lipB:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:34:38Z

touch

← Older revision		Revision as of 20:34, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 662700..662059<br /><gbrowseImage>		W3110: 662700..662059<br /><gbrowseImage>
	name=~~AC_000091~~:662059..662700		name=NC_007779:662059..662700
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
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	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|661059\|663700\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|661059\|663700\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|662059\|662700\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|662059\|662700\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=945217 GeneID:945217]~~		RegulonDB:ECK120001540
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120001540~~		[http://www.ncbi.nlm.nih.gov/gene?term=945217 GeneID:945217]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:17:45Z

touch

← Older revision		Revision as of 07:17, 27 May 2013
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	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="D46a9b55fa3ef8" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D46a9b55fa3ef8" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="N46a9b5604bafe" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9b5604bafe" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="I4e04be6968a81" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I4e04be6968a81" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="Q46a9b56132456" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46a9b56132456" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="T46a9b561b9d5c" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="T46a9b561b9d5c" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG11591 ~~ECOCYC:EG11591]~~		EcoCyc:EG11591
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG11591~~ EcoGene:EG11591]		EcoGene:EG11591
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120001540
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB1549
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0002160
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="I46a6d2886b7f8" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a6d2886b7f8" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

Wameza: Table edited by Wameza via TableEdit

2013-02-04T16:20:37Z

Table edited by Wameza via TableEdit

← Older revision		Revision as of 16:20, 4 February 2013
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	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="H46a9b5608b07e" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9b5608b07e" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
	\|-		\|-
	\|		\|
	~~Δ~~lipB (Keio:JW5089)		''lipB(del)'' (Keio:JW5089)
	\|		\|
	deletion		deletion
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	\|		\|
	seeded from [http://www.uniprot.org/uniprot/P60720 UniProt:P60720]		seeded from [http://www.uniprot.org/uniprot/P60720 UniProt:P60720]
			\|-
			\|
			CAG45114 ''lipB769(del)''::FRTKanFRT
			\|
			Deletion
			\|

			\|
			Sigma<sup>E</sup> activity
			\|
			Decrease in sigma<sup>E</sup> activity
			\|
			PMID:23224554
			\|
			Parental Strain: CAG45114
			Experimental Strain: SMR15295
			\|
			See table S11 for full experimental calculations

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-22T23:32:25Z

Refreshing information from GenBank record NC_000913

@@ Line 408: / Line 408: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T20:35:37Z

Bulk deleting accessions.

@@ Line 357: / Line 357: @@
 Primer 2:CCAGCGGTAATATATTCGAAGTC
 |-
+|
@@ Line 377: / Line 386: @@
 est. P1 cotransduction: 19% <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zbf-3057::Tn10 nnnThe Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.
 |- class="tableEdit_footer"
@@ Line 408: / Line 408: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:19:52Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:19, 2 September 2011
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	est. P1 cotransduction: 19% <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: 19% <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zbf-3057::Tn10 nnnThe Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.		Synonyms:zbf-3057::Tn10 nnnThe Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.
			\|-
			\|
			[[:Category:Kohara_Phage:1G6\|1G6]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=168 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T20:08:11Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 20:08, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11591 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11591 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|659860\|662501\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|659860\|662501\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|660860\|661501\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|660860\|661501\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG11591 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG11591 EcoCyc Sequence Dump]
	\|-		\|-
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	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|563620\|~~NC_564261~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|563620\|564261\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|563620\|~~NC_564261~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|563620\|564261\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|661059\|663700\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|661059\|663700\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|662059\|662700\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|662059\|662700\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|598910\|602115\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|598910\|602115\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|598910\|602115\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|598910\|602115\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|712170\|715375\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|712170\|715375\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|712170\|715375\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|712170\|715375\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T16:46:58Z

Edited by wikibot

← Older revision		Revision as of 16:46, 27 June 2011
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	W3110: 662700..662059<br /><gbrowseImage>		W3110: 662700..662059<br /><gbrowseImage>
	name=AC_000091:662059..662700		name=AC_000091:662059..662700
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:09:03Z

Edited by wikibot

← Older revision		Revision as of 05:09, 26 June 2011
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	DH10B: 600833..600192<br /><gbrowseImage>		DH10B: 600833..600192<br /><gbrowseImage>
	name=NC_010473:600192..600833		name=NC_010473:600192..600833
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
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	DH10B: 714093..713452<br /><gbrowseImage>		DH10B: 714093..713452<br /><gbrowseImage>
	name=NC_010473:713452..714093		name=NC_010473:713452..714093
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:09:42Z

Edited by wikibot

← Older revision		Revision as of 22:09, 24 June 2011
Line 78:		Line 78:
	MG1655: 661501..660860<br /><gbrowseImage>		MG1655: 661501..660860<br /><gbrowseImage>
	name=NC_000913:660860..661501		name=NC_000913:660860..661501
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
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	W3110: 662700..662059<br /><gbrowseImage>		W3110: 662700..662059<br /><gbrowseImage>
	name=AC_000091:662059..662700		name=AC_000091:662059..662700
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
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	DH10B: 600833..600192<br /><gbrowseImage>		DH10B: 600833..600192<br /><gbrowseImage>
	name=NC_010473:600192..600833		name=NC_010473:600192..600833
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
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	DH10B: 714093..713452<br /><gbrowseImage>		DH10B: 714093..713452<br /><gbrowseImage>
	name=NC_010473:713452..714093		name=NC_010473:713452..714093
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>