Cis Element:Phage lambda attP - Revision history

127.0.0.1: touch

2013-05-27T08:40:52Z

touch

← Older revision		Revision as of 08:40, 27 May 2013
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	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="V4a413aba1592f" class=" tableEdit Gene_location_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V4a413aba1592f" class=" tableEdit Gene_location_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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	*		*
	****************************************************************************************** -->{{Product_interactions_help}}		****************************************************************************************** -->{{Product_interactions_help}}
	{\| id="T4a413aba1f82d" class=" tableEdit Product_interactions_table dataTable"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="T4a413aba1f82d" class=" tableEdit Product_interactions_table dataTable"
	\|- {{table heading style}}		\|- {{table heading style}}
	!\|Partner Type!!Partner!!Notes!!References!!Evidence		!\|Partner Type!!Partner!!Notes!!References!!Evidence
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="D4a413aba21605" class=" tableEdit Cis_Element_allele_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D4a413aba21605" class=" tableEdit Cis_Element_allele_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="M4a413aba22b6f" class=" tableEdit Gene_resource_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M4a413aba22b6f" class=" tableEdit Gene_resource_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="N4a413aba24414" class=" tableEdit Gene_accessions_table"		{\| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N4a413aba24414" class=" tableEdit Gene_accessions_table"
	\|- {{table_heading_style}}		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes
			\|-
			\|
			[[EcoCyc]]
			\|
			EcoCyc:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EcoGene]]
			\|
			EcoGene:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[RegulonDB]]
			\|
			RegulonDB:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[EchoBASE]]
			\|
			EchoBASE:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]
			\|-
			\|
			[[ASAP]]
			\|
			ASAP:
			\|
			''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655\|MG1655]]

	\|- class="tableEdit_footer"		\|- class="tableEdit_footer"

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-06-17T16:35:49Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 16:35, 17 June 2010
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="U4a413ab9aedf9" class=" tableEdit Cis_element_summary_table"		{\| id="U4a413ab9aedf9" class=" tableEdit Cis_element_summary_table"

	\|-		\|-
	!align=left \|Standard Name		!align=left {{table_heading_style}} \|Standard Name
	\|\|		\|\|
	''lambda attP''		''lambda attP''
	\|-		\|-
	!align=left \|Synonyms		!align=left {{table_heading_style}} \|Synonyms
	\|\|		\|\|

	\|-		\|-
	!align=left \|Function		!align=left {{table_heading_style}} \|Function
	\|\|		\|\|
	phage attachment site		phage attachment site
	\|-		\|-
	!align=left \|Location		!align=left {{table_heading_style}} \|Location
	\|\|		\|\|
	approximately nt 27 571 - 27 813 (PMID:6246439)		approximately nt 27 571 - 27 813 (PMID:6246439)
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	''attP'' core sequence located at nt 27 721 - 27 735 (PMID:6246439)		''attP'' core sequence located at nt 27 721 - 27 735 (PMID:6246439)
	\|-		\|-
	!align=left \|SO terms		!align=left {{table_heading_style}} \|SO terms
	\|\|		\|\|

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	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\| id="V4a413aba1592f" class=" tableEdit Gene_location_table"		{\| id="V4a413aba1592f" class=" tableEdit Gene_location_table"
	\|-		\|- {{table_heading_style}}
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
	\|-		\|-
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	*		*
	****************************************************************************************** -->{{Product_interactions_help}}		****************************************************************************************** -->{{Product_interactions_help}}
	{\| id="T4a413aba1f82d" class=" tableEdit Product_interactions_table"		{\| id="T4a413aba1f82d" class=" tableEdit Product_interactions_table dataTable"
	\|-		\|- {{table heading style}}
	!\|Partner Type!!Partner!!Notes!!References!!Evidence		!\|Partner Type!!Partner!!Notes!!References!!Evidence
	\|-		\|-
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	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="D4a413aba21605" class=" tableEdit Cis_Element_allele_table"		{\| id="D4a413aba21605" class=" tableEdit Cis_Element_allele_table"
	\|-		\|- {{table_heading_style}}
	!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments

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	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\| id="M4a413aba22b6f" class=" tableEdit Gene_resource_table"		{\| id="M4a413aba22b6f" class=" tableEdit Gene_resource_table"
	\|-		\|- {{table_heading_style}}
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference

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	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\| id="N4a413aba24414" class=" tableEdit Gene_accessions_table"		{\| id="N4a413aba24414" class=" tableEdit Gene_accessions_table"
	\|-		\|- {{table_heading_style}}
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes

127.0.0.1: Update TableEdit tables.

2010-01-09T00:21:29Z

Update TableEdit tables.

← Older revision		Revision as of 00:21, 9 January 2010
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|~~border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="U4a413ab9aedf9" class=" tableEdit Cis_element_summary_table"

	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Standard Name		!align=left \|Standard Name
	\|\|		\|\|
	''lambda attP''		''lambda attP''
	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Synonyms		!align=left \|Synonyms
	\|\|		\|\|

	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Function		!align=left \|Function
	\|\|		\|\|
	phage attachment site		phage attachment site
	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|Location		!align=left \|Location
	\|\|		\|\|
	approximately nt 27 571 - 27 813 (PMID:6246439)		approximately nt 27 571 - 27 813 (PMID:6246439)
Line 29:		Line 29:
	''attP'' core sequence located at nt 27 721 - 27 735 (PMID:6246439)		''attP'' core sequence located at nt 27 721 - 27 735 (PMID:6246439)
	\|-		\|-
	!align=left ~~{{table_heading_style}}~~ \|SO terms		!align=left \|SO terms
	\|\|		\|\|


	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.U4a413ab9aedf9&page=164833&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table] \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.U4a413ab9aedf9&page=164833&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table]</span> \|\|
	\|}		\|}
	<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.U4a413ab9aedf9--></protect>		<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.U4a413ab9aedf9--></protect>
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	*		*
	****************************************************************************************** -->{{Gene_location_help}}		****************************************************************************************** -->{{Gene_location_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="V4a413aba1592f" class=" tableEdit Gene_location_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links		!\|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
	\|-		\|-
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	{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|27571\|27813\|FASTA Dump}}		{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|27571\|27813\|FASTA Dump}}

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.V4a413aba1592f&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.V4a413aba1592f&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.V4a413aba1592f--></protect>		<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.V4a413aba1592f--></protect>
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	*		*
	****************************************************************************************** -->{{Product_interactions_help}}		****************************************************************************************** -->{{Product_interactions_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="T4a413aba1f82d" class=" tableEdit Product_interactions_table"
	\|- ~~{{table heading style}}~~		\|-
	!\|Partner Type!!Partner!!Notes!!References!!Evidence		!\|Partner Type!!Partner!!Notes!!References!!Evidence
	\|-		\|-
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	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.T4a413aba1f82d&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table] \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.T4a413aba1f82d&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.T4a413aba1f82d--></protect>		<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.T4a413aba1f82d--></protect>
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="D4a413aba21605" class=" tableEdit Cis_Element_allele_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments		!\|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.D4a413aba21605&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table] \|\| \|\| \|\| \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.D4a413aba21605&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.D4a413aba21605--></protect>		<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.D4a413aba21605--></protect>
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	*		*
	****************************************************************************************** -->{{Gene_resources_help}}		****************************************************************************************** -->{{Gene_resources_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="M4a413aba22b6f" class=" tableEdit Gene_resource_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Resource!!Resource Type!!Source!!Notes/Reference		!\|Resource!!Resource Type!!Source!!Notes/Reference

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.M4a413aba22b6f&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table] \|\| \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.M4a413aba22b6f&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> \|\| \|\| \|\|
	\|}		\|}
	<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.M4a413aba22b6f--></protect>		<!--box uid=63ce1649aab8b3180235b0af7618f667.164833.M4a413aba22b6f--></protect>
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	*		*
	****************************************************************************************** -->{{Gene_accessions_help}}		****************************************************************************************** -->{{Gene_accessions_help}}
	{\|~~class = 'sortable' border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;~~"		{\| id="N4a413aba24414" class=" tableEdit Gene_accessions_table"
	\|- ~~{{table_heading_style}}~~		\|-
	!\|Database!!Accession!!Notes		!\|Database!!Accession!!Notes

	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
	\|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.N4a413aba24414&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] \|\| \|\|		\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164833.N4a413aba24414&page=164833&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> \|\| \|\|
	\|}		\|}
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127.0.0.1: Fixing references section.

2009-06-26T16:04:09Z

Fixing references section.

← Older revision		Revision as of 16:04, 26 June 2009
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	{{BacktoTop}}		{{BacktoTop}}
	{{RefHelp}}		{{RefHelp}}
	<references/>		<references />

	===Categories===		===Categories===
	[[Category:Phage lambda:Cis_Element]]		[[Category:Phage lambda:Cis_Element]]

Bmcintosh: /* Notes */

2009-06-24T15:47:47Z

Notes

← Older revision		Revision as of 15:47, 24 June 2009
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	===Notes===		===Notes===
	In the free phage, the ''att'' site is referred to as ''attP'' (<u>p</u>hage <u>att</u>achment site) while the corresponding site in a host genome is called ''attB'' (<u>b</u>acterial <u>att</u>achment site). After integration occurs to create a prophage, these sites are then known as ''attL'' (<u>l</u>eft end of prophage) and ''attR'' (<u>r</u>ight end of prophage). Reviewed in <u>Lambda II.</u><<ref name=LIB:Lambda_II/>		In the free phage, the ''att'' site is referred to as ''attP'' (<u>p</u>hage <u>att</u>achment site) while the corresponding site in a host genome is called ''attB'' (<u>b</u>acterial <u>att</u>achment site). After integration occurs to create a prophage, these sites are then known as ''attL'' (<u>l</u>eft end of prophage) and ''attR'' (<u>r</u>ight end of prophage). Reviewed in <u>Lambda II.</u><ref name=LIB:Lambda_II/>

	== Location and Sequence ==		== Location and Sequence ==

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-24T15:33:11Z

Table edited by Bmcintosh via TableEdit

@@ Line 103: / Line 103: @@
+|
 PMID:2958633
+|

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-24T15:31:24Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 15:31, 24 June 2009
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	\|		\|
	PMID:2958633		PMID:159130, PMID:2958633
	\|		\|

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-24T15:27:40Z

Table edited by Bmcintosh via TableEdit

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 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
 |-class='sortbottom'

Bmcintosh: /* Notes */

2009-06-23T22:22:33Z

Notes

← Older revision		Revision as of 22:22, 23 June 2009
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	===Notes===		===Notes===
	In the free phage, the ''att'' site is referred to as ''attP'' (<u>p</u>hage <u>att</u>achment site) while the corresponding site in a host genome is called ''attB'' (<u>b</u>acterial <u>att</u>achment site). After integration occurs to create a prophage, these sites are then known as ''attL'' (<u>l</u>eft end of prophage) and ''attR'' (<u>r</u>ight end of prophage). Reviewed in <u>Lambda II.</u><ref~~>Lambda II Monograph 13. Edited by ROGER W. HENDRIX, JEFFREY W. ROBERTS,FRANKLIN W. STAHL and ROBERT A. WEISBERG. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724. 1983<~~/~~ref~~>		In the free phage, the ''att'' site is referred to as ''attP'' (<u>p</u>hage <u>att</u>achment site) while the corresponding site in a host genome is called ''attB'' (<u>b</u>acterial <u>att</u>achment site). After integration occurs to create a prophage, these sites are then known as ''attL'' (<u>l</u>eft end of prophage) and ''attR'' (<u>r</u>ight end of prophage). Reviewed in <u>Lambda II.</u><<ref name=LIB:Lambda_II/>

	== Location and Sequence ==		== Location and Sequence ==

Bmcintosh: Table edited by Bmcintosh via TableEdit

2009-06-23T21:13:24Z

Table edited by Bmcintosh via TableEdit

← Older revision		Revision as of 21:13, 23 June 2009
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	\|		\|
	NC_001416: ~~27718~~..~~27746~~<br />{{GBrowseFigureByCoord\|~~27713~~\|~~27751~~\|bacteriophage_lambda\|NC_001416}}		NC_001416: 27571..27813<br />{{GBrowseFigureByCoord\|27521\|27863\|bacteriophage_lambda\|NC_001416}}
	\|		\|
	{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|~~27718~~\|~~27746~~\|Gbrowse (Bacteriophage lambda)}}		{{GBrowseLink\|bacteriophage_lambda\|NC_001416\|27571\|27813\|Gbrowse (Bacteriophage lambda)}}
	\|		\|
	{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|~~27718~~\|~~27746~~\|FASTA Dump}}		{{GBrowseFastaLink\|bacteriophage_lambda\|NC_001416\|27571\|27813\|FASTA Dump}}

	\|-class='sortbottom'		\|-class='sortbottom'