EcoliWiki:Wishlist - Revision history

Siegele: /* Done */

2010-04-09T02:07:46Z

Done

← Older revision		Revision as of 02:07, 9 April 2010
Line 55:		Line 55:
	*Find based on three letter gene name prefix		*Find based on three letter gene name prefix
	*List of [[Essential genes]]		*List of [[Essential genes]]
	*CGSC Strain list - ~~we don't have plans to enter all the strains, but~~ we now have all the mutant alleles from CGSC in the allele tables, along with links to CGSC.		*CGSC Strain list - we now have all the mutant alleles from CGSC in the allele tables, along with links to CGSC.
	*References- Automatic DOI's for ''all'' PMID articles. DOI's are available from PubMed/MEDLINE and hopefully can be automatically imported when the article abstract is imported. Prepending "<nowiki>http://dx.doi.org/</nowiki>" to a DOI gives a URL that takes the user directly to the journal's version of the online article. See, e.g, the Links section of the table on the [[PMID:17244358]] page.		*References- Automatic DOI's for ''all'' PMID articles. DOI's are available from PubMed/MEDLINE and hopefully can be automatically imported when the article abstract is imported. Prepending "<nowiki>http://dx.doi.org/</nowiki>" to a DOI gives a URL that takes the user directly to the journal's version of the online article. See, e.g, the Links section of the table on the [[PMID:17244358]] page.
	** DOI links will be created on all new PMID pages.		** DOI links will be created on all new PMID pages.
	*Video clip upload		*Video clip upload
	** Not exactly upload, but you can upload to YouTube or Google Video and embed the videos here.		** Not exactly upload, but you can upload to YouTube or Google Video and embed the videos here.

JimHu: /* More filamentous phages */

2009-08-07T14:14:02Z

More filamentous phages

← Older revision		Revision as of 14:14, 7 August 2009
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	==Wishlist==		==Wishlist==

			The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].

	===More filamentous phages===		===More filamentous phages===
	* M13 is up, f1, all those!		* M13 is up, f1, all those!

	The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].

	===how to annotate/easier annotation===		===how to annotate/easier annotation===

Bmcintosh at 02:26, 7 August 2009

2009-08-07T02:26:26Z

← Older revision		Revision as of 02:26, 7 August 2009
Line 1:		Line 1:
	==Wishlist==		==Wishlist==

			===More filamentous phages===
			* M13 is up, f1, all those!

	The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].		The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].

DanielRenfro at 15:55, 15 April 2009

2009-04-15T15:55:49Z

@@ Line 9: / Line 9: @@
 * why do we need two saves for table edit (update and save) isn't one enough?
 [[User:Gribskov|Gribskov]] 16:32, 13 November 2008 (UTC)
 ===Subunit Composition===

Gribskov: /* how to annotate */

2008-11-13T16:35:55Z

how to annotate

← Older revision		Revision as of 16:35, 13 November 2008
Line 2:		Line 2:
	The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].		The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].

	===how to annotate===		===how to annotate/easier annotation===
	*what do you annotate, quickview, gene, gene product?		*what do you annotate, quickview, gene, gene product?
	*does information ever flow from gene or gene-product to quickview (it doesn't look like it)		*does information ever flow from gene or gene-product to quickview (it doesn't look like it)
	*need a much better way to pick categories, both GO and keyword. it looks pretty haphazard now and new overlapping categories seem to be arising		*need a much better way to pick categories, both GO and keyword. it looks pretty haphazard now and new overlapping categories seem to be arising
			* can the damn boxes be wider?
			* why do we need two saves for table edit (update and save) isn't one enough?
	[[User:Gribskov\|Gribskov]] 16:32, 13 November 2008 (UTC)		[[User:Gribskov\|Gribskov]] 16:32, 13 November 2008 (UTC)

	===Subunit Composition===		===Subunit Composition===
	* Component term could be more descriptive with addition of subunit compositions (ie homomultimer/heteromultimer)		* Component term could be more descriptive with addition of subunit compositions (ie homomultimer/heteromultimer)

Gribskov: /* Subunit Composition */

2008-11-13T16:32:26Z

Subunit Composition

← Older revision		Revision as of 16:32, 13 November 2008
Line 2:		Line 2:
	The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].		The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].

			===how to annotate===
			*what do you annotate, quickview, gene, gene product?
			*does information ever flow from gene or gene-product to quickview (it doesn't look like it)
			*need a much better way to pick categories, both GO and keyword. it looks pretty haphazard now and new overlapping categories seem to be arising
			[[User:Gribskov\|Gribskov]] 16:32, 13 November 2008 (UTC)
	===Subunit Composition===		===Subunit Composition===
	* Component term could be more descriptive with addition of subunit compositions (ie homomultimer/heteromultimer)		* Component term could be more descriptive with addition of subunit compositions (ie homomultimer/heteromultimer)

Gwen: /* What we would like to see? */

2008-10-31T14:22:10Z

What we would like to see?

← Older revision		Revision as of 14:22, 31 October 2008
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	*Make TMHMM available to users on this site		*Make TMHMM available to users on this site
	*Promoter prediction tools		*Promoter prediction tools
			*A tool to map genes and/or proteins from a large data set onto pathways.

	== Done ==		== Done ==

JimHu at 15:16, 27 October 2008

2008-10-27T15:16:45Z

← Older revision		Revision as of 15:16, 27 October 2008
Line 10:		Line 10:

	===What we would like to see?===		===What we would like to see?===
	*Find based on three letter gene name prefix
	*Search and type greek and non-English characters or some toolbar for it (lambda vs. the symbol, delta, sigma, etc.)		*Search and type greek and non-English characters or some toolbar for it (lambda vs. the symbol, delta, sigma, etc.)
	*Search for phenotype and output is a list of genes		*Search for phenotype and output is a list of genes
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	*Have the "edit toolbar" visible when editing tables		*Have the "edit toolbar" visible when editing tables
	*Info on or list of compounds that can be taken up by coli e.g. cAMP?		*Info on or list of compounds that can be taken up by coli e.g. cAMP?
	*Make TMHMM predictions and put that information on the gene products page
	*Make TMHMM available to users on this site		*Make TMHMM available to users on this site
	*Promoter prediction tools		*Promoter prediction tools

	== Done ==		== Done ==
			*Make TMHMM predictions and put that information on the gene products page
			*Find based on three letter gene name prefix
	*List of [[Essential genes]]		*List of [[Essential genes]]
	*CGSC Strain list - we don't have plans to enter all the strains, but we now have all the mutant alleles from CGSC in the allele tables, along with links to CGSC.		*CGSC Strain list - we don't have plans to enter all the strains, but we now have all the mutant alleles from CGSC in the allele tables, along with links to CGSC.

Bmcintosh at 16:08, 29 September 2008

2008-09-29T16:08:36Z

← Older revision		Revision as of 16:08, 29 September 2008
Line 2:		Line 2:
	The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].		The EcoliWiki team strives to make the Wiki better. To that end, we are asking for your opinion. If there is a feature not currently available in EcoliWiki that you would like to see, describe it here. Extended discussion of different requested features can go on the [[EcoliWiki_talk:Wishlist\|discussion page]].

			===Subunit Composition===
			* Component term could be more descriptive with addition of subunit compositions (ie homomultimer/heteromultimer)

	===What's up and coming for EcoliWiki v2===		===What's up and coming for EcoliWiki v2===

JimHu: /* What we would like to see? */

2008-09-18T19:43:28Z

What we would like to see?

← Older revision		Revision as of 19:43, 18 September 2008
Line 8:		Line 8:

	===What we would like to see?===		===What we would like to see?===
			*Find based on three letter gene name prefix
	*Search and type greek and non-English characters or some toolbar for it (lambda vs. the symbol, delta, sigma, etc.)		*Search and type greek and non-English characters or some toolbar for it (lambda vs. the symbol, delta, sigma, etc.)
	*Search for phenotype and output is a list of genes		*Search for phenotype and output is a list of genes