T4-like genome database - Revision history

JimHu: /* About {{PAGENAME}} */

2011-05-29T23:47:57Z

About {{PAGENAME}}

← Older revision		Revision as of 23:47, 29 May 2011
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	==About {{PAGENAME}}==		==About {{PAGENAME}}==
	[http://phage.bioc.tulane.edu/ {{PAGENAME}}] is a site with genome browsers for the annotated genomes of a set of T4-like bacteriophage sequenced at Tulane and elsewhere.		[http://phage.bioc.tulane.edu/ {{PAGENAME}}] is a site with genome browsers for the annotated genomes of a set of T4-like bacteriophage sequenced at Tulane and elsewhere. The website moved from Tulane to Georgia Gwinnett College.

	==Content==		==Content==

JimHu: Table edited by JimHu via TableEdit

2011-05-29T23:44:47Z

Table edited by JimHu via TableEdit

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	!align=left {{table heading style}} \|Link/URL:		!align=left {{table heading style}} \|Link/URL:
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	http://phage.~~bioc.tulane~~.edu		http://phage.ggc.edu/
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	!align=left {{table heading style}} \|What:		!align=left {{table heading style}} \|What:
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	Jim Nolan		Jim Nolan
	~~Tulane Univ.~~		Georgia Gwinnett College
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	!align=left {{table heading style}} \|Updates:		!align=left {{table heading style}} \|Updates:

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-05-23T00:12:07Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

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	!align=left \|Link/URL:		!align=left {{table heading style}} \|Link/URL:
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	http://phage.bioc.tulane.edu		http://phage.bioc.tulane.edu
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	!align=left \|What:		!align=left {{table heading style}} \|What:
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	Genome information about T4-like bacteriophage		Genome information about T4-like bacteriophage
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	!align=left \|Who:		!align=left {{table heading style}} \|Who:
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	Jim Nolan		Jim Nolan
	Tulane Univ.		Tulane Univ.
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	!align=left \|Updates:		!align=left {{table heading style}} \|Updates:
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	!align=left \|Web Services:		!align=left {{table heading style}} \|Web Services:
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127.0.0.1: Update TableEdit tables.

2010-01-10T00:51:16Z

Update TableEdit tables.

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	!align=left ~~{{table heading style}}~~ \|Link/URL:		!align=left \|Link/URL:
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	http://phage.bioc.tulane.edu		http://phage.bioc.tulane.edu
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	!align=left ~~{{table heading style}}~~ \|What:		!align=left \|What:
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	Genome information about T4-like bacteriophage		Genome information about T4-like bacteriophage
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	!align=left ~~{{table heading style}}~~ \|Who:		!align=left \|Who:
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	Jim Nolan		Jim Nolan
	Tulane Univ.		Tulane Univ.
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	!align=left ~~{{table heading style}}~~ \|Updates:		!align=left \|Updates:
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127.0.0.1: Fixing references section.

2009-06-26T17:40:37Z

Fixing references section.

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	==References==		==References==
	{{RefHelp}}<references/>		{{BacktoTop}}
			{{RefHelp}}
			<references />

	==External Links==		==External Links==
	[http://phage.bioc.tulane.edu/ {{PAGENAME}}] URL: http://phage.bioc.tulane.edu		[http://phage.bioc.tulane.edu/ {{PAGENAME}}] URL: http://phage.bioc.tulane.edu
	===Discussion of {{PAGENAME}} on other websites===		===Discussion of {{PAGENAME}} on other websites===

JimHu: /* Technology */

2009-06-02T13:20:29Z

Technology

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	==Other sites with related content==		==Other sites with related content==
	==Technology==		==Technology==
	[[GBrowse]] plus analysis packages used to generate ~~annoation~~ tracks.		[[GBrowse]] plus analysis packages used to generate annotation tracks.

	===Web Services/API===		===Web Services/API===

JimHu at 13:20, 2 June 2009

2009-06-02T13:20:12Z

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 [[Category:Databases]]
 [[Category:Bacteriophage Databases]]
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JimHu: Table edited by JimHu via TableEdit

2009-06-02T13:19:46Z

Table edited by JimHu via TableEdit

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	!align=left {{table heading style}} \|Link/URL:		!align=left {{table heading style}} \|Link/URL:
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			http://phage.bioc.tulane.edu
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	!align=left {{table heading style}} \|What:		!align=left {{table heading style}} \|What:
			\|\|
			Genome information about T4-like bacteriophage
	\|-		\|-
	!align=left {{table heading style}} \|Who:		!align=left {{table heading style}} \|Who:
			\|\|
			Jim Nolan
			Tulane Univ.
	\|-		\|-
	!align=left {{table heading style}} \|Updates:		!align=left {{table heading style}} \|Updates:
			\|\|

	\|-		\|-
	!align=left {{table heading style}} \|Upcoming events:		!align=left {{table heading style}} \|Upcoming events:
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	\|-		\|-
	!align=left {{table heading style}} \|Web Services:		!align=left {{table heading style}} \|Web Services:
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JimHu at 13:18, 2 June 2009

2009-06-02T13:18:38Z

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			==About {{PAGENAME}}==
	[http://phage.bioc.tulane.edu/ {{PAGENAME}}] is a site with genome browsers for the annotated genomes of a set of T4-like bacteriophage sequenced at Tulane and elsewhere.		[http://phage.bioc.tulane.edu/ {{PAGENAME}}] is a site with genome browsers for the annotated genomes of a set of T4-like bacteriophage sequenced at Tulane and elsewhere.

	=Content=		==Content==
	Genome data and [http://www.gmod.org/wiki/index.php/Gbrowse GBrowse]-based browsers for T4 family members Bacteriophage RB14, RB32, Acinetobacter phage 133, Aeromonas phage 25, Aeromonas phage 65, Vibrio phage nt-1, bacteriophage phi-1, RB16, RB43, Phage 31, 44RR2.8t, Aeh1, RB49, RB69, T4, P-SSM2, P-SSM4, S-PM2, KVP40. There is also a local BLAST for T4-like phage genomes and a forum for discussion of phage biology and genomics.		Genome data and [http://www.gmod.org/wiki/index.php/Gbrowse GBrowse]-based browsers for T4 family members Bacteriophage RB14, RB32, Acinetobacter phage 133, Aeromonas phage 25, Aeromonas phage 65, Vibrio phage nt-1, bacteriophage phi-1, RB16, RB43, Phage 31, 44RR2.8t, Aeh1, RB49, RB69, T4, P-SSM2, P-SSM4, S-PM2, KVP40. There is also a local BLAST for T4-like phage genomes and a forum for discussion of phage biology and genomics.

	=Using {{PAGENAME}}=		==Using {{PAGENAME}}==
	==Browsing==		===Browsing===
	The home page lists each of the phage genomes covered and links to their GBrowse pages, a more classic but noninteractive graphical map, FASTA files for proteins, RNAs, and genomes, and links to the NCBI browser and [[Genbank]] pages. Clicking on a gene in the browser brings up a summary page that has much more than the standard GBrowse data page. The data for each gene includes the DNA and protein sequences, statistics about the protein, a popup alignment viewer, and a White-Wimley hydropathy plot.		The home page lists each of the phage genomes covered and links to their GBrowse pages, a more classic but noninteractive graphical map, FASTA files for proteins, RNAs, and genomes, and links to the NCBI browser and [[Genbank]] pages. Clicking on a gene in the browser brings up a summary page that has much more than the standard GBrowse data page. The data for each gene includes the DNA and protein sequences, statistics about the protein, a popup alignment viewer, and a White-Wimley hydropathy plot.

	Tracks in the browser include BLAST hits to the other covered genomes. Clicking on these takes you to the browser for the other phage.		Tracks in the browser include BLAST hits to the other covered genomes. Clicking on these takes you to the browser for the other phage.
	==Searching==		===Searching===
	Searching is via the GBrowse search box		Searching is via the GBrowse search box
	==Usage examples==		===Usage examples===

	=Other sites with related content=		==Other sites with related content==
	=Technology=		==Technology==
	[[GBrowse]] plus analysis packages used to generate annoation tracks.		[[GBrowse]] plus analysis packages used to generate annoation tracks.

	==Web Services/API==		===Web Services/API===
	GBrowse includes a Moby interface. Not documented whether it works on this site.		GBrowse includes a Moby interface. Not documented whether it works on this site.

	=Discussion=		==Discussion==


	=References=		==References==
	=External Links=		{{RefHelp}}<references/>
			==External Links==
	[http://phage.bioc.tulane.edu/ {{PAGENAME}}] URL: http://phage.bioc.tulane.edu		[http://phage.bioc.tulane.edu/ {{PAGENAME}}] URL: http://phage.bioc.tulane.edu
	==Discussion of {{PAGENAME}} on other websites==		===Discussion of {{PAGENAME}} on other websites===

Siegele: /* Content */

2007-08-04T21:44:53Z

Content

← Older revision		Revision as of 21:44, 4 August 2007
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	=Content=		=Content=
	Genome data and [[GBrowse]]-based browsers for T4 family members Bacteriophage RB14, RB32, Acinetobacter phage 133, Aeromonas phage 25, Aeromonas phage 65, Vibrio phage nt-1, bacteriophage phi-1, RB16, RB43, Phage 31, 44RR2.8t, Aeh1, RB49, RB69, T4, P-SSM2, P-SSM4, S-PM2, KVP40. There is also a local BLAST for T4-like phage genomes and a forum for discussion of phage biology and genomics.		Genome data and [http://www.gmod.org/wiki/index.php/Gbrowse GBrowse]-based browsers for T4 family members Bacteriophage RB14, RB32, Acinetobacter phage 133, Aeromonas phage 25, Aeromonas phage 65, Vibrio phage nt-1, bacteriophage phi-1, RB16, RB43, Phage 31, 44RR2.8t, Aeh1, RB49, RB69, T4, P-SSM2, P-SSM4, S-PM2, KVP40. There is also a local BLAST for T4-like phage genomes and a forum for discussion of phage biology and genomics.

	=Using {{PAGENAME}}=		=Using {{PAGENAME}}=