argA:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:44:31Z

touch

← Older revision		Revision as of 20:44, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 2947898..2949229<br /><gbrowseImage>		W3110: 2947898..2949229<br /><gbrowseImage>
	name=~~AC_000091~~:2947898..2949229		name=NC_007779:2947898..2949229
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|2946898\|2950229\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|2946898\|2950229\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|2947898\|2949229\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|2947898\|2949229\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=947289 GeneID:947289]~~		RegulonDB:ECK120000059
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120000059~~		[http://www.ncbi.nlm.nih.gov/gene?term=947289 GeneID:947289]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:27:04Z

touch

← Older revision		Revision as of 07:27, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="K46a9e6ff48a2a" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9e6ff48a2a" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
Line 172:		Line 172:
	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="X46a9e70004884" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X46a9e70004884" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 207:		Line 207:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="I46a9e7004b9db" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9e7004b9db" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 538:		Line 538:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="A4e04b77dd16f0" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A4e04b77dd16f0" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
Line 559:		Line 559:
	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="A46a9e70107243" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A46a9e70107243" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="M46a9e7019f8e9" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9e7019f8e9" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG10063 ~~ECOCYC:EG10063]~~		EcoCyc:EG10063
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG10063~~ EcoGene:EG10063]		EcoGene:EG10063
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
Line 648:		Line 648:
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120000059
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB0061
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0009245
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
Line 667:		Line 688:
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="M46a7034466271" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a7034466271" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T18:36:36Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK2814, b2818, JW2786, Arg1, Arg2''<ref name='LIB:Riley_2006'/>
+''ECK2814, b2818, JW2786, Arg1, Arg2''<ref name='LIB:Riley_2006'/>, Arg2, argB''
 |- class="tableEdit_footer"
@@ Line 627: / Line 627: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:31:11Z

Bulk deleting accessions.

@@ Line 577: / Line 577: @@
 Primer 2:CCgCCTAAATCCGCCATCAACAC
 |-
+|
@@ Line 596: / Line 605: @@
+|
 est. P1 cotransduction: 89% <ref name='LIB:Nichols_linked_Tn'/>
 |- class="tableEdit_footer"
@@ Line 627: / Line 627: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:12:23Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:12, 2 September 2011
Line 596:		Line 596:
	\|		\|
	est. P1 cotransduction: 89% <ref name='LIB:Nichols_linked_Tn'/>		est. P1 cotransduction: 89% <ref name='LIB:Nichols_linked_Tn'/>
			\|-
			\|
			[[:Category:Kohara_Phage:10B6\|10B6]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=459 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:41:01Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:41, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10063 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10063 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|2946264\|2949595\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|2946264\|2949595\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|2947264\|2948595\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|2947264\|2948595\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG10063 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG10063 EcoCyc Sequence Dump]
	\|-		\|-
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|2834412\|~~NC_2835743~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|2834412\|2835743\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|2834412\|~~NC_2835743~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|2834412\|2835743\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|2946898\|2950229\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|2946898\|2950229\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|2947898\|2949229\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|2947898\|2949229\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 150:		Line 150:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|3038472\|3045127\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|3038472\|3045127\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|3038472\|3045127\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|3038472\|3045127\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:26:40Z

Edited by wikibot

← Older revision		Revision as of 17:26, 27 June 2011
Line 129:		Line 129:
	W3110: 2947898..2949229<br /><gbrowseImage>		W3110: 2947898..2949229<br /><gbrowseImage>
	name=AC_000091:2947898..2949229		name=AC_000091:2947898..2949229
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:47:11Z

Edited by wikibot

← Older revision		Revision as of 05:47, 26 June 2011
Line 145:		Line 145:
	DH10B: 3041134..3042465<br /><gbrowseImage>		DH10B: 3041134..3042465<br /><gbrowseImage>
	name=NC_010473:3041134..3042465		name=NC_010473:3041134..3042465
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:36:28Z

Edited by wikibot

← Older revision		Revision as of 22:36, 24 June 2011
Line 78:		Line 78:
	MG1655: 2947264..2948595<br /><gbrowseImage>		MG1655: 2947264..2948595<br /><gbrowseImage>
	name=NC_000913:2947264..2948595		name=NC_000913:2947264..2948595
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 129:		Line 129:
	W3110: 2947898..2949229<br /><gbrowseImage>		W3110: 2947898..2949229<br /><gbrowseImage>
	name=AC_000091:2947898..2949229		name=AC_000091:2947898..2949229
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 145:		Line 145:
	DH10B: 3041134..3042465<br /><gbrowseImage>		DH10B: 3041134..3042465<br /><gbrowseImage>
	name=NC_010473:3041134..3042465		name=NC_010473:3041134..3042465
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Adding section & Genetic interactions table to Gene pages.

2011-06-24T16:12:47Z

Adding section & Genetic interactions table to Gene pages.

@@ Line 16: / Line 16: @@
 |{{Sub}}[[#Sequence Features|Sequence Features]]
 |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
 |{{Sub}}[[#Genetic Resources  |Genetic Resources]]
 |{{Sub}}[[#Accessions in Other Databases |Accessions]]
@@ Line 526: / Line 527: @@
 ===Notes===
 ==Genetic Resources==