Gene Expression Omnibus (GEO) - Revision history

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-05-23T00:11:43Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

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	!align=left \|Link/URL:		!align=left {{table heading style}} \|Link/URL:
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	[http://www.ncbi.nlm.nih.gov/geo/ GEO]		[http://www.ncbi.nlm.nih.gov/geo/ GEO]
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	!align=left \|What:		!align=left {{table heading style}} \|What:
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	NCBI archive of expression data		NCBI archive of expression data
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	!align=left \|Who:		!align=left {{table heading style}} \|Who:
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	Ron Edgar		Ron Edgar
	NCBI		NCBI
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	!align=left \|Updates:		!align=left {{table heading style}} \|Updates:
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	!align=left \|Upcoming events:		!align=left {{table heading style}} \|Upcoming events:
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	!align=left \|Web Services:		!align=left {{table heading style}} \|Web Services:
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	[http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_paccess.html Via NCBI EUtils]		[http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_paccess.html Via NCBI EUtils]

127.0.0.1: Update TableEdit tables.

2010-01-09T01:19:26Z

Update TableEdit tables.

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	!align=left ~~{{table heading style}}~~ \|Link/URL:		!align=left \|Link/URL:
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	[http://www.ncbi.nlm.nih.gov/geo/ GEO]		[http://www.ncbi.nlm.nih.gov/geo/ GEO]
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	!align=left ~~{{table heading style}}~~ \|What:		!align=left \|What:
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	NCBI archive of expression data		NCBI archive of expression data
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	!align=left ~~{{table heading style}}~~ \|Who:		!align=left \|Who:
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	Ron Edgar		Ron Edgar
	NCBI		NCBI
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Updates:		!align=left \|Updates:
	\|\|		\|\|

	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Upcoming events:		!align=left \|Upcoming events:
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	!align=left ~~{{table heading style}}~~ \|Web Services:		!align=left \|Web Services:
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	[http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_paccess.html Via NCBI EUtils]		[http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_paccess.html Via NCBI EUtils]

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JimHu: /* Content */

2009-12-28T20:35:40Z

Content

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	==Content==		==Content==
	Content in GEO has data describes as		Content in GEO has data describes as
	* Datasets
	* Platforms		* Platforms
	* Series		* Series
	* Samples		* Samples
			* Datasets
	* Profiles: GEO profiles are expression patterns for specific genes over a dataset.		* Profiles: GEO profiles are expression patterns for specific genes over a dataset.


	~~=== Datasets ===~~


	=== Platforms ===		=== Platforms ===
	A platform describes the physical setup of the assay. For example a platform might describe a specific product, such as the Affymetrix GeneChip E.coli Genome 2.0 Array. GEO platform accessions start with GPL		A platform describes the physical setup of the assay. For example a platform might describe a specific product, such as the Affymetrix GeneChip E.coli Genome 2.0 Array. GEO platform accessions start with GPL

			=== Samples ===
			Samples are the individual array measurements. Sample accessions begin with GSM.

	=== Series ===		=== Series ===
	Series are sets of samples. GEO Series accessions begin with GSE		Series are sets of samples. GEO Series accessions begin with GSE. Series are submitted by users.

	=== ~~Samples~~ ===		=== Datasets ===
	Samples ~~are~~ the ~~individual~~ array measurements. ~~Sample accessions begin with GSM~~		Datasets are curated by GEO curators at NCBI.
			<blockquote>A DataSet represents a curated collection of biologically and statistically comparable GEO Samples and forms the basis of GEO's suite of data display and analysis tools. Samples within a DataSet refer to the same Platform, that is, they share a common set of array elements. Value measurements for each Sample within a DataSet are assumed to be calculated in an equivalent manner, that is, considerations such as background processing and normalization are consistent across the DataSet. Information reflecting experimental factors is provided through DataSet subsets.</blockquote>
			Note that not all series are in datasets due to curation backlogs.

	==Using {{PAGENAME}}==		==Using {{PAGENAME}}==

JimHu: /* External Links */

2009-12-28T20:31:38Z

External Links

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	==External Links==		==External Links==
	[http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO		* [http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO
			* [http://www.ncbi.nlm.nih.gov/geo/info/faq.html GEO FAQ]

	==Discussion of {{PAGENAME}} on other websites==		==Discussion of {{PAGENAME}} on other websites==

JimHu: /* Content */

2009-12-28T20:31:09Z

Content

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 * Samples
 * Profiles: GEO profiles are expression patterns for specific genes over a dataset.
 ==Using {{PAGENAME}}==

JimHu: /* References */

2009-07-01T16:28:18Z

References

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	{{BacktoTop}}		{{BacktoTop}}
	{{RefHelp}}		{{RefHelp}}
	<references/>		<references />

	==External Links==		==External Links==
	[http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO		[http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO
	==Discussion of {{PAGENAME}} on other websites==		==Discussion of {{PAGENAME}} on other websites==

JimHu: /* References */

2009-07-01T16:27:45Z

References

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	==External Links==		==External Links==
	[http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO		[http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO
	==Discussion of {{PAGENAME}} on other websites==		==Discussion of {{PAGENAME}} on other websites==

127.0.0.1: Fixing references section.

2009-06-26T16:41:28Z

Fixing references section.

← Older revision		Revision as of 16:41, 26 June 2009
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	==References==		==References==
			{{BacktoTop}}
	{{RefHelp}}		{{RefHelp}}
	<references/>		<references />

	==External Links==		==External Links==
	[http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO		[http://www.ncbi.nlm.nih.gov/geo/ GEO] URL http://www.ncbi.nlm.nih.gov/geo/ GEO
	==Discussion of {{PAGENAME}} on other websites==		==Discussion of {{PAGENAME}} on other websites==

Amandasupak: Table edited by Amandasupak via TableEdit

2009-06-16T19:32:38Z

Table edited by Amandasupak via TableEdit

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	Ron Edgar		Ron Edgar
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imported>Wikientrybot: Fix links due to TableEditLinks.php changes.

2009-02-19T18:48:38Z

Fix links due to TableEditLinks.php changes.

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	!{{table heading style}} \|Link/URL:		!align=left {{table heading style}} \|Link/URL:
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	[http://www.ncbi.nlm.nih.gov/geo/ GEO]		[http://www.ncbi.nlm.nih.gov/geo/ GEO]
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	!{{table heading style}} \|What:		!align=left {{table heading style}} \|What:
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	NCBI archive of expression data		NCBI archive of expression data
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	!{{table heading style}} \|Who:		!align=left {{table heading style}} \|Who:
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	Ron Edgar		Ron Edgar
	NCBI		NCBI
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	!{{table heading style}} \|Updates:		!align=left {{table heading style}} \|Updates:
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	\|-		\|-
	!{{table heading style}} \|Upcoming events:		!align=left {{table heading style}} \|Upcoming events:
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	!{{table heading style}} \|Web Services:		!align=left {{table heading style}} \|Web Services:
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	[http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_paccess.html Via NCBI EUtils]		[http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_paccess.html Via NCBI EUtils]
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