yhdZ:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:46:52Z

touch

← Older revision		Revision as of 20:46, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 3422291..3423049<br /><gbrowseImage>		W3110: 3422291..3423049<br /><gbrowseImage>
	name=~~AC_000091~~:3422291..3423049		name=NC_007779:3422291..3423049
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|3421291\|3424049\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|3421291\|3424049\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|3422291\|3423049\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|3422291\|3423049\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 340:		Line 340:
	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=947763 GeneID:947763]~~		RegulonDB:ECK120002394
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120002394~~		[http://www.ncbi.nlm.nih.gov/gene?term=947763 GeneID:947763]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:29:39Z

touch

← Older revision		Revision as of 07:29, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="Y46a9f1c632cdb" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9f1c632cdb" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
Line 172:		Line 172:
	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="B46a9f1c6e6c48" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9f1c6e6c48" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 194:		Line 194:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="M46a9f1c73b324" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9f1c73b324" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 234:		Line 234:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="R4e04ca3be769b" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R4e04ca3be769b" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
Line 255:		Line 255:
	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="Z46a9f1c7eefee" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a9f1c7eefee" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
Line 321:		Line 321:
	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="U46a9f1c89679c" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9f1c89679c" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG12837 ~~ECOCYC:EG12837]~~		EcoCyc:EG12837
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG12837~~ EcoGene:EG12837]		EcoGene:EG12837
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
Line 345:		Line 345:
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120002394
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB2686
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0010738
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
Line 364:		Line 385:
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="Z46a70d16cc154" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a70d16cc154" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T20:17:11Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK3258, b3271, JW3239''<ref name='LIB:Riley_2006'/>
+''ECK3258, b3271, JW3239''<ref name='LIB:Riley_2006'/>, JW3239''
 |- class="tableEdit_footer"
@@ Line 324: / Line 324: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T22:21:32Z

Bulk deleting accessions.

@@ Line 273: / Line 273: @@
 Primer 2:CCATGGATTACCTGCGATAAAAA
 |-
+|
@@ Line 293: / Line 302: @@
 est. P1 cotransduction: 76% <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zhb-3082::Tn10, zhd-3082::Tn10
 |- class="tableEdit_footer"
@@ Line 324: / Line 324: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:23:04Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:23, 2 September 2011
Line 293:		Line 293:
	est. P1 cotransduction: 76% <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: 76% <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zhb-3082::Tn10, zhd-3082::Tn10		Synonyms:zhb-3082::Tn10, zhd-3082::Tn10
			\|-
			\|
			[[:Category:Kohara_Phage:6G9\|6G9]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=530 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T20:45:17Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 20:45, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12837 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12837 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|3419458\|3422216\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|3419458\|3422216\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|3420458\|3421216\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|3420458\|3421216\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG12837 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG12837 EcoCyc Sequence Dump]
	\|-		\|-
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|3307606\|~~NC_3308364~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|3307606\|3308364\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|3307606\|~~NC_3308364~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|3307606\|3308364\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|3421291\|3424049\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|3421291\|3424049\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|3422291\|3423049\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|3422291\|3423049\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 150:		Line 150:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|3516687\|3520477\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|3516687\|3520477\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|3516687\|3520477\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|3516687\|3520477\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:35:26Z

Edited by wikibot

← Older revision		Revision as of 17:35, 27 June 2011
Line 129:		Line 129:
	W3110: 3422291..3423049<br /><gbrowseImage>		W3110: 3422291..3423049<br /><gbrowseImage>
	name=AC_000091:3422291..3423049		name=AC_000091:3422291..3423049
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:54:50Z

Edited by wikibot

← Older revision		Revision as of 05:54, 26 June 2011
Line 145:		Line 145:
	DH10B: 3518203..3518961<br /><gbrowseImage>		DH10B: 3518203..3518961<br /><gbrowseImage>
	name=NC_010473:3518203..3518961		name=NC_010473:3518203..3518961
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:41:57Z

Edited by wikibot

← Older revision		Revision as of 22:41, 24 June 2011
Line 78:		Line 78:
	MG1655: 3420458..3421216<br /><gbrowseImage>		MG1655: 3420458..3421216<br /><gbrowseImage>
	name=NC_000913:3420458..3421216		name=NC_000913:3420458..3421216
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 129:		Line 129:
	W3110: 3422291..3423049<br /><gbrowseImage>		W3110: 3422291..3423049<br /><gbrowseImage>
	name=AC_000091:3422291..3423049		name=AC_000091:3422291..3423049
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 145:		Line 145:
	DH10B: 3518203..3518961<br /><gbrowseImage>		DH10B: 3518203..3518961<br /><gbrowseImage>
	name=NC_010473:3518203..3518961		name=NC_010473:3518203..3518961
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Adding section & Genetic interactions table to Gene pages.

2011-06-24T17:32:44Z

Adding section & Genetic interactions table to Gene pages.

@@ Line 16: / Line 16: @@
 |{{Sub}}[[#Sequence Features|Sequence Features]]
 |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
 |{{Sub}}[[#Genetic Resources  |Genetic Resources]]
 |{{Sub}}[[#Accessions in Other Databases |Accessions]]
@@ Line 222: / Line 223: @@
 ===Notes===
 ==Genetic Resources==