PMID:12824371 - Revision history

imported>Wikientrybot: change PMID template to TableEdit version

2013-09-15T04:20:32Z

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	'''~~No author listed~~''' (2003) YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation. ''Nucleic Acids Res.'' '''31''':3586-8		'''Sinha, S and Tompa, M''' (2003) YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation. ''Nucleic Acids Res.'' '''31''':3586-8
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2013-09-01T18:22:04Z

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imported>Wikientrybot: change PMID template to TableEdit version

2013-09-01T18:22:04Z

change PMID template to TableEdit version

← Older revision		Revision as of 18:22, 1 September 2013
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	<~~protect~~>		<!--box uid=d41d8cd98f00b204e9800998ecf8427e.171749.G522385cc9e905-->
	<~~span style = 'font~~-~~size: large'> '''Sinha, S and Tompa, M''~~' ~~(2003) YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation~~.~~''Nucleic Acids Res.'' '''31''':3586~~-~~8</span~~>		<!--
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	\|~~{{TableHeadingColor}}~~ \|'''~~Abstract~~''' ~~\|\| <protect>~~A ~~fundamental challenge facing biologists is to identify DNA binding sites~~ for ~~unknown regulatory factors, given a collection~~ of ~~genes believed to be coregulated. The program YMF identifies good candidates for such~~ binding sites by ~~searching for statistically overrepresented motifs~~. ~~More specifically, YMF enumerates all motifs in the search space and is guaranteed to produce those motifs with greatest z-scores~~. ~~This note describes the YMF web software, available at http~~:~~//bio.cs.washington.edu/software.html.</protect>~~		!align=left \|Citation
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			'''No author listed''' (2003) YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation. ''Nucleic Acids Res.'' '''31''':3586-8
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	\|~~{{TableHeadingColor}} nowrap~~ \|~~'''~~Links~~'''~~ \|\| [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12824371 PubMed]<br/>		!align=left \|Abstract
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			A fundamental challenge facing biologists is to identify DNA binding sites for unknown regulatory factors, given a collection of genes believed to be coregulated. The program YMF identifies good candidates for such binding sites by searching for statistically overrepresented motifs. More specifically, YMF enumerates all motifs in the search space and is guaranteed to produce those motifs with greatest z-scores. This note describes the YMF web software, available at http://bio.cs.washington.edu/software.html.
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			[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12824371 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC169024 PMC169024]

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			!align=left \|Keywords
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			Algorithms; Binding Sites; Data Interpretation, Statistical; Internet; Mycobacterium tuberculosis/genetics; Promoter Regions, Genetic; Regulatory Sequences, Nucleic Acid; Saccharomyces cerevisiae/genetics; Sequence Analysis, DNA/methods; Software; Transcription Factors/metabolism; User-Computer Interface

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	==Significance {{HelpIcon\|Help:Literature}} ==		==Significance {{HelpIcon\|Help:Literature}} ==
	{{LitSignificance}}		{{LitSignificance}}

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2010-04-13T19:08:34Z

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← Older revision	Revision as of 19:08, 13 April 2010
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		<span style = 'font-size: large'> '''Sinha, S and Tompa, M''' (2003) YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation.''Nucleic Acids Res.'' '''31''':3586-8</span>

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		\|{{TableHeadingColor}} \|'''Abstract''' \|\| <protect>A fundamental challenge facing biologists is to identify DNA binding sites for unknown regulatory factors, given a collection of genes believed to be coregulated. The program YMF identifies good candidates for such binding sites by searching for statistically overrepresented motifs. More specifically, YMF enumerates all motifs in the search space and is guaranteed to produce those motifs with greatest z-scores. This note describes the YMF web software, available at http://bio.cs.washington.edu/software.html.</protect>
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		\|{{TableHeadingColor}} nowrap \|'''Links''' \|\| [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12824371 PubMed]<br/>
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		==Significance {{HelpIcon\|Help:Literature}} ==
		{{LitSignificance}}

		== Useful Materials and Methods {{HelpIcon\|Help:Literature}}==
		{{LitMaterials}}

		==Annotations {{HelpIcon\|Help:Literature}}==
		<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.171749.A4bc4c132409ab-->
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		!\|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

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		==EcoliWiki Links {{HelpIcon\|Help:Literature}} ==
		{{LitLinks}}

		==See also==

		==References==
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		<references/>

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2010-04-13T19:08:34Z

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