atpG:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:49:29Z

touch

← Older revision		Revision as of 20:49, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 3718416..3719279<br /><gbrowseImage>		W3110: 3718416..3719279<br /><gbrowseImage>
	name=~~AC_000091~~:3718416..3719279		name=NC_007779:3718416..3719279
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|3717416\|3720279\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|3717416\|3720279\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|3718416\|3719279\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|3718416\|3719279\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 369:		Line 369:
	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=948243 GeneID:948243]~~		RegulonDB:ECK120000100
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120000100~~		[http://www.ncbi.nlm.nih.gov/gene?term=948243 GeneID:948243]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:32:26Z

touch

← Older revision		Revision as of 07:32, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="Y46a9fd878e67d" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9fd878e67d" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
Line 172:		Line 172:
	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="I46a9fd88526c3" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9fd88526c3" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 207:		Line 207:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="H46a9fd889d2a5" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9fd889d2a5" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 264:		Line 264:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="J4e04b802ce0dd" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J4e04b802ce0dd" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="C46a9fd8961142" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9fd8961142" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="N46a9fd8a0c52e" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9fd8a0c52e" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG10104 ~~ECOCYC:EG10104]~~		EcoCyc:EG10104
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG10104~~ EcoGene:EG10104]		EcoGene:EG10104
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
Line 374:		Line 374:
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120000100
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB0102
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0012211
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
Line 393:		Line 414:
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="I46a717ac056c1" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a717ac056c1" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T21:46:27Z

Refreshing information from GenBank record NC_000913

@@ Line 353: / Line 353: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:36:16Z

Bulk deleting accessions.

@@ Line 303: / Line 303: @@
 Primer 2:CCAACCGCGGCGGCCCCCGAGAC
 |-
+|
@@ Line 322: / Line 331: @@
 est. P1 cotransduction: 60% <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zie-296::Tn10
 |- class="tableEdit_footer"
@@ Line 353: / Line 353: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:29:26Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:29, 2 September 2011
Line 322:		Line 322:
	est. P1 cotransduction: 60% <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: 60% <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zie-296::Tn10		Synonyms:zie-296::Tn10
			\|-
			\|
			[[:Category:Kohara_Phage:2A1\|2A1]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=560 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:42:27Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:42, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10104 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10104 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|3914425\|3917288\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|3914425\|3917288\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|3915425\|3916288\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|3915425\|3916288\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG10104 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG10104 EcoCyc Sequence Dump]
	\|-		\|-
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|3803758\|~~NC_3804621~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|3803758\|3804621\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|3803758\|~~NC_3804621~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|3803758\|3804621\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|3717416\|3720279\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|3717416\|3720279\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|3718416\|3719279\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|3718416\|3719279\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 150:		Line 150:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|4011283\|4015598\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|4011283\|4015598\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|4011283\|4015598\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|4011283\|4015598\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:43:46Z

Edited by wikibot

← Older revision		Revision as of 17:43, 27 June 2011
Line 129:		Line 129:
	W3110: 3718416..3719279<br /><gbrowseImage>		W3110: 3718416..3719279<br /><gbrowseImage>
	name=AC_000091:3718416..3719279		name=AC_000091:3718416..3719279
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T06:24:01Z

Edited by wikibot

← Older revision		Revision as of 06:24, 26 June 2011
Line 145:		Line 145:
	DH10B: 4013872..4013009<br /><gbrowseImage>		DH10B: 4013872..4013009<br /><gbrowseImage>
	name=NC_010473:4013009..4013872		name=NC_010473:4013009..4013872
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:47:48Z

Edited by wikibot

← Older revision		Revision as of 22:47, 24 June 2011
Line 78:		Line 78:
	MG1655: 3916288..3915425<br /><gbrowseImage>		MG1655: 3916288..3915425<br /><gbrowseImage>
	name=NC_000913:3915425..3916288		name=NC_000913:3915425..3916288
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 129:		Line 129:
	W3110: 3718416..3719279<br /><gbrowseImage>		W3110: 3718416..3719279<br /><gbrowseImage>
	name=AC_000091:3718416..3719279		name=AC_000091:3718416..3719279
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 145:		Line 145:
	DH10B: 4013872..4013009<br /><gbrowseImage>		DH10B: 4013872..4013009<br /><gbrowseImage>
	name=NC_010473:4013009..4013872		name=NC_010473:4013009..4013872
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Adding section & Genetic interactions table to Gene pages.

2011-06-24T16:14:59Z

Adding section & Genetic interactions table to Gene pages.

@@ Line 16: / Line 16: @@
 |{{Sub}}[[#Sequence Features|Sequence Features]]
 |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
 |{{Sub}}[[#Genetic Resources  |Genetic Resources]]
 |{{Sub}}[[#Accessions in Other Databases |Accessions]]
@@ Line 252: / Line 253: @@
 ===Notes===
 ==Genetic Resources==