AlignACE - Revision history

127.0.0.1: /Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

2010-05-23T00:11:03Z

/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php

← Older revision		Revision as of 00:11, 23 May 2010
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\| id="N46afcc24a73c4" class=" tableEdit Database_table"		{\| {{Prettytable}} width='30%' align="right" id="N46afcc24a73c4" class=" tableEdit Database_table"

	\|-		\|-
	!align=left \|Link/URL:		!align=left {{table heading style}} \|Link/URL:
	\|\|		\|\|
	[http://arep.med.harvard.edu/ecoli_matrices AlignACE]		[http://arep.med.harvard.edu/ecoli_matrices AlignACE]
	\|-		\|-
	!align=left \|What:		!align=left {{table heading style}} \|What:
	\|\|		\|\|
	Matrices which search for additional binding sites in the E. coli genomic sequence.		Matrices which search for additional binding sites in the E. coli genomic sequence.
	\|-		\|-
	!align=left \|Who:		!align=left {{table heading style}} \|Who:
	\|\|		\|\|
	Abigail Manson McGuire		Abigail Manson McGuire
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	Harvard Medical School		Harvard Medical School
	\|-		\|-
	!align=left \|Updates:		!align=left {{table heading style}} \|Updates:
	\|\|		\|\|
	<i>Last Updated: Nov. 1998</i>		<i>Last Updated: Nov. 1998</i>
	\|-		\|-
	!align=left \|Upcoming events:		!align=left {{table heading style}} \|Upcoming events:
	\|\|		\|\|

	\|-		\|-
	!align=left \|Web Services:		!align=left {{table heading style}} \|Web Services:
	\|\|		\|\|

127.0.0.1: Update TableEdit tables.

2010-01-08T23:57:49Z

Update TableEdit tables.

← Older revision		Revision as of 23:57, 8 January 2010
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|~~border~~="2" ~~cellpadding~~="~~4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}} width='30%' align="right~~"		{\| id="N46afcc24a73c4" class=" tableEdit Database_table"

	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Link/URL:		!align=left \|Link/URL:
	\|\|		\|\|
	[http://arep.med.harvard.edu/ecoli_matrices AlignACE]		[http://arep.med.harvard.edu/ecoli_matrices AlignACE]
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|What:		!align=left \|What:
	\|\|		\|\|
	Matrices which search for additional binding sites in the E. coli genomic sequence.		Matrices which search for additional binding sites in the E. coli genomic sequence.
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Who:		!align=left \|Who:
	\|\|		\|\|
	Abigail Manson McGuire		Abigail Manson McGuire
Line 31:		Line 31:
	Harvard Medical School		Harvard Medical School
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Updates:		!align=left \|Updates:
	\|\|		\|\|
	<i>Last Updated: Nov. 1998</i>		<i>Last Updated: Nov. 1998</i>
	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Upcoming events:		!align=left \|Upcoming events:
	\|\|		\|\|

	\|-		\|-
	!align=left ~~{{table heading style}}~~ \|Web Services:		!align=left \|Web Services:
	\|\|		\|\|


	\|-class=~~'sortbottom'~~		\|- class="tableEdit_footer"
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127.0.0.1: Fixing references section.

2009-06-26T16:03:09Z

Fixing references section.

← Older revision		Revision as of 16:03, 26 June 2009
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	==References==		==References==
			{{BacktoTop}}
	{{RefHelp}}		{{RefHelp}}
	<references/>		<references />

	==External Links==		==External Links==
	[http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}]		[http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}]
	==Discussion of {{PAGENAME}} on other websites==		==Discussion of {{PAGENAME}} on other websites==

Amandasupak: Table edited by Amandasupak via TableEdit

2009-06-25T20:36:38Z

Table edited by Amandasupak via TableEdit

← Older revision		Revision as of 20:36, 25 June 2009
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	!align=left {{table heading style}} \|Updates:		!align=left {{table heading style}} \|Updates:
	\|\|		\|\|
			<i>Last Updated: Nov. 1998</i>
	\|-		\|-
	!align=left {{table heading style}} \|Upcoming events:		!align=left {{table heading style}} \|Upcoming events:

Amandasupak: home page image

2009-06-25T20:35:28Z

home page image

← Older revision		Revision as of 20:35, 25 June 2009
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	__NOTOC__		__NOTOC__
	==About {{PAGENAME}}==		==About {{PAGENAME}}==
			[[Image:Alignace_home.jpg\|right\|thumb\|300px\|Home Page]]
	The [http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}] website has a collection of predicted transcription factor binding sites based on running [[scanACE]], an algorithm published<ref>PMID:9813115</ref> by the Church lab against the MG1655 genome.		The [http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}] website has a collection of predicted transcription factor binding sites based on running [[scanACE]], an algorithm published<ref>PMID:9813115</ref> by the Church lab against the MG1655 genome.
	==Content==		==Content==

Amandasupak: Table edited by Amandasupak via TableEdit

2009-06-03T21:14:50Z

Table edited by Amandasupak via TableEdit

← Older revision		Revision as of 21:14, 3 June 2009
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	!align=left {{table heading style}} \|What:		!align=left {{table heading style}} \|What:
	\|\|		\|\|
			Matrices which search for additional binding sites in the E. coli genomic sequence.
	\|-		\|-
	!align=left {{table heading style}} \|Who:		!align=left {{table heading style}} \|Who:
	\|\|		\|\|
	Abigail Manson McGuire		Abigail Manson McGuire

	Genetics Dept.		Genetics Dept.

	Harvard Medical School		Harvard Medical School
	\|-		\|-

Amandasupak: Table edited by Amandasupak via TableEdit

2009-06-03T21:11:55Z

Table edited by Amandasupak via TableEdit

← Older revision		Revision as of 21:11, 3 June 2009
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	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}} width='30%' align=right		{\|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}} width='30%' align="right"

	\|-		\|-
	!align=left {{table heading style}} \|Link/URL:		!align=left {{table heading style}} \|Link/URL:
	\|\|		\|\|
	~~Abigail Manson McGuire~~		[http://arep.med.harvard.edu/ecoli_matrices AlignACE]
	~~Genetics Dept~~.
	~~Harvard Medical School~~
	\|-		\|-
	!align=left {{table heading style}} \|What:		!align=left {{table heading style}} \|What:
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	!align=left {{table heading style}} \|Who:		!align=left {{table heading style}} \|Who:
	\|\|		\|\|
	~~[http://arep~~.~~med.harvard.edu/ecoli_matrices AlignACE]~~		Abigail Manson McGuire
			Genetics Dept.
			Harvard Medical School
	\|-		\|-
	!align=left {{table heading style}} \|Updates:		!align=left {{table heading style}} \|Updates:
	\|\|		\|\|
	~~in 1998?~~
	\|-		\|-
	!align=left {{table heading style}} \|Upcoming events:		!align=left {{table heading style}} \|Upcoming events:
	\|\|		\|\|
	~~none~~
	\|-		\|-
	!align=left {{table heading style}} \|Web Services:		!align=left {{table heading style}} \|Web Services:

JimHu: /* Technology */

2009-01-27T10:12:38Z

Technology

← Older revision		Revision as of 10:12, 27 January 2009
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	*[[RegulonDB]]		*[[RegulonDB]]
	==Technology==		==Technology==
	===Web Services/API==+		===Web Services/API===

	==Discussion==		==Discussion==

JimHu at 10:12, 27 January 2009

2009-01-27T10:12:18Z

← Older revision		Revision as of 10:12, 27 January 2009
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	{{Database_table_help}}		{{Database_table_help}}
	__NOTOC__		__NOTOC__
	=About {{PAGENAME}}=		==About {{PAGENAME}}==
	The [http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}] website has a collection of predicted transcription factor binding sites based on running [[scanACE]], an algorithm published<ref>PMID:9813115</ref> by the Church lab against the MG1655 genome.		The [http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}] website has a collection of predicted transcription factor binding sites based on running [[scanACE]], an algorithm published<ref>PMID:9813115</ref> by the Church lab against the MG1655 genome.
	=Content=		==Content==
	AlignACE has a table with links from the 59 DNA-binding proteins for which they have predicted binding sites by extrapolation from footprinting data. There are also summary tables and the code for scanACE and alignACE can be downloaded via a link to a Church lab website. These programs implement the approach of Berg and von Hippel <ref>PMID:3045325</ref><ref>PMID:3612791</ref>		AlignACE has a table with links from the 59 DNA-binding proteins for which they have predicted binding sites by extrapolation from footprinting data. There are also summary tables and the code for scanACE and alignACE can be downloaded via a link to a Church lab website. These programs implement the approach of Berg and von Hippel <ref>PMID:3045325</ref><ref>PMID:3612791</ref>
	=Using {{PAGENAME}}=		==Using {{PAGENAME}}==
	==Browsing==		===Browsing===
	==Searching==		===Searching===
	==Usage examples==		===Usage examples===
	''Add links to additional pages describing success stories here.''		''Add links to additional pages describing success stories here.''

	=Other sites with related content=		==Other sites with related content==
	[[RegulonDB]]		*[[RegulonDB]]
	=Technology=		==Technology==
	==Web Services/API==		===Web Services/API==+
	=Discussion=		==Discussion==

	=References=		==References==
			{{RefHelp}}
	<references/>		<references/>

	=External Links=		==External Links==
	[http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}]		[http://arep.med.harvard.edu/ecoli_matrices {{PAGENAME}}]
	==Discussion of {{PAGENAME}} on other websites==		==Discussion of {{PAGENAME}} on other websites==

imported>Wikientrybot: Move help links into the tag inside templates.

2009-01-21T22:22:47Z

Move help links into the <above> tag inside templates.

← Older revision		Revision as of 22:22, 21 January 2009
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	<!--		<!--
	******************************************************************************************		******************************************************************************************
	*		*
	* PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table.		* PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table.
	*		*
	****************************************************************************************** -->		****************************************************************************************** -->
	{\|{{Prettytable}}		{\|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}} width='30%' align=right

	\|-		\|-
	!{{table heading style}} \|~~Who~~:		!align=left {{table heading style}} \|Link/URL:
	\|		\|\|
	Abigail Manson McGuire		Abigail Manson McGuire
	Genetics Dept.		Genetics Dept.
	Harvard Medical School		Harvard Medical School
	\|-		\|-
	!{{table heading style}} \|What:		!align=left {{table heading style}} \|What:
	\|		\|\|

	\|-		\|-
	!{{table heading style}} \|~~Link/URL~~:		!align=left {{table heading style}} \|Who:
	\|		\|\|
	[http://arep.med.harvard.edu/ecoli_matrices AlignACE]		[http://arep.med.harvard.edu/ecoli_matrices AlignACE]
	\|-		\|-
	!{{table heading style}} \|Updates:		!align=left {{table heading style}} \|Updates:
	\|		\|\|
	in 1998?		in 1998?
	\|-		\|-
	!{{table heading style}} \|Upcoming events:		!align=left {{table heading style}} \|Upcoming events:
	\|		\|\|
	none		none
	\|-		\|-
	!{{table heading style}} \|Web Services:		!align=left {{table heading style}} \|Web Services:
	\|		\|\|

	\|-
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