yaeI:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:37:21Z

touch

← Older revision		Revision as of 20:37, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 185069..184257<br /><gbrowseImage>		W3110: 185069..184257<br /><gbrowseImage>
	name=~~AC_000091~~:184257..185069		name=NC_007779:184257..185069
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
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	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|183257\|186069\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|183257\|186069\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|184257\|185069\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|184257\|185069\|FASTA Dump}}
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:19:19Z

touch

← Older revision		Revision as of 07:19, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="F46a9a9dfa7cb1" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="F46a9a9dfa7cb1" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="H46a9a9e051b02" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9a9e051b02" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="N46a9a9e092901" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9a9e092901" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="R4e04c5dcee130" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R4e04c5dcee130" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="G46a9a9e13b8a3" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46a9a9e13b8a3" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="U46a9a9e1c5226" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9a9e1c5226" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG12337 ~~ECOCYC:EG12337]~~		EcoCyc:EG12337
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG12337~~ EcoGene:EG12337]		EcoGene:EG12337
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120002212
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB2241
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0000559
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="M46a677182702d" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a677182702d" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

Joncrz: Table edited by Joncrz via TableEdit

2012-01-20T17:33:07Z

Table edited by Joncrz via TableEdit

← Older revision		Revision as of 17:33, 20 January 2012
Line 199:		Line 199:
	\|-		\|-
	\|		\|
	~~Δ~~yaeI (Keio:JW5014)		''yaeI(del)'' (Keio:JW5014)
	\|		\|
	deletion		deletion
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	PMID:16738554		PMID:16738554
	\|		\|
	[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]~~<br>~~[http://cgsc2.biology.yale.edu/Strain.php?ID=109410 CGSC11129]<ref name='LIB:cgsc'/>		[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]

			[http://cgsc2.biology.yale.edu/Strain.php?ID=109410 CGSC11129]<ref name='LIB:cgsc'/>
	\|		\|

	\|-		\|-
	\|		\|
	~~Δ~~yaeI::kan		''yaeI(del)''::kan
	\|		\|
	deletion		deletion
Line 233:		Line 235:
	\|-		\|-
	\|		\|
	''~~Δ~~yaeI778::kan''		''yaeI778(del)::kan''
	\|		\|

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-22T20:04:19Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK0163, b0164, JW5014''<ref name='LIB:Riley_2006'/>
+''ECK0163, b0164, JW5014''<ref name='LIB:Riley_2006'/>, JW5014''
 |- class="tableEdit_footer"
@@ Line 384: / Line 384: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T21:50:09Z

Bulk deleting accessions.

@@ Line 332: / Line 332: @@
+|
 [http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=119 Genobase]
+|
 PMID:3038334
@@ Line 353: / Line 362: @@
 est. P1 cotransduction: 11% <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zae-502::Tn10
 |- class="tableEdit_footer"
@@ Line 384: / Line 384: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:07:30Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:07, 2 September 2011
Line 323:		Line 323:
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=118 Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=118 Genobase]
			\|
			PMID:3038334
			\|-
			\|
			[[:Category:Kohara_Phage:21C8\|21C8]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=119 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334
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	\|-		\|-
	\|		\|
	[[:Category:Kohara_Phage:~~21C8~~\|~~21C8~~]]		[[:Category:Kohara_Phage:12D5\|12D5]]
	\|		\|
	Kohara Phage		Kohara Phage
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=~~119~~ Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=120 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:07:21Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:07, 2 September 2011
Line 314:		Line 314:
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=117 Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=117 Genobase]
			\|
			PMID:3038334
			\|-
			\|
			[[:Category:Kohara_Phage:4E4\|4E4]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=118 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334
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	\|-		\|-
	\|		\|
	[[:Category:Kohara_Phage:~~4E4~~\|~~4E4~~]]		[[:Category:Kohara_Phage:21C8\|21C8]]
	\|		\|
	Kohara Phage		Kohara Phage
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=~~118~~ Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=119 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:07:13Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:07, 2 September 2011
Line 307:		Line 307:

	Primer 2:CCaACCAGTTCCAGCATCGTTAC		Primer 2:CCaACCAGTTCCAGCATCGTTAC
			\|-
			\|
			[[:Category:Kohara_Phage:9H2\|9H2]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=117 Genobase]
			\|
			PMID:3038334
	\|-		\|-
	\|		\|
Line 328:		Line 337:
	\|-		\|-
	\|		\|
	[[:Category:Kohara_Phage:~~9H2~~\|~~9H2~~]]		[[:Category:Kohara_Phage:4E4\|4E4]]
	\|		\|
	Kohara Phage		Kohara Phage
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=~~117~~ Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=118 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:07:00Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:07, 2 September 2011
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	est. P1 cotransduction: 11% <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: 11% <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zae-502::Tn10		Synonyms:zae-502::Tn10
			\|-
			\|
			[[:Category:Kohara_Phage:9H2\|9H2]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=117 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T20:32:18Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 20:32, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12337 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12337 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|183257\|186069\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|183257\|186069\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|184257\|185069\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|184257\|185069\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG12337 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG12337 EcoCyc Sequence Dump]
	\|-		\|-
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|184256\|~~NC_185068~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|184256\|185068\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|184256\|~~NC_185068~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|184256\|185068\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|183257\|186069\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|183257\|186069\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|184257\|185069\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|184257\|185069\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|156737\|160797\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|156737\|160797\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|156737\|160797\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|156737\|160797\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"