dinB:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:37:42Z

touch

← Older revision		Revision as of 20:37, 19 September 2013
Line 129:		Line 129:
	\|		\|
	W3110: 250898..251953<br /><gbrowseImage>		W3110: 250898..251953<br /><gbrowseImage>
	name=~~AC_000091~~:250898..251953		name=NC_007779:250898..251953
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 135:		Line 135:

	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|249898\|252953\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|249898\|252953\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|250898\|251953\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|250898\|251953\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|-		\|-
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	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=944922 GeneID:944922]~~		RegulonDB:ECK120002735
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120002735~~		[http://www.ncbi.nlm.nih.gov/gene?term=944922 GeneID:944922]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:19:42Z

touch

← Older revision		Revision as of 07:19, 27 May 2013
Line 68:		Line 68:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="O46a9ab5b8e4d7" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O46a9ab5b8e4d7" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="M46a9ab5c383cc" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9ab5c383cc" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 195:		Line 195:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="S46a9ab5c79313" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9ab5c79313" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 611:		Line 611:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="G4e04b9d83d5b6" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G4e04b9d83d5b6" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="N46a9ab5d22bd7" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9ab5d22bd7" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="V46a9ab5dacd15" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V46a9ab5dacd15" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~G6115 ~~ECOCYC:G6115]~~		EcoCyc:G6115
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG13141~~ EcoGene:EG13141]		EcoGene:EG13141
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120002735
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB2935
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0000789
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="A46a678908ee59" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A46a678908ee59" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

Joncrz: Table edited by Joncrz via TableEdit

2012-01-20T17:52:16Z

Table edited by Joncrz via TableEdit

← Older revision		Revision as of 17:52, 20 January 2012
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	\|-		\|-
	\|		\|
	~~Δ~~dinB (Keio:JW0221)		''dinB(del)'' (Keio:JW0221)
	\|		\|
	deletion		deletion
Line 212:		Line 212:
	PMID:16738554		PMID:16738554
	\|		\|
	[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]~~<br>~~[http://cgsc2.biology.yale.edu/Strain.php?ID=106737 CGSC8456]<ref name='LIB:cgsc'/>		[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]

			[http://cgsc2.biology.yale.edu/Strain.php?ID=106737 CGSC8456]<ref name='LIB:cgsc'/>
	\|		\|

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	\|-		\|-
	\|		\|
	''~~Δ~~dinB749::kan''		''dinB749(del)::kan''
	\|		\|

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-22T20:18:32Z

Refreshing information from GenBank record NC_000913

@@ Line 47: / Line 47: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK0232, b0231, JW0221, dinP''<ref name='LIB:Riley_2006'/>
+''ECK0232, b0231, JW0221, dinP''<ref name='LIB:Riley_2006'/>, dinP''
 |- class="tableEdit_footer"
@@ Line 698: / Line 698: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:53:57Z

Bulk deleting accessions.

@@ Line 648: / Line 648: @@
 Primer 2:CCTAATCCCAGCACCAGTTGTCT
 |-
+|
@@ Line 667: / Line 676: @@
+|
 est. P1 cotransduction: 74% <ref name='LIB:Nichols_linked_Tn'/>
 |- class="tableEdit_footer"
@@ Line 698: / Line 698: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:09:32Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:09, 2 September 2011
Line 667:		Line 667:
	\|		\|
	est. P1 cotransduction: 74% <ref name='LIB:Nichols_linked_Tn'/>		est. P1 cotransduction: 74% <ref name='LIB:Nichols_linked_Tn'/>
			\|-
			\|
			[[:Category:Kohara_Phage:8F9\|8F9]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=127 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:54:24Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:54, 17 August 2011
Line 85:		Line 85:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6115 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6115 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|249898\|252953\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|249898\|252953\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|250898\|251953\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|250898\|251953\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=G6115 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=G6115 EcoCyc Sequence Dump]
	\|-		\|-
Line 119:		Line 119:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|250897\|~~NC_251952~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|250897\|251952\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|250897\|~~NC_251952~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|250897\|251952\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 135:		Line 135:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|249898\|252953\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|249898\|252953\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|250898\|251953\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|250898\|251953\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 151:		Line 151:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|222892\|228167\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|222892\|228167\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|222892\|228167\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|222892\|228167\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: /Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php

2011-08-15T21:55:18Z

/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php

← Older revision		Revision as of 21:55, 15 August 2011
Line 546:		Line 546:

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	~~Other~~
	\|		\|
	xx		xx
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	F172A		F172A
	\|		\|

	\|		\|

127.0.0.1: Edited by wikibot

2011-06-27T16:39:39Z

Edited by wikibot

← Older revision		Revision as of 16:39, 27 June 2011
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	W3110: 250898..251953<br /><gbrowseImage>		W3110: 250898..251953<br /><gbrowseImage>
	name=AC_000091:250898..251953		name=AC_000091:250898..251953
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:01:37Z

Edited by wikibot

← Older revision		Revision as of 05:01, 26 June 2011
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	DH10B: 225002..226057<br /><gbrowseImage>		DH10B: 225002..226057<br /><gbrowseImage>
	name=NC_010473:225002..226057		name=NC_010473:225002..226057
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>