sroH:Evolution - Revision history

127.0.0.1: touch the Evolution_families_table table.

2010-07-30T21:08:51Z

touch the Evolution_families_table table.

← Older revision		Revision as of 21:08, 30 July 2010
Line 58:		Line 58:
	****************************************************************************************** -->{{Evolution_families_table_help}}		****************************************************************************************** -->{{Evolution_families_table_help}}
	{\| id="G4a82e94966e30" class=" tableEdit Evolution_families_table"		{\| id="G4a82e94966e30" class=" tableEdit Evolution_families_table"
			\|- {{table heading style}}
	\|-		!\|Database!!Accession!!Notes
	~~!align=left {{table heading style}} \|COG~~
	\|-
	~~!align=left {{table heading style}} \|GTOP~~
	\|-
	~~!align=left~~ {{table heading style}} ~~\|Interpro~~
	\|-
	!~~align=left {{table heading style}}~~ \|~~Pfam~~
	\|-
	!~~align=left {{table heading style}} \|SCOP Domain~~
	\|-
	!~~align=left {{table heading style}} \|SMART~~
	\|-
	!~~align=left {{table heading style}} \|SuperFamily~~
	\|-
	!~~align=left {{table heading style}} \|TIGRFAMs~~

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30&page=165314&pagename={{FULLPAGENAMEE}}&type=1&template=Evolution_families_table edit table]</span>		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30&page=165314&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> \|\| \|\|
	\|}		\|}
	<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30--></protect>		<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30--></protect>

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-06-17T22:22:58Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 22:22, 17 June 2010
Line 30:		Line 30:
	****************************************************************************************** -->{{Evolution_homologs_table_help}}		****************************************************************************************** -->{{Evolution_homologs_table_help}}
	{\| id="G4a82e949657d4" class=" tableEdit Evolution_homologs_table"		{\| id="G4a82e949657d4" class=" tableEdit Evolution_homologs_table"
	\|-		\|- {{table heading style}}
	!\|Organism!!Homologs (Statistics)!!Comments		!\|Organism!!Homologs (Statistics)!!Comments

Line 57:		Line 57:
	*		*
	****************************************************************************************** -->{{Evolution_families_table_help}}		****************************************************************************************** -->{{Evolution_families_table_help}}
	{\| id="G4a82e94966e30" class=" tableEdit Evolution_families_table"		{\| id="G4a82e94966e30" class=" tableEdit Evolution_families_table"

	\|-		\|-
	!align=left \|COG		!align=left {{table heading style}} \|COG
	\|-		\|-
	!align=left \|GTOP		!align=left {{table heading style}} \|GTOP
	\|-		\|-
	!align=left \|Interpro		!align=left {{table heading style}} \|Interpro
	\|-		\|-
	!align=left \|Pfam		!align=left {{table heading style}} \|Pfam
	\|-		\|-
	!align=left \|SCOP Domain		!align=left {{table heading style}} \|SCOP Domain
	\|-		\|-
	!align=left \|SMART		!align=left {{table heading style}} \|SMART
	\|-		\|-
	!align=left \|SuperFamily		!align=left {{table heading style}} \|SuperFamily
	\|-		\|-
	!align=left \|TIGRFAMs		!align=left {{table heading style}} \|TIGRFAMs

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
Line 94:		Line 94:
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="C4a82e94967fa4" class=" tableEdit Links_table"		{\| id="C4a82e94967fa4" class=" tableEdit Links_table"
	\|-		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

127.0.0.1: Update TableEdit tables.

2010-01-10T00:47:49Z

Update TableEdit tables.

← Older revision		Revision as of 00:47, 10 January 2010
Line 29:		Line 29:
	*		*
	****************************************************************************************** -->{{Evolution_homologs_table_help}}		****************************************************************************************** -->{{Evolution_homologs_table_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="G4a82e949657d4" class=" tableEdit Evolution_homologs_table"
	\|- ~~{{table heading style}}~~		\|-
	!\|Organism!!Homologs (Statistics)!!Comments		!\|Organism!!Homologs (Statistics)!!Comments

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e949657d4&page=165314&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_homologs_table edit table] \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e949657d4&page=165314&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_homologs_table edit table]</span> \|\| \|\|
	\|}		\|}
	<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e949657d4--></protect>		<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e949657d4--></protect>
Line 57:		Line 57:
	*		*
	****************************************************************************************** -->{{Evolution_families_table_help}}		****************************************************************************************** -->{{Evolution_families_table_help}}
	{\|~~border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="G4a82e94966e30" class=" tableEdit Evolution_families_table"

	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|COG		!align=left \|COG
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|GTOP		!align=left \|GTOP
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Interpro		!align=left \|Interpro
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Pfam		!align=left \|Pfam
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|SCOP Domain		!align=left \|SCOP Domain
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|SMART		!align=left \|SMART
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|SuperFamily		!align=left \|SuperFamily
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|TIGRFAMs		!align=left \|TIGRFAMs

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30&page=165314&pagename={{FULLPAGENAMEE}}&type=1&template=Evolution_families_table edit table]		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30&page=165314&pagename={{FULLPAGENAMEE}}&type=1&template=Evolution_families_table edit table]</span>
	\|}		\|}
	<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30--></protect>		<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30--></protect>
Line 93:		Line 93:
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="C4a82e94967fa4" class=" tableEdit Links_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.C4a82e94967fa4&page=165314&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.C4a82e94967fa4&page=165314&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> \|\| \|\|
	\|}		\|}
	<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.C4a82e94967fa4--></protect>		<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.C4a82e94967fa4--></protect>

127.0.0.1: Tables added by batch script.

2009-08-12T16:09:45Z

Tables added by batch script.

← Older revision		Revision as of 16:09, 12 August 2009
Line 1:		Line 1:
			__NOTOC__
	<!--		<!--
	***************************************************************************************************************************************************		***************************************************************************************************************************************************
Line 9:		Line 10:
	***************************************************************************************************************************************************		***************************************************************************************************************************************************
	-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>		-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
	~~<noinclude>~~{{TabsTop}}		{{TabsTop}}
	{{Tab\|Quickview\|~~sroH~~}}{{Tab\|Gene\|~~sroH~~}}{{Tab\|Gene Product(s)\|~~sroH~~}}{{Tab\|Expression\|~~sroH~~}}{{Tab On\|Evolution\|~~sroH~~}}{{Tab\|On One Page\|~~sroH~~}}{{TabsBottom}}		{{Tab\|Quickview\|_sroH}}{{Tab\|Gene\|_sroH}}{{Tab\|Gene Product(s)\|_sroH}}{{Tab\|Expression\|_sroH}}{{Tab On\|Evolution\|_sroH}}{{Tab\|On One Page\|_sroH}}{{TabsBottom}}
	{\|		{\|
	\|-		\|-
Line 19:		Line 20:
	\|{{Sub}}[[Talk:{{PAGENAMEE}}\| Suggestions]]		\|{{Sub}}[[Talk:{{PAGENAMEE}}\| Suggestions]]
	\|}		\|}
	~~</noinclude>~~
	==Homologs in Other Organisms==		==Homologs in Other Organisms==
	{{BacktoTop}}		{{BacktoTop}}
			<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e949657d4-->
			<!--
			******************************************************************************************
			*
			* PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table.
			*
			****************************************************************************************** -->{{Evolution_homologs_table_help}}
			{\|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
			\|- {{table heading style}}
			!\|Organism!!Homologs (Statistics)!!Comments

			\|-class='sortbottom'
			\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e949657d4&page=165314&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_homologs_table edit table] \|\| \|\|
			\|}
			<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e949657d4--></protect>

	===Do-It-Yourself Web Tools===		===Do-It-Yourself Web Tools===
	*[http://130.14.29.110/BLAST/ BLAST]		*[http://130.14.29.110/BLAST/ BLAST]
	*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]		*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
	*[http://inparanoid.sbc.su.se/cgi-bin/~~gene_search~~.~~cgi~~?id=&idtype=all&~~all_or_selection~~=~~all~~&~~specieslist~~=1&~~scorelimit~~=0.05~~&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection~~ InParanoid]		*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id={{{REFSEQ}}}&idtype=all&start=on&species=All&conf=0.05 InParanoid]
	*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]		*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]

Line 37:		Line 50:
	==Families==		==Families==
	{{BacktoTop}}		{{BacktoTop}}
	<!--box uid=~~421aa90e079fa326b6494f812ad13e79~~.~~52771~~.~~T46ac1f7daeed2~~-->		<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30-->
	<!--		<!--
	******************************************************************************************		******************************************************************************************
	*		*
	* PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table.		* PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table.
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->{{Evolution_families_table_help}}
	{\|~~class~~ = ~~'sortable'~~ {{~~Prettytable~~}} id=~~'214443'~~		{\|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
	\|- {{~~table_heading_style~~}}
	!~~Database~~!!~~Accession~~!~~!Notes~~		\|-
			!align=left {{table heading style}} \|COG
			\|-
			!align=left {{table heading style}} \|GTOP
			\|-
			!align=left {{table heading style}} \|Interpro
			\|-
			!align=left {{table heading style}} \|Pfam
			\|-
			!align=left {{table heading style}} \|SCOP Domain
			\|-
			!align=left {{table heading style}} \|SMART
			\|-
			!align=left {{table heading style}} \|SuperFamily
	\|-		\|-
	\|		!align=left {{table heading style}} \|TIGRFAMs
	~~[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM\|EcoliWiki Page]])~~
	\|
	~~[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00588 PFAM:PF00588]~~
	\|

	\|-class='sortbottom'		\|-class='sortbottom'
	\|[{{SERVER}}{{SCRIPTPATH}}~~/index.php~~?title=Special:TableEdit&id=~~421aa90e079fa326b6494f812ad13e79~~.~~52771~~.~~T46ac1f7daeed2~~&page=~~52771~~&pagename={{FULLPAGENAMEE}} edit table] ~~\|\| \|\|~~		\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30&page=165314&pagename={{FULLPAGENAMEE}}&type=1&template=Evolution_families_table edit table]
	\|}		\|}
	<!--box uid=~~421aa90e079fa326b6494f812ad13e79~~.~~52771~~.~~T46ac1f7daeed2~~-->		<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.G4a82e94966e30--></protect>

	<protect><!--Families_notes--></protect>		<protect><!--Families_notes--></protect>
	===Notes===		===Notes===
Line 65:		Line 86:
	==Links==		==Links==
	{{BacktoTop}}		{{BacktoTop}}
	<!--box uid=~~421aa90e079fa326b6494f812ad13e79~~.~~105362~~.~~D46b294e8a6186~~-->		<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.C4a82e94967fa4-->
	<!--		<!--
	******************************************************************************************		******************************************************************************************
Line 77:		Line 98:

	\|-class='sortbottom'		\|-class='sortbottom'
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=~~421aa90e079fa326b6494f812ad13e79~~.~~105362~~.~~D46b294e8a6186~~&page=~~105362~~&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] \|\| \|\|		\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165314.C4a82e94967fa4&page=165314&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] \|\| \|\|
	\|}		\|}
	<!--box uid=~~421aa90e079fa326b6494f812ad13e79~~.~~105362~~.~~D46b294e8a6186~~-->		<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165314.C4a82e94967fa4--></protect>


	==References==		==References==
	{{BacktoTop}}		{{BacktoTop}}
	{{RefHelp}}		{{RefHelp}}
	<references />		<references/>
	~~__NOTOC__~~
	===Categories===		===Categories===
	{{BacktoTop}}		{{BacktoTop}}

127.0.0.1: To make the tables.

2009-08-12T16:09:45Z

To make the tables.

New page

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|sroH}}{{Tab|Gene|sroH}}{{Tab|Gene Product(s)|sroH}}{{Tab|Expression|sroH}}{{Tab On|Evolution|sroH}}{{Tab|On One Page|sroH}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Homologs in Other Organisms|Homologs]]
|{{Sub}}[[#Families|Families]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Homologs in Other Organisms==
{{BacktoTop}}

===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]

<protect></protect>
===Notes===

==Families==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='214443'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00588 PFAM:PF00588]
|

|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52771.T46ac1f7daeed2&page=52771&pagename={{FULLPAGENAMEE}} edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.105362.D46b294e8a6186&page=105362&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}