ada:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:41:16Z

touch

← Older revision		Revision as of 20:41, 19 September 2013
Line 128:		Line 128:
	\|		\|
	W3110: 2313739..2312675<br /><gbrowseImage>		W3110: 2313739..2312675<br /><gbrowseImage>
	name=~~AC_000091~~:2312675..2313739		name=NC_007779:2312675..2313739
	source=W3110		source=W3110
	preset=GeneLocation		preset=GeneLocation
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	\|		\|
	{{GBrowseLink\|W3110\|~~AC_000091~~\|2311675\|2314739\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|NC_007779\|2311675\|2314739\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|W3110\|~~AC_000091~~\|2312675\|2313739\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|NC_007779\|2312675\|2313739\|FASTA Dump}}
	\|-		\|-
	\|		\|
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	\|-		\|-
	\|		\|
	~~[http://www.ncbi.nlm.nih.gov/gene NCBI] (~~[[~~NCBI\|EcoliWiki Page~~]])		[[RegulonDB]]
	\|		\|
	~~[http~~:~~//www.ncbi.nlm.nih.gov/gene?term=946710 GeneID:946710]~~		RegulonDB:ECK120000026
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	[[~~RegulonDB~~]]		[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI\|EcoliWiki Page]])
	\|		\|
	~~RegulonDB~~:~~ECK120000026~~		[http://www.ncbi.nlm.nih.gov/gene?term=946710 GeneID:946710]
	\|		\|
	''Escherichia coli'' str. K-12 substr. ~~[[:Category:Strain:~~MG1655~~\|MG1655]]~~		Escherichia coli str. K-12 substr. MG1655
	\|-		\|-
	\|		\|

127.0.0.1: touch

2013-05-27T07:23:33Z

touch

← Older revision		Revision as of 07:23, 27 May 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="D46a9d8adeebbb" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D46a9d8adeebbb" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| id="G46a9d8aea4c50" class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46a9d8aea4c50" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| ~~{{Prettytable}}~~ id="Z46a9d8aee9980" class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a9d8aee9980" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="A4e04b6eb6c5ef" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A4e04b6eb6c5ef" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="G46a9d8afa08f8" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46a9d8afa08f8" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="R46a9d8b04209c" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R46a9d8b04209c" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-		\|-
	\|		\|
	~~[http://ecocyc.org EcoCyc] (~~[[EcoCyc~~\|EcoliWiki Page~~]])		[[EcoCyc]]
	\|		\|
	~~[http~~:~~//biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=~~EG10029 ~~ECOCYC:EG10029]~~		EcoCyc:EG10029
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
	~~[http://ecogene.org EcoGene] (~~[[EcoGene~~\|EcoliWiki Page~~]])		[[EcoGene]]
	\|		\|
	~~[http://ecogene.org/geneinfo.php?eg_id=EG10029~~ EcoGene:EG10029]		EcoGene:EG10029
	\|		\|
	Escherichia coli str. K-12 substr. MG1655		''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
	\|-		\|-
	\|		\|
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	\|		\|
	Escherichia coli str. K-12 substr. MG1655		Escherichia coli str. K-12 substr. MG1655
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:ECK120000026
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:EB0028
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:ABE-0007311
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="L46a6f5de8bc32" class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a6f5de8bc32" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

Joncrz: Table edited by Joncrz via TableEdit

2012-02-16T19:09:34Z

Table edited by Joncrz via TableEdit

← Older revision		Revision as of 19:09, 16 February 2012
Line 433:		Line 433:
	\|-		\|-
	\|		\|
	''~~Δ~~ada-766::kan''		''ada-766(del)::kan''
	\|		\|

imported>Wikientrybot: Refreshing information from GenBank record NC_000913

2011-09-24T14:00:46Z

Refreshing information from GenBank record NC_000913

@@ Line 46: / Line 46: @@
 !align=left {{table_heading_style}} |Synonyms
 ||
-''ECK2205, b2213, JW2201''<ref name='LIB:Riley_2006'/>
+''ECK2205, b2213, JW2201''<ref name='LIB:Riley_2006'/>, JW2201''
 |- class="tableEdit_footer"
@@ Line 558: / Line 558: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:24:26Z

Bulk deleting accessions.

@@ Line 507: / Line 507: @@
 Primer 2:CCtCTCTCCTCATTTTCAGCTTC
 |-
+|
@@ Line 527: / Line 536: @@
 est. P1 cotransduction: 65% <ref name='LIB:Nichols_linked_Tn'/> <br />
 Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR.  This is a NalS derivative constructed by S. McAteer (CGSC).
 |- class="tableEdit_footer"
@@ Line 558: / Line 558: @@
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |- class="tableEdit_footer"

127.0.0.1: Data loaded by TableEdit_Loader.

2011-09-02T20:58:18Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 20:58, 2 September 2011
Line 527:		Line 527:
	est. P1 cotransduction: 65% <ref name='LIB:Nichols_linked_Tn'/> <br />		est. P1 cotransduction: 65% <ref name='LIB:Nichols_linked_Tn'/> <br />
	Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).		Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).
			\|-
			\|
			[[:Category:Kohara_Phage:22A6\|22A6]]
			\|
			Kohara Phage
			\|
			[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=373 Genobase]
			\|
			PMID:3038334

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:39:25Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:39, 17 August 2011
Line 84:		Line 84:
	\|		\|
	*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10029 EcoCyc]		*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10029 EcoCyc]
	{{GBrowseLink\|~~ecoli~~\|NC_000913\|2306363\|2309427\|GBrowse(MG1655)}}		{{GBrowseLink\|MG1655\|NC_000913\|2306363\|2309427\|GBrowse(MG1655)}}

	\|		\|
	{{GBrowseFastaLink\|~~ecoli~~\|NC_000913\|2307363\|2308427\|FASTA Dump}}		{{GBrowseFastaLink\|MG1655\|NC_000913\|2307363\|2308427\|FASTA Dump}}
	*[http://biocyc.org/ECOLI/sequence?object=EG10029 EcoCyc Sequence Dump]		*[http://biocyc.org/ECOLI/sequence?object=EG10029 EcoCyc Sequence Dump]
	\|-		\|-
Line 118:		Line 118:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|2193168\|~~NC_2194232~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|2193168\|2194232\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|2193168\|~~NC_2194232~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|2193168\|2194232\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 134:		Line 134:

	\|		\|
	{{GBrowseLink\|~~ecoli_W3110~~\|AC_000091\|2311675\|2314739\|GBrowse(W3110)}}		{{GBrowseLink\|W3110\|AC_000091\|2311675\|2314739\|GBrowse(W3110)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_W3110~~\|AC_000091\|2312675\|2313739\|FASTA Dump}}		{{GBrowseFastaLink\|W3110\|AC_000091\|2312675\|2313739\|FASTA Dump}}
	\|-		\|-
	\|		\|
Line 150:		Line 150:

	\|		\|
	{{GBrowseLink\|~~ecoli_DH10B~~\|NC_010473\|2396223\|2401543\|GBrowse(DH10B)}}		{{GBrowseLink\|DH10B\|NC_010473\|2396223\|2401543\|GBrowse(DH10B)}}
	\|		\|
	{{GBrowseFastaLink\|~~ecoli_DH10B~~\|NC_010473\|2396223\|2401543\|FASTA Dump}}		{{GBrowseFastaLink\|DH10B\|NC_010473\|2396223\|2401543\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Edited by wikibot

2011-06-27T17:14:27Z

Edited by wikibot

← Older revision		Revision as of 17:14, 27 June 2011
Line 129:		Line 129:
	W3110: 2313739..2312675<br /><gbrowseImage>		W3110: 2313739..2312675<br /><gbrowseImage>
	name=AC_000091:2312675..2313739		name=AC_000091:2312675..2313739
	source=~~MG1655_W3110~~		source=W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-26T05:36:30Z

Edited by wikibot

← Older revision		Revision as of 05:36, 26 June 2011
Line 145:		Line 145:
	DH10B: 2399415..2398351<br /><gbrowseImage>		DH10B: 2399415..2398351<br /><gbrowseImage>
	name=NC_010473:2398351..2399415		name=NC_010473:2398351..2399415
	source=~~MG1655_DH10B~~		source=DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

127.0.0.1: Edited by wikibot

2011-06-24T22:28:58Z

Edited by wikibot

← Older revision		Revision as of 22:28, 24 June 2011
Line 78:		Line 78:
	MG1655: 2308427..2307363<br /><gbrowseImage>		MG1655: 2308427..2307363<br /><gbrowseImage>
	name=NC_000913:2307363..2308427		name=NC_000913:2307363..2308427
	source=~~ecoli~~		source=MG1655
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
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	W3110: 2313739..2312675<br /><gbrowseImage>		W3110: 2313739..2312675<br /><gbrowseImage>
	name=AC_000091:2312675..2313739		name=AC_000091:2312675..2313739
	source=~~ecoli_W3110~~		source=MG1655_W3110
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>
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	DH10B: 2399415..2398351<br /><gbrowseImage>		DH10B: 2399415..2398351<br /><gbrowseImage>
	name=NC_010473:2398351..2399415		name=NC_010473:2398351..2399415
	source=~~ecoli_DH10B~~		source=MG1655_DH10B
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>