PMID:19920124 - Revision history

imported>Wikientrybot: change PMID template to TableEdit version

2013-09-15T04:35:58Z

change PMID template to TableEdit version

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	'''~~No author listed~~''' (2010) The Pfam protein families database. ''Nucleic Acids Res.'' '''38''':D211-22		'''Finn, RD, Mistry, J, Tate, J, Coggill, P, Heger, A, Pollington, JE, Gavin, OL, Gunasekaran, P, Ceric, G, Forslund, K, Holm, L, Sonnhammer, EL, Eddy, SR and Bateman, A''' (2010) The Pfam protein families database. ''Nucleic Acids Res.'' '''38''':D211-22
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	!align=left \|Abstract		!align=left \|Abstract

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2013-09-01T19:07:54Z

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 ==EcoliWiki Links {{HelpIcon|Help:Literature}} ==

imported>Wikientrybot: change PMID template to TableEdit version

2013-09-01T19:07:54Z

change PMID template to TableEdit version

← Older revision		Revision as of 19:07, 1 September 2013
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	<~~protect~~>		<!--box uid=d41d8cd98f00b204e9800998ecf8427e.172175.A5223908a2de1b-->
	<~~span style = 'font~~-~~size: large'> '''Finn, RD, Mistry, J, Tate, J, Coggill, P, Heger, A, Pollington, JE, Gavin, OL, Gunasekaran, P, Ceric, G, Forslund, K, Holm, L, Sonnhammer, EL, Eddy, SR and Bateman, A''~~' ~~(2010) The Pfam protein families database~~.~~''Nucleic Acids Res.'' '''38''':D211~~-~~22</span~~>		<!--
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	\|~~{{TableHeadingColor}}~~ \|'''~~Abstract~~''' ~~\|\| <protect>Pfam is a widely used database of protein families and domains. This article describes a set of major updates that we have implemented in the latest release~~ (~~version 24.0~~). The most important change is that we now use HMMER3, the latest version of the popular profile hidden Markov model package. This software is approximately 100 times faster than HMMER2 and is more sensitive due to the routine use of the forward algorithm. The move to HMMER3 has necessitated numerous changes to Pfam ~~that are described in detail. Pfam release 24.0 contains 11,912~~ families~~, of which a large number have been significantly updated during the past two years~~. ~~Pfam is available via servers in the UK (http://pfam~~.~~sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http~~:~~//pfam.sbc.su.se/).</protect>~~		!align=left \|Citation
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			'''No author listed''' (2010) The Pfam protein families database. ''Nucleic Acids Res.'' '''38''':D211-22
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	\|~~{{TableHeadingColor}} nowrap~~ \|~~'''~~Links~~'''~~ \|\|		!align=left \|Abstract
	* [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19920124 PubMed]		\|\|
			Pfam is a widely used database of protein families and domains. This article describes a set of major updates that we have implemented in the latest release (version 24.0). The most important change is that we now use HMMER3, the latest version of the popular profile hidden Markov model package. This software is approximately 100 times faster than HMMER2 and is more sensitive due to the routine use of the forward algorithm. The move to HMMER3 has necessitated numerous changes to Pfam that are described in detail. Pfam release 24.0 contains 11,912 families, of which a large number have been significantly updated during the past two years. Pfam is available via servers in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/).
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			[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19920124 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808889 PMC2808889]
	Online version:[http://dx.doi.org/10.1093/nar/gkp985 10.1093/nar/gkp985]		Online version:[http://dx.doi.org/10.1093/nar/gkp985 10.1093/nar/gkp985]
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			!align=left \|Keywords
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			Amino Acid Sequence; Animals; Computational Biology/methods; Computational Biology/trends; Databases, Nucleic Acid; Databases, Protein; Genome, Archaeal; Genome, Fungal; Humans; Information Storage and Retrieval/methods; Internet; Molecular Sequence Data; Protein Structure, Tertiary; Sequence Alignment; Sequence Homology, Amino Acid; Software

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			\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.172175.A5223908a2de1b&page=172175&pagename={{FULLPAGENAMEE}}&type=1&template=PMID_info_table edit table]</span> \|\|
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	<~~/protect~~>		<!--box uid=d41d8cd98f00b204e9800998ecf8427e.172175.A5223908a2de1b-->
	==Significance {{HelpIcon\|Help:Literature}} ==		==Significance {{HelpIcon\|Help:Literature}} ==
	{{LitSignificance}}		{{LitSignificance}}

Bmcintosh: Fill PMID: Page!

2010-06-28T18:49:50Z

Fill PMID: Page!

← Older revision	Revision as of 18:49, 28 June 2010
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		<span style = 'font-size: large'> '''Finn, RD, Mistry, J, Tate, J, Coggill, P, Heger, A, Pollington, JE, Gavin, OL, Gunasekaran, P, Ceric, G, Forslund, K, Holm, L, Sonnhammer, EL, Eddy, SR and Bateman, A''' (2010) The Pfam protein families database.''Nucleic Acids Res.'' '''38''':D211-22</span>

		{\|{{Prettytable}} align = 'center' width= '70%'
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		\|{{TableHeadingColor}} \|'''Abstract''' \|\| <protect>Pfam is a widely used database of protein families and domains. This article describes a set of major updates that we have implemented in the latest release (version 24.0). The most important change is that we now use HMMER3, the latest version of the popular profile hidden Markov model package. This software is approximately 100 times faster than HMMER2 and is more sensitive due to the routine use of the forward algorithm. The move to HMMER3 has necessitated numerous changes to Pfam that are described in detail. Pfam release 24.0 contains 11,912 families, of which a large number have been significantly updated during the past two years. Pfam is available via servers in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/).</protect>
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		* [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19920124 PubMed]
		Online version:[http://dx.doi.org/10.1093/nar/gkp985 10.1093/nar/gkp985]
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		==Significance {{HelpIcon\|Help:Literature}} ==
		{{LitSignificance}}

		== Useful Materials and Methods {{HelpIcon\|Help:Literature}}==
		{{LitMaterials}}

		==Annotations {{HelpIcon\|Help:Literature}}==
		<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.172175.W4c28eecea4629-->
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		{\| id="W4c28eecea4629" class=" tableEdit GO_table_reference"
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		!\|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

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		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172175.W4c28eecea4629&page=172175&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_reference edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\| \|\| \|\|
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		<!--box uid=63ce1649aab8b3180235b0af7618f667.172175.W4c28eecea4629--></protect>

		==EcoliWiki Links {{HelpIcon\|Help:Literature}} ==
		{{LitLinks}}

		==See also==

		==References==
		{{RefHelp}}
		<references/>

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