Sequenced E. coli Genomes - Revision history

Bmcintosh at 22:09, 27 July 2010

2010-07-27T22:09:45Z

← Older revision		Revision as of 22:09, 27 July 2010
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	[[:Category:E._coli_genomes\|go to the ''E. coli'' Gene Lists in EcoliWiki]]		[[:Category:E._coli_genomes\|Go to the ''E. coli'' Gene Lists in EcoliWiki]]

	EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains. Although pathogenic strains of ''E. coli'' are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.		EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains. Although pathogenic strains of ''E. coli'' are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.

Bmcintosh at 22:09, 27 July 2010

2010-07-27T22:09:26Z

← Older revision		Revision as of 22:09, 27 July 2010
Line 1:		Line 1:
			[[:Category:E._coli_genomes\|go to the ''E. coli'' Gene Lists in EcoliWiki]]
	EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains. Although pathogenic strains of ''E. coli'' are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.		EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains. Although pathogenic strains of ''E. coli'' are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.

Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-27T22:07:38Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 22:07, 27 July 2010
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344610&lvl=3&lin=f&keep=1&srchmode=1&unlock 344610]
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	Enteropathogenic.		Enteropathogenic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344601&lvl=3&lin=f&keep=1&srchmode=1&unlock 344601]
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	Enterotoxigenic.		Enterotoxigenic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340184&lvl=3&lin=f&keep=1&srchmode=1&unlock 340184]
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	Atypical enteropathogenic.		Atypical enteropathogenic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340186&lvl=3&lin=f&keep=1&srchmode=1&unlock 340186]
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	[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>		[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>
	\|		\|
			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=475609&lvl=3&lin=f&keep=1&srchmode=1&unlock 475609]
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	Pathogenic.		Pathogenic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585395&lvl=3&lin=f&keep=1&srchmode=1&unlock 585395]
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	Pathogenic.		Pathogenic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585396&lvl=3&lin=f&keep=1&srchmode=1&unlock 585396]
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=701177&lvl=3&lin=f&keep=1&srchmode=1&unlock 701177]
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	enteropathogenic strain, serovar = O26:H11		enteropathogenic strain, serovar = O26:H11
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=573235&lvl=3&lin=f&keep=1&srchmode=1&unlock 573235]
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	Extraintestinal Pathogenic		Extraintestinal Pathogenic
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=714962&lvl=3&lin=f&keep=1&srchmode=1&unlock 714962]
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	Commensal strain.		Commensal strain.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=431946&lvl=3&lin=f&keep=1&srchmode=1&unlock 431946]

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Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-27T22:00:40Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 22:00, 27 July 2010
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	Enteropathogenic.		Enteropathogenic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340185&lvl=3&lin=f&keep=1&srchmode=1&unlock 340185]
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	Enterohemorrhagic.		Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478004&lvl=3&lin=f&keep=1&srchmode=1&unlock 478004]
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	Enterohemorrhagic.		Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478005&lvl=3&lin=f&keep=1&srchmode=1&unlock 478005]
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	Enterohemorrhagic.		Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478006&lvl=3&lin=f&keep=1&srchmode=1&unlock 478006]
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	Enterohemorrhagic.		Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478007&lvl=3&lin=f&keep=1&srchmode=1&unlock 478007]
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	Enterohemorrhagic.		Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=544404&lvl=3&lin=f&keep=1&srchmode=1&unlock 544404]
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	Enterohemorrhagic.		Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478008&lvl=3&lin=f&keep=1&srchmode=1&unlock 478008]
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	Bovine isolate; does not express Shiga toxin.		Bovine isolate; does not express Shiga toxin.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=570506&lvl=3&lin=f&keep=1&srchmode=1&unlock 570506]
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	Enterohemorrhagic.		Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=502346&lvl=3&lin=f&keep=1&srchmode=1&unlock 502346]
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	Enterohemorrhagic bovine isolate.		Enterohemorrhagic bovine isolate.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=410290&lvl=3&lin=f&keep=1&srchmode=1&unlock 410290]
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	Enteroaggregative.		Enteroaggregative.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=216592&lvl=3&lin=f&keep=1&srchmode=1&unlock 216592]
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	''E. coli'' K1; Neonatal meningitis ''E. coli'' (NMEC).		''E. coli'' K1; Neonatal meningitis ''E. coli'' (NMEC).
	\|		\|
			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=439184&lvl=3&lin=f&keep=1&srchmode=1&unlock 439184]
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=488477&lvl=3&lin=f&keep=1&srchmode=1&unlock 488477]
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	''E. coli'' LW1655F+		''E. coli'' K-12 LW1655F+
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	in progress		in progress
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	[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29609 Entrez Genome Project]<br/>		[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29609 Entrez Genome Project]<br/>
	\|		\|
			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=527799&lvl=3&lin=f&keep=1&srchmode=1&unlock 527799]
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	[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=409438 409438]		[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=409438 409438]
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	~~''E. coli'' 078:H11 H10407~~
	\|
	~~complete~~
	\|

	\|
	no
	\|
	~~[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>~~
	~~[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute]<br/>~~

	~~Enterohemorrhagic.~~
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	[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=31105 Entrez Genome Project]<br/>		[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=31105 Entrez Genome Project]<br/>
	\|		\|
			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=566546&lvl=3&lin=f&keep=1&srchmode=1&unlock 566546]
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Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-27T20:00:25Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 20:00, 27 July 2010
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444449&lvl=3&lin=f&keep=1&srchmode=1&unlock 444449]
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444448&lvl=3&lin=f&keep=1&srchmode=1&unlock 444448]
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444453&lvl=3&lin=f&keep=1&srchmode=1&unlock 444453]
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444452&lvl=3&lin=f&keep=1&srchmode=1&unlock 444452]
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444451&lvl=3&lin=f&keep=1&srchmode=1&unlock 444451]
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	<br/> Enterohemorrhagic.		<br/> Enterohemorrhagic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444447&lvl=3&lin=f&keep=1&srchmode=1&unlock 444447]
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	Cell wall-less L-form derivative of ''E. coli'' K-12.		Cell wall-less L-form derivative of ''E. coli'' K-12.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=531853&lvl=3&lin=f&keep=1&srchmode=1&unlock 531853]
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Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-27T19:44:44Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 19:44, 27 July 2010
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	Enteroaggregative.		Enteroaggregative.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=358709&lvl=3&lin=f&keep=1&srchmode=1&unlock 358709]
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	Extra-intestinal pathogenic.		Extra-intestinal pathogenic.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340197&lvl=3&lin=f&keep=1&srchmode=1&unlock 340197]
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	Human commensal isolate.		Human commensal isolate.
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			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=331112&lvl=3&lin=f&keep=1&srchmode=1&unlock 331112]
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	Enterohemorrhagic.		Enterohemorrhagic.
	\|		\|
			[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444454&lvl=3&lin=f&keep=1&srchmode=1&unlock 444454]
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Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-27T19:40:39Z

Table edited by Bmcintosh via TableEdit

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Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-27T18:56:24Z

Table edited by Bmcintosh via TableEdit

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Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-23T20:58:42Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 20:58, 23 July 2010
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	''E. coli'' ~~O55:H7 CB9615~~		[[DH1\|''E. coli'' K-12 DH1]]
	\|		\|
	complete		complete
	\|		\|
	[http://www.ncbi.nlm.nih.gov/nuccore/~~NC_013941 NC_013941~~]		[http://www.ncbi.nlm.nih.gov/nuccore/CP001637 CP001637]
	\|		\|
	no		not yet
	\|		\|
			Escherichia coli K12 DH1, ATCC 33849
	\|-		\|-
	\|		\|
	''E. coli'' ~~DH1~~		''E. coli'' O55:H7 CB9615
	\|		\|
	complete		complete
	\|		\|
	[http://www.ncbi.nlm.nih.gov/nuccore/~~CP001637 CP001637~~]		[http://www.ncbi.nlm.nih.gov/nuccore/NC_013941 NC_013941]
	\|		\|
	~~not yet~~		no
	\|		\|
	~~Escherichia coli K12 DH1, ATCC 33849~~
	\|-		\|-
	\|		\|

Bmcintosh: Table edited by Bmcintosh via TableEdit

2010-07-23T20:57:37Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 20:57, 23 July 2010
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			\|-
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			''E. coli'' DH1
			\|
			complete
			\|
			[http://www.ncbi.nlm.nih.gov/nuccore/CP001637 CP001637]
			\|
			not yet
			\|
			Escherichia coli K12 DH1, ATCC 33849
			\|-
			\|
			''E. coli'' O26:H11 str. 11368
			\|
			complete
			\|
			[http://www.ncbi.nlm.nih.gov/nuccore/NC_013361 NC_013361]
			\|
			no
			\|
			enteropathogenic strain, serovar = O26:H11
			\|-
			\|
			''E. coli'' IHE3034
			\|
			complete
			\|
			[http://www.ncbi.nlm.nih.gov/nuccore/CP001969 CP001969]
			\|
			no
			\|
			Extraintestinal Pathogenic
			\|-
			\|
			''E. coli'' SE15
			\|
			complete
			\|
			[http://www.ncbi.nlm.nih.gov/nuccore/AP009378 AP009378]]
			\|
			no
			\|
			Commensal strain.

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