (score: 0.137)
  • GSTENP00002637001 (score: 0.068)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044233 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000034726 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000041823 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000032580 (score: 0.527)
  • ENSXETP00000036983 (score: 0.217)
  • ENSXETP00000028010 (score: 0.160)

From Inparanoid:20070104

Shigella flexneri

BGLB

From SHIGELLACYC


Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00232 Glycosyl hydrolase family 1

Superfamily (EcoliWiki Page)

SUPERFAMILY:51445

EcoCyc

EcoCyc:EG10114

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10114

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000110

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0112

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012169

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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