araE:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:44:39Z

touch

← Older revision		Revision as of 20:44, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 2980838..2979420<br /><gbrowseImage>		W3110: 2980838..2979420<br /><gbrowseImage>
	name=~~AC_000091~~:2979420..2980838		name=NC_007779:2979420..2980838
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|2978420\|2981838\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|2978420\|2981838\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|2979420\|2980838\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|2979420\|2980838\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=947341 GeneID:947341]~~		RegulonDB:ECK120000052
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120000052~~		[http://www.ncbi.nlm.nih.gov/gene?term=947341 GeneID:947341]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:27:13Z

touch

← Older revision		Revision as of 07:27, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="T46a9e79c3fea3" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="T46a9e79c3fea3" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="Y46a9e79cf0022" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9e79cf0022" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 194:		Line 194:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="Y46a9e79d42ea4" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9e79d42ea4" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 336:		Line 336:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="A4e04b76f55e77" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A4e04b76f55e77" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="S46a9e79df2d6b" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9e79df2d6b" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="W46a9e79e97d1b" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9e79e97d1b" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG10056 ~~ECOCYC:EG10056]~~		EcoCyc:EG10056
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG10056~~ EcoGene:EG10056]		EcoGene:EG10056
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120000052
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB0054
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0009319
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="U46a703d58dde2" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a703d58dde2" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T18:40:55Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK2839, b2841, JW2809''<ref name='LIB:Riley_2006'/>
+''ECK2839, b2841, JW2809''<ref name='LIB:Riley_2006'/>, JW2809''
 |- class="tableEdit_footer"
@@ Line 434: / Line 434: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:30:37Z

Bulk deleting accessions.

@@ Line 382: / Line 382: @@
+|
 [http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=462 Genobase]
+|
 PMID:3038334
@@ Line 403: / Line 412: @@
 est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zgd-210::Tn10, zgf-210::Tn10
 |- class="tableEdit_footer"
@@ Line 434: / Line 434: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:13:03Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:13, 2 September 2011
Line 375:		Line 375:

	Primer 2:CCGACGCCGATATTTCTCAACTT		Primer 2:CCGACGCCGATATTTCTCAACTT
			\|-
			\|
			[[:Category:Kohara_Phage:8H3\|8H3]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=462 Genobase]
			\|
			PMID:3038334
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	[[:Category:Kohara_Phage:~~8H3~~\|~~8H3~~]]		[[:Category:Kohara_Phage:12H3\|12H3]]
	\|		\|
	Kohara Phage		Kohara Phage
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=~~462~~ Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=463 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T21:12:58Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 21:12, 2 September 2011
Line 394:		Line 394:
	est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zgd-210::Tn10, zgf-210::Tn10		Synonyms:zgd-210::Tn10, zgf-210::Tn10
			\|-
			\|
			[[:Category:Kohara_Phage:8H3\|8H3]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=462 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:40:54Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:40, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10056 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10056 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|2977786\|2981204\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|2977786\|2981204\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|2978786\|2980204\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|2978786\|2980204\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG10056 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG10056 EcoCyc Sequence Dump]
	\|-		\|-
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|2865934\|~~NC_2867352~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|2865934\|2867352\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|2865934\|~~NC_2867352~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|2865934\|2867352\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|2978420\|2981838\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|2978420\|2981838\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|2979420\|2980838\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|2979420\|2980838\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 150:		Line 150:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|3069820\|3076910\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|3069820\|3076910\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|3069820\|3076910\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|3069820\|3076910\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:27:14Z

Edited by wikibot

← Older revision		Revision as of 17:27, 27 June 2011
Line 129:		Line 129:
	W3110: 2980838..2979420<br /><gbrowseImage>		W3110: 2980838..2979420<br /><gbrowseImage>
	name=AC_000091:2979420..2980838		name=AC_000091:2979420..2980838
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:47:38Z

Edited by wikibot

← Older revision		Revision as of 05:47, 26 June 2011
Line 145:		Line 145:
	DH10B: 3074074..3072656<br /><gbrowseImage>		DH10B: 3074074..3072656<br /><gbrowseImage>
	name=NC_010473:3072656..3074074		name=NC_010473:3072656..3074074
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:36:45Z

Edited by wikibot

← Older revision		Revision as of 22:36, 24 June 2011
Line 78:		Line 78:
	MG1655: 2980204..2978786<br /><gbrowseImage>		MG1655: 2980204..2978786<br /><gbrowseImage>
	name=NC_000913:2978786..2980204		name=NC_000913:2978786..2980204
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 129:		Line 129:
	W3110: 2980838..2979420<br /><gbrowseImage>		W3110: 2980838..2979420<br /><gbrowseImage>
	name=AC_000091:2979420..2980838		name=AC_000091:2979420..2980838
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 145:		Line 145:
	DH10B: 3074074..3072656<br /><gbrowseImage>		DH10B: 3074074..3072656<br /><gbrowseImage>
	name=NC_010473:3072656..3074074		name=NC_010473:3072656..3074074
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>