amn:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:40:03Z

touch

← Older revision		Revision as of 20:40, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 2057198..2058652<br /><gbrowseImage>		W3110: 2057198..2058652<br /><gbrowseImage>
	name=~~AC_000091~~:2057198..2058652		name=NC_007779:2057198..2058652
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|2056198\|2059652\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|2056198\|2059652\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|2057198\|2058652\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|2057198\|2058652\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=946508 GeneID:946508]~~		RegulonDB:ECK120000035
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120000035~~		[http://www.ncbi.nlm.nih.gov/gene?term=946508 GeneID:946508]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:22:14Z

touch

← Older revision		Revision as of 07:22, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="U46a9d367cf4ac" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9d367cf4ac" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
Line 172:		Line 172:
	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="C46a9d3688358b" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9d3688358b" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 207:		Line 207:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="Q46a9d368c75ff" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46a9d368c75ff" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 281:		Line 281:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="A4e04b748045bb" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A4e04b748045bb" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="N46a9d3697b862" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9d3697b862" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="H46a9d36a196c0" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9d36a196c0" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG10039 ~~ECOCYC:EG10039]~~		EcoCyc:EG10039
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG10039~~ EcoGene:EG10039]		EcoGene:EG10039
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
Line 400:		Line 400:
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120000035
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB0037
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0006579
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="O46a6f0bb7cc1a" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O46a6f0bb7cc1a" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T11:42:04Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK1977, b1982, JW1963''<ref name='LIB:Riley_2006'/>
+''ECK1977, b1982, JW1963''<ref name='LIB:Riley_2006'/>, JW1963''
 |- class="tableEdit_footer"
@@ Line 379: / Line 379: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:28:57Z

Bulk deleting accessions.

@@ Line 327: / Line 327: @@
+|
 [http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=346 Genobase]
+|
 PMID:3038334
@@ Line 348: / Line 357: @@
 est. P1 cotransduction: 31% <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zee-3129::Tn10
 |- class="tableEdit_footer"
@@ Line 379: / Line 379: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:52:17Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:52, 2 September 2011
Line 320:		Line 320:

	Primer 2:CCTCGGAACGGCGGCTCATTAAA		Primer 2:CCTCGGAACGGCGGCTCATTAAA
			\|-
			\|
			[[:Category:Kohara_Phage:7D4\|7D4]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=346 Genobase]
			\|
			PMID:3038334
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	[[:Category:Kohara_Phage:~~7D4~~\|~~7D4~~]]		[[:Category:Kohara_Phage:9B2\|9B2]]
	\|		\|
	Kohara Phage		Kohara Phage
	\|		\|
	[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=~~346~~ Genobase]		[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=347 Genobase]
	\|		\|
	PMID:3038334		PMID:3038334

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:52:05Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:52, 2 September 2011
Line 339:		Line 339:
	est. P1 cotransduction: 31% <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: 31% <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zee-3129::Tn10		Synonyms:zee-3129::Tn10
			\|-
			\|
			[[:Category:Kohara_Phage:7D4\|7D4]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=346 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:40:25Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:40, 17 August 2011
Line 83:		Line 83:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|1945568\|~~NC_1947022~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|1945568\|1947022\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|1945568\|~~NC_1947022~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|1945568\|1947022\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 100:		Line 100:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10039 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10039 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|2052085\|2055539\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|2052085\|2055539\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|2053085\|2054539\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|2053085\|2054539\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG10039 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG10039 EcoCyc Sequence Dump]
	\|-		\|-
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|2056198\|2059652\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|2056198\|2059652\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|2057198\|2058652\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|2057198\|2058652\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 150:		Line 150:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|2141185\|2148455\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|2141185\|2148455\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|2141185\|2148455\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|2141185\|2148455\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:10:32Z

Edited by wikibot

← Older revision		Revision as of 17:10, 27 June 2011
Line 129:		Line 129:
	W3110: 2057198..2058652<br /><gbrowseImage>		W3110: 2057198..2058652<br /><gbrowseImage>
	name=AC_000091:2057198..2058652		name=AC_000091:2057198..2058652
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:32:38Z

Edited by wikibot

← Older revision		Revision as of 05:32, 26 June 2011
Line 145:		Line 145:
	DH10B: 2144093..2145547<br /><gbrowseImage>		DH10B: 2144093..2145547<br /><gbrowseImage>
	name=NC_010473:2144093..2145547		name=NC_010473:2144093..2145547
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:26:12Z

Edited by wikibot

← Older revision		Revision as of 22:26, 24 June 2011
Line 94:		Line 94:
	MG1655: 2053085..2054539<br /><gbrowseImage>		MG1655: 2053085..2054539<br /><gbrowseImage>
	name=NC_000913:2053085..2054539		name=NC_000913:2053085..2054539
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 129:		Line 129:
	W3110: 2057198..2058652<br /><gbrowseImage>		W3110: 2057198..2058652<br /><gbrowseImage>
	name=AC_000091:2057198..2058652		name=AC_000091:2057198..2058652
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
Line 145:		Line 145:
	DH10B: 2144093..2145547<br /><gbrowseImage>		DH10B: 2144093..2145547<br /><gbrowseImage>
	name=NC_010473:2144093..2145547		name=NC_010473:2144093..2145547
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>