Phage lambda cI:Gene - Revision history

127.0.0.1: touch

2013-09-19T20:36:20Z

touch

← Older revision		Revision as of 20:36, 19 September 2013
Line 67:		Line 67:
	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| class=" tableEdit Gene_sequence_features_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_sequence_features_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
Line 141:		Line 141:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| class=" tableEdit Gene_allele_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_allele_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 334:		Line 334:
	*		*
	****************************************************************************************** -->{{Genetic_interaction_help}}		****************************************************************************************** -->{{Genetic_interaction_help}}
	{\| id="Z4e04b606e2e01" class=" tableEdit Genetic_interaction_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z4e04b606e2e01" class=" tableEdit Genetic_interaction_table dataTable"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes		!\|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
Line 355:		Line 355:
	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
Line 377:		Line 377:
	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
Line 399:		Line 399:
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| class=" tableEdit Links_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" class=" tableEdit Links_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

127.0.0.1: touch the Gene_nomenclature_table table.

2012-08-13T16:06:06Z

touch the Gene_nomenclature_table table.

← Older revision		Revision as of 16:06, 13 August 2012
Line 81:		Line 81:
	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

	\|		\|
	{{GBrowseLink\|BW2952\|NC_012759\|4142828\|4143541\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|4142828\|4143541\|GBrowse (BW2952)}}
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	NC_001416		NC_001416
	\|		\|

	\|		\|
	NC_001416: 37940..37227<br /><gbrowseImage>		NC_001416: 37940..37227<br /><gbrowseImage>
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	preset=GeneLocation		preset=GeneLocation
	</gbrowseImage>		</gbrowseImage>

	\|		\|
	{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|Gbrowse (Bacteriophage lambda)}}		{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|Gbrowse (Bacteriophage lambda)}}
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..V46b16f5859a83&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..V46b16f5859a83&page=104185&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..V46b16f5859a83-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..V46b16f5859a83-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> \|\| \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930&page=104185&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> \|\| \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..N46a3ee759b6a6&page=&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..N46a3ee759b6a6&page=104185&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_allele_table edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..N46a3ee759b6a6-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..N46a3ee759b6a6-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..B46a3d81f83799&page=&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table]</span> \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..B46a3d81f83799&page=104185&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..B46a3d81f83799-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..B46a3d81f83799-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..J46b16f6e02330&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..J46b16f6e02330&page=104185&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..J46b16f6e02330-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..J46b16f6e02330-->
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	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..B46b16f6eb59de&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..B46b16f6eb59de&page=104185&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..B46b16f6eb59de-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..B46b16f6eb59de-->

127.0.0.1: Fixing Gbrowse links (bug #119)

2011-08-17T19:48:36Z

Fixing Gbrowse links (bug #119)

← Older revision		Revision as of 19:48, 17 August 2011
Line 83:		Line 83:

	\|		\|
	{{GBrowseLink\|BW2952\|~~012759~~\|4142828\|~~NC_4143541~~\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|NC_012759\|4142828\|4143541\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|BW2952\|~~012759~~\|4142828\|~~NC_4143541~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|NC_012759\|4142828\|4143541\|FASTA Dump}}
	\|-		\|-
	\|		\|

127.0.0.1: Adding section & Genetic interactions table to Gene pages.

2011-06-24T16:06:31Z

Adding section & Genetic interactions table to Gene pages.

@@ Line 16: / Line 16: @@
 |{{Sub}}[[#Sequence Features|Sequence Features]]
 |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
 |{{Sub}}[[#Genetic Resources  |Genetic Resources]]
 |{{Sub}}[[#Accessions in Other Databases |Accessions]]
@@ Line 324: / Line 325: @@
 ===Notes===
 ==Genetic Resources==

JimHu: /* Notes */

2010-08-06T18:48:37Z

Notes

← Older revision		Revision as of 18:48, 6 August 2010
Line 54:		Line 54:
	<!--Nomenclature_notes--></protect>		<!--Nomenclature_notes--></protect>
	===Notes===		===Notes===
			cI is c for clear plaque and Roman numeral I for one of three complementation groups that give clear plaques.

	==Location(s) and DNA Sequence==		==Location(s) and DNA Sequence==

127.0.0.1: Convert to gbrowse_img.php extension.

2010-07-26T20:06:02Z

Convert to gbrowse_img.php extension.

← Older revision		Revision as of 20:06, 26 July 2010
Line 75:		Line 75:

	\|		\|
	NC_012759: 4142828..4143541<br />~~{{GBrowseFigureByCoord\|~~4142828\|4143541\|BW2952~~\|NC_012759}}~~		NC_012759: 4142828..4143541<br /><gbrowseImage>
			name=NC_012759:4142828..4143541
			source=BW2952
			preset=GeneLocation
			</gbrowseImage>

	\|		\|
	{{GBrowseLink\|BW2952\|012759\|4142828\|NC_4143541\|GBrowse (BW2952)}}		{{GBrowseLink\|BW2952\|012759\|4142828\|NC_4143541\|GBrowse (BW2952)}}
Line 86:		Line 91:

	\|		\|
	NC_001416: 37940..37227<br />~~{{GBrowseFigureByCoord\|~~37227\|37940\|bacteriophage_lambda~~\|NC_001416}}~~		NC_001416: 37940..37227<br /><gbrowseImage>
			name=NC_001416:37227..37940
			source=bacteriophage_lambda
			preset=GeneLocation
			</gbrowseImage>

	\|		\|
	{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|Gbrowse (Bacteriophage lambda)}}		{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|Gbrowse (Bacteriophage lambda)}}

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-06-17T18:43:14Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 18:43, 17 June 2010
Line 32:		Line 32:
	*		*
	****************************************************************************************** -->{{Gene_nomenclature_help}}		****************************************************************************************** -->{{Gene_nomenclature_help}}
	{\| class=" tableEdit Gene_nomenclature_table"		{\| class=" tableEdit Gene_nomenclature_table"

	\|-		\|-

127.0.0.1: Insert SeqFeature_Table link.

2010-05-10T23:21:41Z

Insert SeqFeature_Table link.

← Older revision		Revision as of 23:21, 10 May 2010
Line 14:		Line 14:
	\|{{Sub}}[[#Nomenclature \|Nomenclature]]		\|{{Sub}}[[#Nomenclature \|Nomenclature]]
	\|{{Sub}}[[#Location(s) and DNA Sequence\|Location(s) and DNA Sequence]]		\|{{Sub}}[[#Location(s) and DNA Sequence\|Location(s) and DNA Sequence]]
			\|{{Sub}}[[#Sequence Features\|Sequence Features]]
	\|{{Sub}}[[#Alleles and Phenotypes \|Alleles and Phenotypes]]		\|{{Sub}}[[#Alleles and Phenotypes \|Alleles and Phenotypes]]
	\|{{Sub}}[[#Genetic Resources \|Genetic Resources]]		\|{{Sub}}[[#Genetic Resources \|Genetic Resources]]

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-05-10T23:00:28Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 23:00, 10 May 2010
Line 34:		Line 34:

	\|-		\|-
	!align=left \|Standard name		!align=left {{table_heading_style}} \|Standard name
	\|\|		\|\|
	''Phage lambda cI''		''Phage lambda cI''
	\|-		\|-
	!align=left \|Mnemonic		!align=left {{table_heading_style}} \|Mnemonic
	\|\|		\|\|

	\|-		\|-
	!align=left \|Synonyms		!align=left {{table_heading_style}} \|Synonyms
	\|\|		\|\|
	''cI, lambdap88''		''cI, lambdap88''
Line 70:		Line 70:
	\|-		\|-
	\|		\|
	~~NC_001416~~		[[BW2952]]
	\|		\|

	\|		\|
	~~NC_001416~~: ~~37940~~..~~37227~~<br />{{GBrowseFigureByCoord\|~~37227~~\|~~37940~~\|~~bacteriophage_lambda~~\|~~NC_001416~~}}		NC_012759: 4142828..4143541<br />{{GBrowseFigureByCoord\|4142828\|4143541\|BW2952\|NC_012759}}
	\|		\|
	{{GBrowseLink\|~~bacteriophage_lambda~~\|~~NC_001416~~\|~~37940~~\|~~37227~~\|~~Gbrowse~~ (~~Bacteriophage lambda~~)}}		{{GBrowseLink\|BW2952\|012759\|4142828\|NC_4143541\|GBrowse (BW2952)}}
	\|		\|
	{{GBrowseFastaLink\|~~bacteriophage_lambda~~\|~~NC_001416~~\|~~37940~~\|~~37227~~\|FASTA Dump}}		{{GBrowseFastaLink\|BW2952\|012759\|4142828\|NC_4143541\|FASTA Dump}}
	\|-		\|-
	\|		\|
	~~[[BW2952]]~~		NC_001416
	\|		\|

	\|		\|
	~~NC_012759~~: ~~4142828~~..~~4143541~~<br />{{GBrowseFigureByCoord\|~~4142828~~\|~~4143541~~\|~~BW2952~~\|~~NC_012759~~}}		NC_001416: 37940..37227<br />{{GBrowseFigureByCoord\|37227\|37940\|bacteriophage_lambda\|NC_001416}}
	\|		\|
	{{GBrowseLink\|~~BW2952~~\|~~012759~~\|~~4142828~~\|~~NC_4143541~~\|~~GBrowse~~ (~~BW2952~~)}}		{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|Gbrowse (Bacteriophage lambda)}}
	\|		\|
	{{GBrowseFastaLink\|~~BW2952~~\|~~012759~~\|~~4142828~~\|~~NC_4143541~~\|FASTA Dump}}		{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
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	****************************************************************************************** -->{{Gene_sequence_features_help}}		****************************************************************************************** -->{{Gene_sequence_features_help}}
	{\| class=" tableEdit Gene_sequence_features_table"		{\| class=" tableEdit Gene_sequence_features_table"
	\|-		\|- {{table_heading_style}}
	!\|Feature ~~type~~!!Location!!~~Description~~		!\|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"
	\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930&page=&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> \|\| \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930-->		<!--box uid=421aa90e079fa326b6494f812ad13e79..T46a3d81f21930-->
Line 131:		Line 131:
	*		*
	****************************************************************************************** -->{{Gene_alleles_help}}		****************************************************************************************** -->{{Gene_alleles_help}}
	{\| class=" tableEdit Gene_allele_table"		{\| class=" tableEdit Gene_allele_table dataTable"
	\|-		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
	\|-		\|-
Line 324:		Line 324:
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| class=" tableEdit Gene_resource_table"		{\| class=" tableEdit Gene_resource_table"
	\|-		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference

Line 346:		Line 346:
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| class=" tableEdit Gene_accessions_table"		{\| class=" tableEdit Gene_accessions_table"
	\|-		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes

Line 368:		Line 368:
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| class=" tableEdit Links_table"		{\| class=" tableEdit Links_table"
	\|-		\|- {{table_heading_style}}
	!\|Name!!URL!!Comments		!\|Name!!URL!!Comments

127.0.0.1: Data loaded by TableEdit_Loader.

2010-03-05T23:08:48Z

Data loaded by TableEdit_Loader.

← Older revision		Revision as of 23:08, 5 March 2010
Line 66:		Line 66:
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| class=" tableEdit Gene_location_table"		{\| class=" tableEdit Gene_location_table"
	\|-		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
	\|-		\|-
Line 79:		Line 79:
	\|		\|
	{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|FASTA Dump}}		{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|37940\|37227\|FASTA Dump}}
			\|-
			\|
			[[BW2952]]
			\|

			\|
			NC_012759: 4142828..4143541<br />{{GBrowseFigureByCoord\|4142828\|4143541\|BW2952\|NC_012759}}
			\|
			{{GBrowseLink\|BW2952\|012759\|4142828\|NC_4143541\|GBrowse (BW2952)}}
			\|
			{{GBrowseFastaLink\|BW2952\|012759\|4142828\|NC_4143541\|FASTA Dump}}

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"