Phage lambda orf-401:Gene Product(s) - Revision history

127.0.0.1: touch table

2015-02-17T20:19:04Z

touch table

← Older revision		Revision as of 20:19, 17 February 2015
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	*		*
	****************************************************************************************** -->{{Product_interactions_help}}		****************************************************************************************** -->{{Product_interactions_help}}
	{\| id="R4a848f84ee3fe" class=" tableEdit Product_interactions_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R4a848f84ee3fe" class=" tableEdit Product_interactions_table dataTable"
	\|- {{table heading style}}		\|- {{table heading style}}
	!\|Partner Type!!Partner!!Notes!!References!!Evidence		!\|Partner Type!!Partner!!Notes!!References!!Evidence
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	*		*
	****************************************************************************************** -->{{Product_localization_help}}		****************************************************************************************** -->{{Product_localization_help}}
	{\| class=" tableEdit Product_localization_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Product_localization_table"
	\|- {{table heading style}}		\|- {{table heading style}}
	!\|Compartment!!Description!!Evidence!!Reference/Source!!Notes		!\|Compartment!!Description!!Evidence!!Reference/Source!!Notes

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..L46a415f168ae7&page=&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..L46a415f168ae7&page=103872&pagename={{FULLPAGENAMEE}}&type=0&template=Product_localization_table edit table]</span> \|\| \|\| \|\| \|\|
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	!align=left {{table heading style}} \|Sequence		!align=left {{table heading style}} \|Sequence
	\|\|		\|\|

	<pre>MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV		<pre>MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV
	ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV		ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV
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	ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT		ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT
	AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR		AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR
	KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H</pre>		KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H</pre>
	\|-		\|-
	!align=left {{table heading style}} \|Length		!align=left {{table heading style}} \|Length
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..T46a415f199114&page=&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..T46a415f199114&page=103872&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> \|\|
	\|}		\|}
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	*		*
	****************************************************************************************** -->{{Product_domains_motifs_help}}		****************************************************************************************** -->{{Product_domains_motifs_help}}
	{\| class=" tableEdit Product_motif_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Product_motif_table dataTable"
	\|- {{table heading style}}		\|- {{table heading style}}
	!\|Type!!Residues!!Description!!Notes!!References		!\|Type!!Residues!!Description!!Notes!!References

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..R46a415f1c99f2&page=&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..R46a415f1c99f2&page=103872&pagename={{FULLPAGENAMEE}}&type=0&template=Product_motif_table edit table]</span> \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..R46a415f1c99f2-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..R46a415f1c99f2-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..U46a415f205f3d&page=&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..U46a415f205f3d&page=103872&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> \|\|
	\|}		\|}
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	*		*
	****************************************************************************************** -->{{Product_resources_help}}		****************************************************************************************** -->{{Product_resources_help}}
	{\| class=" tableEdit Product_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Product_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource type!!Source!!Notes/Reference		!\|Resource type!!Source!!Notes/Reference

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..Y46a415f2364ee&page=&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..Y46a415f2364ee&page=103872&pagename={{FULLPAGENAMEE}}&type=0&template=Product_resource_table edit table]</span> \|\| \|\|
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	<!--box uid=421aa90e079fa326b6494f812ad13e79..Y46a415f2364ee-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..Y46a415f2364ee-->
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..Y46a415f266d99&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..Y46a415f266d99&page=103872&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> \|\| \|\|
	\|}		\|}
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	****************************************************************************************** -->		****************************************************************************************** -->
	{\| class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..N46b16b58a1b4b&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..N46b16b58a1b4b&page=103872&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> \|\| \|\|
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Bmcintosh: /* Notes */

2013-09-03T18:20:40Z

Notes

← Older revision		Revision as of 18:20, 3 September 2013
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	<protect><!--Nomenclature_notes--></protect>		<protect><!--Nomenclature_notes--></protect>
	===Notes===		===Notes===
	Classic "wild-type" phage Lambda is known as λPaPa. However, this particular phage as a frameshift mutation in the stf gene. The frameshift creates 2 orfs: orf-401 and orf-314. Phage Lambda without the frameshift, and thus with the intact stf gene, is referred to as Ur-λ. <ref name='PMID:1439823'/>		Classic "wild-type" phage Lambda is known as λPaPa. However, this particular phage as a frameshift mutation in the stf gene. The frameshift creates 2 orfs: orf-401 and [[Phage_lambda_orf-314:Gene_Product(s)\|orf-314]]. Phage Lambda without the frameshift, and thus with the intact stf gene, is referred to as Ur-λ. <ref name='PMID:1439823'/>

	==Function==		==Function==

Bmcintosh: /* Notes */

2013-09-03T18:20:01Z

Notes

← Older revision		Revision as of 18:20, 3 September 2013
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	<protect><!--Nomenclature_notes--></protect>		<protect><!--Nomenclature_notes--></protect>
	===Notes===		===Notes===
			Classic "wild-type" phage Lambda is known as λPaPa. However, this particular phage as a frameshift mutation in the stf gene. The frameshift creates 2 orfs: orf-401 and orf-314. Phage Lambda without the frameshift, and thus with the intact stf gene, is referred to as Ur-λ. <ref name='PMID:1439823'/>

	==Function==		==Function==

Bmcintosh: Table edited by Bmcintosh via TableEdit

2013-09-03T18:17:21Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 18:17, 3 September 2013
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	!align=left {{table heading style}} \|Standard name		!align=left {{table heading style}} \|Standard name
	\|\|		\|\|
	orf-401		orf-401
	\|-		\|-
	!align=left {{table heading style}} \|Synonyms		!align=left {{table heading style}} \|Synonyms
	\|\|		\|\|
	orf-401, lambdap27		orf-401, lambdap27
	\|-		\|-
	!align=left {{table heading style}} \|Product description		!align=left {{table heading style}} \|Product description
	\|\|		\|\|
	Tail fiber protein		Tail fiber protein, stf <ref name='PMID:1439823'/>
	\|-		\|-
	!align=left {{table heading style}} \|EC number (for enzymes)		!align=left {{table heading style}} \|EC number (for enzymes)
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	\|}		\|}
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Bmcintosh: Table edited by Bmcintosh via TableEdit

2013-09-03T18:15:08Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 18:15, 3 September 2013
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	*		*
	****************************************************************************************** -->{{Product_GO_help}}		****************************************************************************************** -->{{Product_GO_help}}
	{\| class=" tableEdit GO_table_product dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit GO_table_product dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status		!\|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
			\|-
			\|

			\|
			GO:0098024
			\|
			virus tail, fiber
			\|
			PMID:1439823
			\|
			IMP: Inferred from Mutant Phenotype
			\|

			\|
			C
			\|
			Phage lambda wt (LambdaPaPa) vs Ur-Lambda.
			\|
			complete

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imported>Wikientrybot: Bulk deleting accessions.

2011-09-21T19:16:24Z

Bulk deleting accessions.

← Older revision		Revision as of 19:16, 21 September 2011
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	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
	\|-
	\|
	~~[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank\|EcoliWiki Page]])~~
	\|
	~~[http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein&cmd=&term=NP_040602.1 Genbank:NP_040602.1]~~
	\|


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127.0.0.1: /Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_product_tables.php

2011-08-25T00:04:42Z

/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_product_tables.php

← Older revision		Revision as of 00:04, 25 August 2011
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	{\| class=" tableEdit Product_localization_table"		{\| class=" tableEdit Product_localization_table"
	\|- {{table heading style}}		\|- {{table heading style}}
	!\|Compartment!!Description!!Evidence!!Source!!Notes		!\|Compartment!!Description!!Evidence!!Reference/Source!!Notes

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	!align=left {{table heading style}} \|Length		!align=left {{table heading style}} \|Length
	\|\|		\|\|
			401
	\|-		\|-
	!align=left {{table heading style}} \|Mol. Wt		!align=left {{table heading style}} \|Mol. Wt
	\|\|		\|\|
			39.882 kDa
	\|-		\|-
	!align=left {{table heading style}} \|pI		!align=left {{table heading style}} \|pI
	\|\|		\|\|
			5.6 (calculated)
	\|-		\|-
	!align=left {{table heading style}} \|Extinction coefficient		!align=left {{table heading style}} \|Extinction coefficient
	\|\|		\|\|
			11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: Updating product models

2011-08-17T15:56:57Z

Updating product models

← Older revision		Revision as of 15:56, 17 August 2011
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	\|\|		\|\|
	View models at:		View models at:
	* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
	* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
	* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]		* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
	* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
	* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)		* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

127.0.0.1: /Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php

2011-08-15T23:48:14Z

/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php

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	{\| class=" tableEdit GO_table_product dataTable"		{\| class=" tableEdit GO_table_product dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Qualifier!!GO ID!!GO term name!!Reference~~(s)~~!!Evidence Code!!with/from!!Aspect!!Notes!!Status		!\|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	****************************************************************************************** -->{{Product_physical_properties_help}}		****************************************************************************************** -->{{Product_physical_properties_help}}
	{\| class=" tableEdit Product_phys_prop_table"		{\| class=" tableEdit Product_phys_prop_table"

			\|-
			!align=left {{table heading style}} \|Name
			\|\|

	\|-		\|-
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	!align=left {{table heading style}} \|Length		!align=left {{table heading style}} \|Length
	\|\|		\|\|
	~~401~~
	\|-		\|-
	!align=left {{table heading style}} \|Mol. Wt		!align=left {{table heading style}} \|Mol. Wt
	\|\|		\|\|
	~~39.882 kDa~~
	\|-		\|-
	!align=left {{table heading style}} \|pI		!align=left {{table heading style}} \|pI
	\|\|		\|\|
	~~5.6 (calculated)~~
	\|-		\|-
	!align=left {{table heading style}} \|Extinction coefficient		!align=left {{table heading style}} \|Extinction coefficient
	\|\|		\|\|
	~~11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)~~

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-06-17T18:45:06Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

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	*		*
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	{\| class=" tableEdit Product_phys_prop_table"		{\| class=" tableEdit Product_phys_prop_table"

	\|-		\|-
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	*		*
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	{\| class=" tableEdit Product_structure_table"		{\| class=" tableEdit Product_structure_table"

	\|-		\|-