selU:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:32:13Z

touch

← Older revision		Revision as of 20:32, 19 September 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="C46a9b22b53696" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9b22b53696" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	\|		\|
	W3110: 530450..529356<br /><gbrowseImage>		W3110: 530450..529356<br /><gbrowseImage>
	name=~~AC_000091~~:529356..530450		name=NC_007779:529356..530450
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|ecoli_W3110\|~~AC_000091~~\|528356\|531450\|GBrowse(W3110)}}		{{GBrowseLink\|ecoli_W3110\|NC_007779\|528356\|531450\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|ecoli_W3110\|~~AC_000091~~\|529356\|530450\|FASTA Dump}}		{{GBrowseFastaLink\|ecoli_W3110\|NC_007779\|529356\|530450\|FASTA Dump}}
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:15:06Z

touch

← Older revision		Revision as of 07:15, 27 May 2013
Line 320:		Line 320:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="N4e04c3af219e6" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N4e04c3af219e6" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="U46a9b22d6caa6" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9b22d6caa6" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11768~~ EcoCyc:EG11768]		EcoCyc:EG11768
	\|		\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://www.ecoli-york.org EchoBASE] (~~[[EchoBASE~~\|EcoliWiki Page~~]])		[[EchoBASE]]
	\|		\|
	~~[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1718~~ EchoBASE:EB1718]		EchoBASE:EB1718
	\|		\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
Line 449:		Line 449:
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG11768~~ EcoGene:EG11768]		EcoGene:EG11768
	\|		\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	~~[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] (~~[[ASAP~~\|EcoliWikiPage~~]])		[[ASAP]]
	\|		\|
	~~[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001740&formSubmitReturn=1~~ ASAP:ABE-0001740]		ASAP:ABE-0001740
	\|		\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120001704
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-22T23:07:23Z

Refreshing information from GenBank record NC_000913

← Older revision		Revision as of 23:07, 22 September 2011
Line 46:		Line 46:
	!align=left {{table_heading_style}} \|Synonyms		!align=left {{table_heading_style}} \|Synonyms
	\|\|		\|\|
	''ECK0496, b0503, JW0491'', ybbB<ref name='LIB:Riley_2006'/>		''ECK0496, b0503, JW0491'', ybbB<ref name='LIB:Riley_2006'/>, JW0491, selE, ybbB''

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11768 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11768 EcoCyc]
	{{GBrowseLink\|~~MG1655~~\|NC_000913\|528356\|531450\|GBrowse(MG1655)}}		{{GBrowseLink\|ecoli\|NC_000913\|528356\|531450\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~MG1655~~\|NC_000913\|529356\|530450\|FASTA Dump}}		{{GBrowseFastaLink\|ecoli\|NC_000913\|529356\|530450\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG11768 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG11768 EcoCyc Sequence Dump]
	\|-		\|-
Line 102:		Line 102:

	\|		\|
	{{GBrowseLink\|BW2952\|~~NC_012759~~\|432115\|~~433209~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|012759\|432115\|NC_433209\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~NC_012759~~\|432115\|~~433209~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|012759\|432115\|NC_433209\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|		\|
	{{GBrowseLink\|~~W3110~~\|AC_000091\|528356\|531450\|GBrowse(W3110)}}		{{GBrowseLink\|ecoli_W3110\|AC_000091\|528356\|531450\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~W3110~~\|AC_000091\|529356\|530450\|FASTA Dump}}		{{GBrowseFastaLink\|ecoli_W3110\|AC_000091\|529356\|530450\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~DH10B~~\|NC_010473\|466499\|471969\|GBrowse(DH10B)}}		{{GBrowseLink\|ecoli_DH10B\|NC_010473\|466499\|471969\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~DH10B~~\|NC_010473\|466499\|471969\|FASTA Dump}}		{{GBrowseFastaLink\|ecoli_DH10B\|NC_010473\|466499\|471969\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
Line 359:		Line 359:

	Primer 2:CCCCGCGCCTTAACCCATTCCGC		Primer 2:CCCCGCGCCTTAACCCATTCCGC
			\|-
			\|
			[[:Category:Kohara_Phage:8E4\|8E4]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=155 Genobase]
			\|
			PMID:3038334
			\|-
			\|
			[[:Category:Kohara_Phage:9E5\|9E5]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=156 Genobase]
			\|
			PMID:3038334
	\|-		\|-
	\|		\|
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	\|		\|

			\|-
			\|
			[http://ecocyc.org EcoCyc] ([[EcoCyc\|EcoliWiki Page]])
			\|
			[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11768 ECOCYC:EG11768]
			\|
			Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
			\|
			[http://www.ncbi.nlm.nih.gov/gene?term=947063 GeneID:947063]
			\|
			Escherichia coli str. K-12 substr. MG1655

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T20:25:17Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 20:25, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11768 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11768 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|528356\|531450\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|528356\|531450\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|529356\|530450\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|529356\|530450\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG11768 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG11768 EcoCyc Sequence Dump]
	\|-		\|-
Line 102:		Line 102:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|432115\|~~NC_433209~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|432115\|433209\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|432115\|~~NC_433209~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|432115\|433209\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|528356\|531450\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|528356\|531450\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|529356\|530450\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|529356\|530450\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|466499\|471969\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|466499\|471969\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|466499\|471969\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|466499\|471969\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T16:44:41Z

Edited by wikibot

← Older revision		Revision as of 16:44, 27 June 2011
Line 113:		Line 113:
	W3110: 530450..529356<br /><gbrowseImage>		W3110: 530450..529356<br /><gbrowseImage>
	name=AC_000091:529356..530450		name=AC_000091:529356..530450
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:06:46Z

Edited by wikibot

← Older revision		Revision as of 05:06, 26 June 2011
Line 129:		Line 129:
	DH10B: 469781..468687<br /><gbrowseImage>		DH10B: 469781..468687<br /><gbrowseImage>
	name=NC_010473:468687..469781		name=NC_010473:468687..469781
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:08:05Z

Edited by wikibot

← Older revision		Revision as of 22:08, 24 June 2011
Line 78:		Line 78:
	MG1655: 530450..529356<br /><gbrowseImage>		MG1655: 530450..529356<br /><gbrowseImage>
	name=NC_000913:529356..530450		name=NC_000913:529356..530450
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 113:		Line 113:
	W3110: 530450..529356<br /><gbrowseImage>		W3110: 530450..529356<br /><gbrowseImage>
	name=AC_000091:529356..530450		name=AC_000091:529356..530450
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 129:		Line 129:
	DH10B: 469781..468687<br /><gbrowseImage>		DH10B: 469781..468687<br /><gbrowseImage>
	name=NC_010473:468687..469781		name=NC_010473:468687..469781
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Adding section & Genetic interactions table to Gene pages.

2011-06-24T17:04:48Z

Adding section & Genetic interactions table to Gene pages.

@@ Line 16: / Line 16: @@
 |{{Sub}}[[#Sequence Features|Sequence Features]]
 |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
 |{{Sub}}[[#Genetic Resources  |Genetic Resources]]
 |{{Sub}}[[#Accessions in Other Databases |Accessions]]
@@ Line 308: / Line 309: @@
 ===Notes===
 ==Genetic Resources==

127.0.0.1: Fixing Blattner deletion strains in alleles table.

2011-03-09T22:23:26Z

Fixing Blattner deletion strains in alleles table.

← Older revision		Revision as of 22:23, 9 March 2011
Line 199:		Line 199:
	\|-		\|-
	\|		\|
	[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN-I-SceI] (~~FB20190~~)		[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN-I-SceI] (FB20189)
	\|		\|
	Insertion at nt 1013 in Minus orientation		Insertion at nt 1013 in Minus orientation
Line 216:		Line 216:
	\|-		\|-
	\|		\|
	[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN-I-SceI] (~~FB20191~~)		[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN-I-SceI] (FB20189)
	\|		\|
	Insertion at nt 1013 in Minus orientation		Insertion at nt 1013 in Minus orientation

127.0.0.1: Fixing Blattner deletion strains in alleles table.

2011-03-09T22:12:17Z

Fixing Blattner deletion strains in alleles table.

← Older revision		Revision as of 22:12, 9 March 2011
Line 199:		Line 199:
	\|-		\|-
	\|		\|
	[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN]		[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN-I-SceI] (FB20190)
	\|		\|
			Insertion at nt 1013 in Minus orientation
	\|		\|

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	\|		\|
	PMID:~~12519969~~		PMID:15262929
	\|		\|
	[~~[asapstrains~~:~~ASAP\|ASAP]~~]		[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20190]
	\|		\|
	~~At position 1013 in Minus orientation,~~ does not contain ~~plasmid~~ [[pKD46]]~~.<br />ASAP strain name: FB20190~~		does not contain [[pKD46]]
	\|-		\|-
	\|		\|
	[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN]		[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0001740 ybbB::Tn5KAN-I-SceI] (FB20191)
	\|		\|
			Insertion at nt 1013 in Minus orientation
	\|		\|

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	\|		\|
	PMID:~~12519969~~		PMID:15262929
	\|		\|
	[~~[asapstrains~~:~~ASAP\|ASAP]~~]		[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20191]
	\|		\|
	~~At position 1013 in Minus orientation,~~ contains ~~plasmid~~ [[pKD46]]~~.<br />ASAP strain name: FB20191~~		contains [[pKD46]]
	\|-		\|-
	\|		\|