fucU:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:44:26Z

touch

← Older revision		Revision as of 20:44, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 2937544..2937966<br /><gbrowseImage>		W3110: 2937544..2937966<br /><gbrowseImage>
	name=~~AC_000091~~:2937544..2937966		name=NC_007779:2937544..2937966
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|2936544\|2938966\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|2936544\|2938966\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|2937544\|2937966\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|2937544\|2937966\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 373:		Line 373:
	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=945842 GeneID:945842]~~		RegulonDB:ECK120000348
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120000348~~		[http://www.ncbi.nlm.nih.gov/gene?term=945842 GeneID:945842]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:26:59Z

touch

← Older revision		Revision as of 07:26, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="G46a9e6a60cc82" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46a9e6a60cc82" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
Line 172:		Line 172:
	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="G46a9e6a6bc90f" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46a9e6a6bc90f" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 194:		Line 194:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="V46a9e6a70f525" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V46a9e6a70f525" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 268:		Line 268:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="Q4e04bbb42d28b" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q4e04bbb42d28b" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
Line 289:		Line 289:
	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="H46a9e6a7beb2d" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9e6a7beb2d" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
Line 354:		Line 354:
	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="A46a9e6a862aa1" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A46a9e6a862aa1" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG10355 ~~ECOCYC:EG10355]~~		EcoCyc:EG10355
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG10355~~ EcoGene:EG10355]		EcoGene:EG10355
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
Line 378:		Line 378:
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120000348
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB0350
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0009193
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
Line 397:		Line 418:
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="K46a702f232d5c" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a702f232d5c" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T18:33:55Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK2799, b2804, JW2775''<ref name='LIB:Riley_2006'/>
+''ECK2799, b2804, JW2775''<ref name='LIB:Riley_2006'/>, JW2775''
 |- class="tableEdit_footer"
@@ Line 357: / Line 357: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T20:10:41Z

Bulk deleting accessions.

@@ Line 307: / Line 307: @@
 Primer 2:CCtGGTGTTACCCCTTTTTTTAA
 |-
+|
@@ Line 326: / Line 335: @@
+|
 est. P1 cotransduction: 61% <ref name='LIB:Nichols_linked_Tn'/>
 |- class="tableEdit_footer"
@@ Line 357: / Line 357: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:12:04Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:12, 2 September 2011
Line 326:		Line 326:
	\|		\|
	est. P1 cotransduction: 61% <ref name='LIB:Nichols_linked_Tn'/>		est. P1 cotransduction: 61% <ref name='LIB:Nichols_linked_Tn'/>
			\|-
			\|
			[[:Category:Kohara_Phage:9A12\|9A12]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=458 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:59:50Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:59, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10355 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10355 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|2935910\|2938332\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|2935910\|2938332\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|2936910\|2937332\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|2936910\|2937332\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG10355 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG10355 EcoCyc Sequence Dump]
	\|-		\|-
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|2824058\|~~NC_2824480~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|2824058\|2824480\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|2824058\|~~NC_2824480~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|2824058\|2824480\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|2936544\|2938966\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|2936544\|2938966\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|2937544\|2937966\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|2937544\|2937966\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 150:		Line 150:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|3029944\|3032054\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|3029944\|3032054\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|3029944\|3032054\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|3029944\|3032054\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:26:22Z

Edited by wikibot

← Older revision		Revision as of 17:26, 27 June 2011
Line 129:		Line 129:
	W3110: 2937544..2937966<br /><gbrowseImage>		W3110: 2937544..2937966<br /><gbrowseImage>
	name=AC_000091:2937544..2937966		name=AC_000091:2937544..2937966
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:46:56Z

Edited by wikibot

← Older revision		Revision as of 05:46, 26 June 2011
Line 145:		Line 145:
	DH10B: 3030788..3031210<br /><gbrowseImage>		DH10B: 3030788..3031210<br /><gbrowseImage>
	name=NC_010473:3030788..3031210		name=NC_010473:3030788..3031210
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:36:15Z

Edited by wikibot

← Older revision		Revision as of 22:36, 24 June 2011
Line 78:		Line 78:
	MG1655: 2936910..2937332<br /><gbrowseImage>		MG1655: 2936910..2937332<br /><gbrowseImage>
	name=NC_000913:2936910..2937332		name=NC_000913:2936910..2937332
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 129:		Line 129:
	W3110: 2937544..2937966<br /><gbrowseImage>		W3110: 2937544..2937966<br /><gbrowseImage>
	name=AC_000091:2937544..2937966		name=AC_000091:2937544..2937966
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 145:		Line 145:
	DH10B: 3030788..3031210<br /><gbrowseImage>		DH10B: 3030788..3031210<br /><gbrowseImage>
	name=NC_010473:3030788..3031210		name=NC_010473:3030788..3031210
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Adding section & Genetic interactions table to Gene pages.

2011-06-24T16:30:45Z

Adding section & Genetic interactions table to Gene pages.

@@ Line 16: / Line 16: @@
 |{{Sub}}[[#Sequence Features|Sequence Features]]
 |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
 |{{Sub}}[[#Genetic Resources  |Genetic Resources]]
 |{{Sub}}[[#Accessions in Other Databases |Accessions]]
@@ Line 256: / Line 257: @@
 ===Notes===
 ==Genetic Resources==