arcB:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:46:33Z

touch

← Older revision		Revision as of 20:46, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 3352880..3350544<br /><gbrowseImage>		W3110: 3352880..3350544<br /><gbrowseImage>
	name=~~AC_000091~~:3350544..3352880		name=NC_007779:3350544..3352880
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
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	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|3349544\|3353880\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|3349544\|3353880\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|3350544\|3352880\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|3350544\|3352880\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=947887 GeneID:947887]~~		RegulonDB:ECK120000058
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120000058~~		[http://www.ncbi.nlm.nih.gov/gene?term=947887 GeneID:947887]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:29:18Z

touch

← Older revision		Revision as of 07:29, 27 May 2013
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	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="J46a9f04f56393" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46a9f04f56393" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="M46a9f0501575a" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9f0501575a" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="Q4e04b779dd050" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q4e04b779dd050" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="G46a9f0511cdea" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46a9f0511cdea" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="E46a9f051b8115" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E46a9f051b8115" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG10062 ~~ECOCYC:EG10062]~~		EcoCyc:EG10062
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG10062~~ EcoGene:EG10062]		EcoGene:EG10062
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120000058
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB0060
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0010537
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="F46a70bc230b1a" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="F46a70bc230b1a" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

Wameza: Table edited by Wameza via TableEdit

2013-02-04T23:16:04Z

Table edited by Wameza via TableEdit

← Older revision		Revision as of 23:16, 4 February 2013
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	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="D46a9f0505dc4c" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D46a9f0505dc4c" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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	\|-		\|-
	\|		\|
	~~Δ~~arcB (Keio:JW5536)		''arcB(del)'' (Keio:JW5536)
	\|		\|
	deletion		deletion
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	PMID:16738554		PMID:16738554
	\|		\|
	[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=112244 CGSC11593]<ref name='LIB:cgsc'/>		[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br />[http://cgsc2.biology.yale.edu/Strain.php?ID=112244 CGSC11593]<ref name='LIB:cgsc'/>
	\|		\|

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	\|-		\|-
	\|		\|
	''~~Δ~~arcB738::kan''		''arcB738(del)''::kan
	\|		\|

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	\|		\|

			\|-
			\|
			CAG45114 ''arcB738(del)''::FRTKanFRT
			\|
			Deletion
			\|

			\|
			Sigma<sup>E</sup> activity
			\|
			Increase in sigma<sup>E</sup> activity
			\|
			PMID:23224554
			\|
			Parental Strain: CAG45114
			Experimental Strain: SMR15364
			\|
			See table S11 for full experimental results.

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T20:02:58Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK3200, b3210, JW5536''<ref name='LIB:Riley_2006'/>
+''ECK3200, b3210, JW5536''<ref name='LIB:Riley_2006'/>, JW5536''
 |- class="tableEdit_footer"
@@ Line 478: / Line 478: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:31:03Z

Bulk deleting accessions.

@@ Line 425: / Line 425: @@
+|
 [http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=523 Genobase]
+|
 PMID:3038334
@@ Line 447: / Line 456: @@
 est. P1 cotransduction: 59% <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zha-6::Tn10
 |- class="tableEdit_footer"
@@ Line 478: / Line 478: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:21:36Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:21, 2 September 2011
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	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
			\|
			PMID:3038334
			\|-
			\|
			[[:Category:Kohara_Phage:3G10\|3G10]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=523 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334
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	\|-		\|-
	\|		\|
	[[:Category:Kohara_Phage:~~3G10~~\|~~3G10~~]]		[[:Category:Kohara_Phage:8D6\|8D6]]
	\|		\|
	Kohara Phage		Kohara Phage
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=~~523~~ Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=524 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:21:29Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:21, 2 September 2011
Line 409:		Line 409:

	Primer 2:CCTTTTTTAGTGGCTTTTGCCAC		Primer 2:CCTTTTTTAGTGGCTTTTGCCAC
			\|-
			\|
			[[:Category:Kohara_Phage:7E3\|7E3]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
			\|
			PMID:3038334
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	[[:Category:Kohara_Phage:~~7E3~~\|~~7E3~~]]		[[:Category:Kohara_Phage:3G10\|3G10]]
	\|		\|
	Kohara Phage		Kohara Phage
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=~~522~~ Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=523 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:21:21Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:21, 2 September 2011
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	est. P1 cotransduction: 59% <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: 59% <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zha-6::Tn10		Synonyms:zha-6::Tn10
			\|-
			\|
			[[:Category:Kohara_Phage:7E3\|7E3]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:40:59Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:40, 17 August 2011
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	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10062 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10062 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|3347711\|3352047\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|3347711\|3352047\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|3348711\|3351047\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|3348711\|3351047\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG10062 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG10062 EcoCyc Sequence Dump]
	\|-		\|-
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	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|3235859\|~~NC_3238195~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|3235859\|3238195\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|3235859\|~~NC_3238195~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|3235859\|3238195\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|3349544\|3353880\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|3349544\|3353880\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|3350544\|3352880\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|3350544\|3352880\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|3441784\|3453464\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|3441784\|3453464\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|3441784\|3453464\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|3441784\|3453464\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:34:29Z

Edited by wikibot

← Older revision		Revision as of 17:34, 27 June 2011
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	W3110: 3352880..3350544<br /><gbrowseImage>		W3110: 3352880..3350544<br /><gbrowseImage>
	name=AC_000091:3350544..3352880		name=AC_000091:3350544..3352880
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>