Cis Element:Phage lambda cos - Revision history

127.0.0.1: touch

2013-05-27T08:40:52Z

touch

← Older revision		Revision as of 08:40, 27 May 2013
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	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="Q4a3fffdcc01f1" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q4a3fffdcc01f1" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Product_interactions_help}}		****************************************************************************************** -->{{Product_interactions_help}}
	{\| id="Y4a3fffdcc1390" class=" tableEdit Product_interactions_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y4a3fffdcc1390" class=" tableEdit Product_interactions_table dataTable"
	\|- {{table heading style}}		\|- {{table heading style}}
	!\|Partner Type!!Partner!!Notes!!References!!Evidence		!\|Partner Type!!Partner!!Notes!!References!!Evidence
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="G4a3fffdcc23f1" class=" tableEdit Cis_Element_allele_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G4a3fffdcc23f1" class=" tableEdit Cis_Element_allele_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="V4a3fffdcc3512" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V4a3fffdcc3512" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="D4a3fffdcc44e2" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D4a3fffdcc44e2" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
			\|-
			\|
			[[EcoCyc]]
			\|
			EcoCyc:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EcoGene]]
			\|
			EcoGene:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

JimHu: /* Notes */

2012-06-17T20:15:08Z

Notes

← Older revision		Revision as of 20:15, 17 June 2012
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	===Notes===		===Notes===
			Ber et al. 1984. <ref name='PMID:6238175'/> identified an IHF site required for packaging.

	== Genetic Resources ==		== Genetic Resources ==

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-06-17T16:35:51Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 16:35, 17 June 2010
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="A4a3fffdcbe655" class=" tableEdit Cis_element_summary_table"		{\| id="A4a3fffdcbe655" class=" tableEdit Cis_element_summary_table"

	\|-		\|-
	!align=left \|Standard Name		!align=left {{table_heading_style}} \|Standard Name
	\|\|		\|\|
	''lambda cos''		''lambda cos''
	\|-		\|-
	!align=left \|Synonyms		!align=left {{table_heading_style}} \|Synonyms
	\|\|		\|\|
	cohesive end site		cohesive end site
	\|-		\|-
	!align=left \|Function		!align=left {{table_heading_style}} \|Function
	\|\|		\|\|
	Recognition and cleavage site for Lambda terminase		Recognition and cleavage site for Lambda terminase
	\|-		\|-
	!align=left \|Location		!align=left {{table_heading_style}} \|Location
	\|\|		\|\|
	''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695, PMID:666898)		''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695, PMID:666898)
Line 29:		Line 29:
	''cos'' junction is located at nt 1-12		''cos'' junction is located at nt 1-12
	\|-		\|-
	!align=left \|SO terms		!align=left {{table_heading_style}} \|SO terms
	\|\|		\|\|

Line 49:		Line 49:
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="Q4a3fffdcc01f1" class=" tableEdit Gene_location_table"		{\| id="Q4a3fffdcc01f1" class=" tableEdit Gene_location_table"
	\|-		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
	\|-		\|-
Line 79:		Line 79:
	*		*
	****************************************************************************************** -->{{Product_interactions_help}}		****************************************************************************************** -->{{Product_interactions_help}}
	{\| id="Y4a3fffdcc1390" class=" tableEdit Product_interactions_table"		{\| id="Y4a3fffdcc1390" class=" tableEdit Product_interactions_table dataTable"
	\|-		\|- {{table heading style}}
	!\|Partner Type!!Partner!!Notes!!References!!Evidence		!\|Partner Type!!Partner!!Notes!!References!!Evidence

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	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="G4a3fffdcc23f1" class=" tableEdit Cis_Element_allele_table"		{\| id="G4a3fffdcc23f1" class=" tableEdit Cis_Element_allele_table"
	\|-		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments

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	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="V4a3fffdcc3512" class=" tableEdit Gene_resource_table"		{\| id="V4a3fffdcc3512" class=" tableEdit Gene_resource_table"
	\|-		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference

Line 139:		Line 139:
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="D4a3fffdcc44e2" class=" tableEdit Gene_accessions_table"		{\| id="D4a3fffdcc44e2" class=" tableEdit Gene_accessions_table"
	\|-		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes

127.0.0.1: Update TableEdit tables.

2010-01-09T00:21:30Z

Update TableEdit tables.

← Older revision		Revision as of 00:21, 9 January 2010
Line 8:		Line 8:
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|~~border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="A4a3fffdcbe655" class=" tableEdit Cis_element_summary_table"

	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Standard Name		!align=left \|Standard Name
	\|\|		\|\|
	''lambda cos''		''lambda cos''
	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Synonyms		!align=left \|Synonyms
	\|\|		\|\|
	cohesive end site		cohesive end site
	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Function		!align=left \|Function
	\|\|		\|\|
	Recognition and cleavage site for Lambda terminase		Recognition and cleavage site for Lambda terminase
	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Location		!align=left \|Location
	\|\|		\|\|
	''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695, PMID:666898)		''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695, PMID:666898)
Line 29:		Line 29:
	''cos'' junction is located at nt 1-12		''cos'' junction is located at nt 1-12
	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|SO terms		!align=left \|SO terms
	\|\|		\|\|


	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.A4a3fffdcbe655&page=164827&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table] \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.A4a3fffdcbe655&page=164827&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table]</span> \|\|
	\|}		\|}
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	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="Q4a3fffdcc01f1" class=" tableEdit Gene_location_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
	\|-		\|-
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	{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|1\|132\|FASTA Dump}}		{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|1\|132\|FASTA Dump}}

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.Q4a3fffdcc01f1&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.Q4a3fffdcc01f1&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> \|\| \|\| \|\| \|\|
	\|}		\|}
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	*		*
	****************************************************************************************** -->{{Product_interactions_help}}		****************************************************************************************** -->{{Product_interactions_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="Y4a3fffdcc1390" class=" tableEdit Product_interactions_table"
	\|- ~~{{table heading style}}~~		\|-
	!\|Partner Type!!Partner!!Notes!!References!!Evidence		!\|Partner Type!!Partner!!Notes!!References!!Evidence

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.Y4a3fffdcc1390&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table] \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.Y4a3fffdcc1390&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> \|\| \|\| \|\| \|\|
	\|}		\|}
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="G4a3fffdcc23f1" class=" tableEdit Cis_Element_allele_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.G4a3fffdcc23f1&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table] \|\| \|\| \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.G4a3fffdcc23f1&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\|
	\|}		\|}
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="V4a3fffdcc3512" class=" tableEdit Gene_resource_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.V4a3fffdcc3512&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table] \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164827.V4a3fffdcc3512&page=164827&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> \|\| \|\| \|\|
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="D4a3fffdcc44e2" class=" tableEdit Gene_accessions_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes

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127.0.0.1: Fixing references section.

2009-06-26T16:04:10Z

Fixing references section.

← Older revision		Revision as of 16:04, 26 June 2009
Line 152:		Line 152:
	{{BacktoTop}}		{{BacktoTop}}
	{{RefHelp}}		{{RefHelp}}
	<references/>		<references />

	===Categories===		===Categories===
	[[Category:Phage lambda:Cis_Element]]		[[Category:Phage lambda:Cis_Element]]

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-23T20:08:47Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 20:08, 23 June 2009
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	!align=left {{table_heading_style}} \|Location		!align=left {{table_heading_style}} \|Location
	\|\|		\|\|
	''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695)		''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695, PMID:666898)

	''cos'' junction is located at nt 1-12		''cos'' junction is located at nt 1-12

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-23T20:07:58Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 20:07, 23 June 2009
Line 25:		Line 25:
	!align=left {{table_heading_style}} \|Location		!align=left {{table_heading_style}} \|Location
	\|\|		\|\|
	''cos'' site includes roughly nt 48462-48502 through nt 1 - 132		''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695)

	''cos'' junction is located at nt 1-12		''cos'' junction is located at nt 1-12

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-23T19:58:56Z

Table edited by Bmcintosh via TableEdit

@@ Line 51: / Line 51: @@
 |- {{table_heading_style}}
 !|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
 |-class='sortbottom'

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-23T19:43:41Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 19:43, 23 June 2009
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	!align=left {{table_heading_style}} \|Synonyms		!align=left {{table_heading_style}} \|Synonyms
	\|\|		\|\|
			cohesive end site
	\|-		\|-
	!align=left {{table_heading_style}} \|Function		!align=left {{table_heading_style}} \|Function
	\|\|		\|\|
	~~recognition~~ site for ~~endonuclease~~		Recognition and cleavage site for Lambda terminase
	\|-		\|-
	!align=left {{table_heading_style}} \|Location		!align=left {{table_heading_style}} \|Location
	\|\|		\|\|
			''cos'' site includes roughly nt 48462-48502 through nt 1 - 132

			''cos'' junction is located at nt 1-12
	\|-		\|-
	!align=left {{table_heading_style}} \|SO terms		!align=left {{table_heading_style}} \|SO terms

Bmcintosh: /* References */

2009-06-22T22:26:43Z

References

← Older revision		Revision as of 22:26, 22 June 2009
Line 141:		Line 141:
	<references/>		<references/>

	===Categories===[[Category:Phage lambda:Cis_Element]]		===Categories===
			[[Category:Phage lambda:Cis_Element]]