Phage lambda cro:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:58:02Z

touch

← Older revision		Revision as of 20:58, 19 September 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="K4e04b60968902" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K4e04b60968902" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
Line 250:		Line 250:
	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

127.0.0.1: touch the Gene_nomenclature_table table.

2012-08-13T16:06:09Z

touch the Gene_nomenclature_table table.

← Older revision		Revision as of 16:06, 13 August 2012
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	NC_001416		NC_001416
	\|		\|

	\|		\|
	NC_001416: 38023..38315<br />{{GBrowseFigureByCoord\|38023\|38315\|bacteriophage_lambda\|NC_001416}}		NC_001416: 38023..38315<br />{{GBrowseFigureByCoord\|38023\|38315\|bacteriophage_lambda\|NC_001416}}
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..S46b16fc60427e&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..S46b16fc60427e&page=104221&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..S46b16fc60427e-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..S46b16fc60427e-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..U46a3d825cdc21-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..U46a3d825cdc21-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..Z46b16fc7b0fa1&page=&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..Z46b16fc7b0fa1&page=104221&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_allele_table edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\| \|\|
	\|}		\|}
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..R46a3d8263a656-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..R46a3d8263a656-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..L46b16fcbe1831&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..L46b16fcbe1831&page=104221&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..L46b16fcbe1831-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..L46b16fcbe1831-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..U46b16fcc9c229&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..U46b16fcc9c229&page=104221&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..U46b16fcc9c229-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..U46b16fcc9c229-->

Saleksander: Table edited by Saleksander via TableEdit

2011-11-03T22:01:27Z

Table edited by Saleksander via TableEdit

← Older revision		Revision as of 22:01, 3 November 2011
Line 42:		Line 42:
	!align=left {{table_heading_style}} \|Mnemonic		!align=left {{table_heading_style}} \|Mnemonic
	\|\|		\|\|
	''c''ontrol of ''r''epressor and ''o''ther things <ref name='LIB:BofV'/>		'''c'''ontrol of '''r'''epressor and '''o'''ther things <ref name='LIB:BofV'/>
	\|-		\|-
	!align=left {{table_heading_style}} \|Synonyms		!align=left {{table_heading_style}} \|Synonyms

Saleksander: Table edited by Saleksander via TableEdit

2011-11-03T22:00:43Z

Table edited by Saleksander via TableEdit

← Older revision		Revision as of 22:00, 3 November 2011
Line 42:		Line 42:
	!align=left {{table_heading_style}} \|Mnemonic		!align=left {{table_heading_style}} \|Mnemonic
	\|\|		\|\|
			''c''ontrol of ''r''epressor and ''o''ther things <ref name='LIB:BofV'/>
	\|-		\|-
	!align=left {{table_heading_style}} \|Synonyms		!align=left {{table_heading_style}} \|Synonyms
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..B46b16fc51f3b8&page=&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..B46b16fc51f3b8&page=104221&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..B46b16fc51f3b8-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..B46b16fc51f3b8-->

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:48:37Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:48, 17 August 2011
Line 78:		Line 78:
	NC_012759: 4143642..4143842<br />{{GBrowseFigureByCoord\|4143642\|4143842\|BW2952\|NC_012759}}		NC_012759: 4143642..4143842<br />{{GBrowseFigureByCoord\|4143642\|4143842\|BW2952\|NC_012759}}
	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|4143642\|~~NC_4143842~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|4143642\|4143842\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|4143642\|~~NC_4143842~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|4143642\|4143842\|FASTA Dump}}
	\|-		\|-
	\|		\|

127.0.0.1: Adding section & Genetic interactions table to Gene pages.

2011-06-24T16:06:34Z

Adding section & Genetic interactions table to Gene pages.

@@ Line 16: / Line 16: @@
 |{{Sub}}[[#Sequence Features|Sequence Features]]
 |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
 |{{Sub}}[[#Genetic Resources  |Genetic Resources]]
 |{{Sub}}[[#Accessions in Other Databases |Accessions]]
@@ Line 195: / Line 196: @@
 ===Notes===
 ==Genetic Resources==

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-06-17T18:43:22Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 18:43, 17 June 2010
Line 32:		Line 32:
	*		*
	****************************************************************************************** -->{{Gene_nomenclature_help}}		****************************************************************************************** -->{{Gene_nomenclature_help}}
	{\| class=" tableEdit Gene_nomenclature_table"		{\| class=" tableEdit Gene_nomenclature_table"

	\|-		\|-

127.0.0.1: Insert SeqFeature_Table link.

2010-05-10T23:21:43Z

Insert SeqFeature_Table link.

← Older revision		Revision as of 23:21, 10 May 2010
Line 14:		Line 14:
	\|{{Sub}}[[#Nomenclature \|Nomenclature]]		\|{{Sub}}[[#Nomenclature \|Nomenclature]]
	\|{{Sub}}[[#Location(s) and DNA Sequence\|Location(s) and DNA Sequence]]		\|{{Sub}}[[#Location(s) and DNA Sequence\|Location(s) and DNA Sequence]]
			\|{{Sub}}[[#Sequence Features\|Sequence Features]]
	\|{{Sub}}[[#Alleles and Phenotypes \|Alleles and Phenotypes]]		\|{{Sub}}[[#Alleles and Phenotypes \|Alleles and Phenotypes]]
	\|{{Sub}}[[#Genetic Resources \|Genetic Resources]]		\|{{Sub}}[[#Genetic Resources \|Genetic Resources]]

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-05-10T23:00:30Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 23:00, 10 May 2010
Line 34:		Line 34:

	\|-		\|-
	!align=left \|Standard name		!align=left {{table_heading_style}} \|Standard name
	\|\|		\|\|
	''Phage lambda cro''		''Phage lambda cro''
	\|-		\|-
	!align=left \|Mnemonic		!align=left {{table_heading_style}} \|Mnemonic
	\|\|		\|\|

	\|-		\|-
	!align=left \|Synonyms		!align=left {{table_heading_style}} \|Synonyms
	\|\|		\|\|
	''cro, lambdap57''		''cro, lambdap57''
Line 70:		Line 70:
	\|-		\|-
	\|		\|
	~~NC_001416~~		[[BW2952]]
	\|		\|

	\|		\|
	~~NC_001416~~: ~~38023~~..~~38315~~<br />{{GBrowseFigureByCoord\|~~38023~~\|~~38315~~\|~~bacteriophage_lambda~~\|~~NC_001416~~}}		NC_012759: 4143642..4143842<br />{{GBrowseFigureByCoord\|4143642\|4143842\|BW2952\|NC_012759}}
	\|		\|
	{{GBrowseLink\|~~bacteriophage_lambda~~\|~~NC_001416~~\|~~38023~~\|~~38315~~\|~~Gbrowse~~ (~~Bacteriophage lambda~~)}}		{{GBrowseLink\|BW2952\|012759\|4143642\|NC_4143842\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|~~bacteriophage_lambda~~\|~~NC_001416~~\|~~38023~~\|~~38315~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|012759\|4143642\|NC_4143842\|FASTA Dump}}
	\|-		\|-
	\|		\|
	~~[[BW2952]]~~		NC_001416
	\|		\|

	\|		\|
	~~NC_012759~~: ~~4143642~~..~~4143842~~<br />{{GBrowseFigureByCoord\|~~4143642~~\|~~4143842~~\|~~BW2952~~\|~~NC_012759~~}}		NC_001416: 38023..38315<br />{{GBrowseFigureByCoord\|38023\|38315\|bacteriophage_lambda\|NC_001416}}
	\|		\|
	{{GBrowseLink\|~~BW2952~~\|~~012759~~\|~~4143642~~\|~~NC_4143842~~\|~~GBrowse~~ (~~BW2952~~)}}		{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|38023\|38315\|Gbrowse (Bacteriophage lambda)}}
	\|		\|
	{{GBrowseFastaLink\|~~BW2952~~\|~~012759~~\|~~4143642~~\|~~NC_4143842~~\|FASTA Dump}}		{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|38023\|38315\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| class=" tableEdit Gene_sequence_features_table"		{\| class=" tableEdit Gene_sequence_features_table"
	\|-		\|- {{table_heading_style}}
	!\|Feature ~~type~~!!Location!!~~Description~~		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..U46a3d825cdc21&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..U46a3d825cdc21&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> \|\| \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..U46a3d825cdc21-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..U46a3d825cdc21-->
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	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| class=" tableEdit Gene_allele_table"		{\| class=" tableEdit Gene_allele_table dataTable"
	\|-		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
	\|-		\|-
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	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| class=" tableEdit Gene_resource_table"		{\| class=" tableEdit Gene_resource_table"
	\|-		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference

Line 227:		Line 227:
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| class=" tableEdit Gene_accessions_table"		{\| class=" tableEdit Gene_accessions_table"
	\|-		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes

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	****************************************************************************************** -->		****************************************************************************************** -->
	{\| class=" tableEdit Links_table"		{\| class=" tableEdit Links_table"
	\|-		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

127.0.0.1: Data loaded by TableEdit_Loader.

2010-03-05T23:08:49Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 23:08, 5 March 2010
Line 66:		Line 66:
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| class=" tableEdit Gene_location_table"		{\| class=" tableEdit Gene_location_table"
	\|-		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
	\|-		\|-
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	\|		\|
	{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|38023\|38315\|FASTA Dump}}		{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|38023\|38315\|FASTA Dump}}
			\|-
			\|
			[[BW2952]]
			\|

			\|
			NC_012759: 4143642..4143842<br />{{GBrowseFigureByCoord\|4143642\|4143842\|BW2952\|NC_012759}}
			\|
			{{GBrowseLink\|BW2952\|012759\|4143642\|NC_4143842\|GBrowse (BW2952)}}
			\|
			{{GBrowseFastaLink\|BW2952\|012759\|4143642\|NC_4143842\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"