EcoliWiki - User contributions [en]

mfold

2011-09-06T18:06:04Z

Zukerm: /* Short Description */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="W4a43fa3bad170" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/?q=mfold mfold]
|-
!align=left {{table heading style}} |What:
||
Tool for predicting the secondary structure of RNA and DNA.
|-
!align=left {{table heading style}} |Who:
||
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163368.W4a43fa3bad170&page=163368&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:mfold_home.png|right|thumb|300px|Home Page]]

Home page for the [http://nar.oxfordjournals.org/content/31/13/3406.full mfold web server]. The mfold software may be [http://mfold.rit.albany.edu/?q=mfold/download-mfold downloaded] from this site.

== Links ==
[http://mfold.rit.albany.edu/?q=mfold mfold web server]

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==
mfold has now been replaced by UNAfold. mfold_util comes with UNAfold by is also independently updated. Older versions can still be found and downloaded.

== See Also ==
[[UNAfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

File:mfold home.png

2011-09-06T18:01:59Z

Zukerm:

mfold

2011-09-06T17:59:55Z

Zukerm: /* Links */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="W4a43fa3bad170" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/?q=mfold mfold]
|-
!align=left {{table heading style}} |What:
||
Tool for predicting the secondary structure of RNA and DNA.
|-
!align=left {{table heading style}} |Who:
||
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163368.W4a43fa3bad170&page=163368&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:Mfold_home.jpg|right|thumb|300px|Home Page]]
{{UserContentHelp}}

== Links ==
[http://mfold.rit.albany.edu/?q=mfold mfold web server]

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==
mfold has now been replaced by UNAfold. mfold_util comes with UNAfold by is also independently updated. Older versions can still be found and downloaded.

== See Also ==
[[UNAfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

mfold

2011-09-06T17:59:01Z

Zukerm: Table edited by Zukerm via TableEdit

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="W4a43fa3bad170" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/?q=mfold mfold]
|-
!align=left {{table heading style}} |What:
||
Tool for predicting the secondary structure of RNA and DNA.
|-
!align=left {{table heading style}} |Who:
||
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163368.W4a43fa3bad170&page=163368&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:Mfold_home.jpg|right|thumb|300px|Home Page]]
{{UserContentHelp}}

== Links ==
http://mfold.bioinfo.rpi.edu/

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==
mfold has now been replaced by UNAfold. mfold_util comes with UNAfold by is also independently updated. Older versions can still be found and downloaded.

== See Also ==
[[UNAfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

UNAfold

2011-09-06T17:48:18Z

Zukerm: /* Links */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="A4a43fe7039fd6" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/ UNAfold]
|-
!align=left {{table heading style}} |What:
||
Software package for folding of single stranded RNA or DNA
|-
!align=left {{table heading style}} |Who:
||
*Nicholas R. Markham
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163369.A4a43fe7039fd6&page=163369&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:UNAFold_home.png|right|thumb|300px|Home Page]]
{{UserContentHelp}}

UNAFold (Unified Nucleic Acid folding) is a software package for folding of single stranded RNA or DNA as well as hybridization between strands.

== Links ==
UNAFold web site [http://mfold.rna.albany.edu/ home page]. 
UNAFold software [http://mfold.rna.albany.edu/?q=DINAMelt/software download]. 
UNAFold [http://mfold.rna.albany.edu/?q=unafold-man-pages man pages].

== Requirements ==
*Perl 5.6.1 or greater
*Programs/libraries which extend the functionality of UNAFold:
**glut/OpenGL - for interactive graphics in hybrid-plot
**GD Library - for static graphics in hybrid-plot-ng
**gnuplot - for plots in hybrid2.pl

== User notes ==

== See Also ==
[[mfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

UNAfold

2011-09-06T17:46:13Z

Zukerm: /* Links */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="A4a43fe7039fd6" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/ UNAfold]
|-
!align=left {{table heading style}} |What:
||
Software package for folding of single stranded RNA or DNA
|-
!align=left {{table heading style}} |Who:
||
*Nicholas R. Markham
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163369.A4a43fe7039fd6&page=163369&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:UNAFold_home.png|right|thumb|300px|Home Page]]
{{UserContentHelp}}

UNAFold (Unified Nucleic Acid folding) is a software package for folding of single stranded RNA or DNA as well as hybridization between strands.

== Links ==
[http://mfold.rna.albany.edu/ UNAFold] web site home page. 
http://mfold.rna.albany.edu/?q=DINAMelt/software   UNAFold software download 
http://mfold.rna.albany.edu/?q=unafold-man-pages   UNAFold man pages

== Requirements ==
*Perl 5.6.1 or greater
*Programs/libraries which extend the functionality of UNAFold:
**glut/OpenGL - for interactive graphics in hybrid-plot
**GD Library - for static graphics in hybrid-plot-ng
**gnuplot - for plots in hybrid2.pl

== User notes ==

== See Also ==
[[mfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

UNAfold

2011-09-06T17:45:10Z

Zukerm: /* Short Description */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="A4a43fe7039fd6" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/ UNAfold]
|-
!align=left {{table heading style}} |What:
||
Software package for folding of single stranded RNA or DNA
|-
!align=left {{table heading style}} |Who:
||
*Nicholas R. Markham
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163369.A4a43fe7039fd6&page=163369&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:UNAFold_home.png|right|thumb|300px|Home Page]]
{{UserContentHelp}}

UNAFold (Unified Nucleic Acid folding) is a software package for folding of single stranded RNA or DNA as well as hybridization between strands.

== Links ==
http://mfold.rna.albany.edu/   UNAFold web site home page. 
http://mfold.rna.albany.edu/?q=DINAMelt/software   UNAFold software download 
http://mfold.rna.albany.edu/?q=unafold-man-pages   UNAFold man pages

== Requirements ==
*Perl 5.6.1 or greater
*Programs/libraries which extend the functionality of UNAFold:
**glut/OpenGL - for interactive graphics in hybrid-plot
**GD Library - for static graphics in hybrid-plot-ng
**gnuplot - for plots in hybrid2.pl

== User notes ==

== See Also ==
[[mfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

File:UNAFold home.png

2011-09-06T17:35:41Z

Zukerm: UNAFold web server

The UNAFold web server at the [http://www.albany.edu/rna/ RNA Institute], SUNY Albany became operative on November 5, 2010. It replaces the older [http://nar.oxfordjournals.org/content/31/13/3406.full mfold] and [http://nar.oxfordjournals.org/content/33/suppl_2/W577.full DINAMelt] web servers that were hosted by Rensselaer Polytechnic Institute. Both the [http://mfold.rna.albany.edu/?q=DINAMelt/software UNAFold]
and older [http://mfold.rit.albany.edu/?q=mfold/download-mfold mfold] software may be downloaded from this site. On line [http://mfold.rna.albany.edu/?q=unafold-man-pages man] pages are available for [http://www.springerprotocols.com/Abstract/doi/10.1007/978-1-60327-429-6_1 UNAFold].

File:UNAFold home.png

2011-09-06T17:32:38Z

Zukerm:

The UNAFold web server at the [http://www.albany.edu/rna/ RNA Institute], SUNY Albany became operative on November 5, 2010. It replaces the older <a href="http://nar.oxfordjournals.org/content/31/13/3406.full">mfold</a> and <a href="http://nar.oxfordjournals.org/content/33/suppl_2/W577.full">DINAMelt</a> web servers that were hosted by Rensselaer Polytechnic Institute. Both the <a href="http://mfold.rna.albany.edu/?q=DINAMelt/software">UNAFold</a>
and older <a href="http://mfold.rit.albany.edu/?q=mfold/download-mfold">mfold</a> software may be downloaded from this site. On line <a href="http://mfold.rna.albany.edu/?q=unafold-man-pages">man</a> pages are available for <a href="http://www.springerprotocols.com/Abstract/doi/10.1007/978-1-60327-429-6_1">UNAFold</a>.

File:UNAFold home.png

2011-09-06T17:27:56Z

Zukerm: The UNAFold web server at the <a href="http://www.albany.edu/rna/">RNA Institute</a>, SUNY Albany became operative on November 5, 2010. It replaces the older <a href="http://nar.oxfordjournals.org/content/31/13/3406.full">mfold</a> and <a href="http://nar

The UNAFold web server at the <a href="http://www.albany.edu/rna/">RNA Institute</a>, SUNY Albany became operative on November 5, 2010. It replaces the older <a href="http://nar.oxfordjournals.org/content/31/13/3406.full">mfold</a> and <a href="http://nar.oxfordjournals.org/content/33/suppl_2/W577.full">DINAMelt</a> web servers that were hosted by Rensselaer Polytechnic Institute. Both the <a href="http://mfold.rna.albany.edu/?q=DINAMelt/software">UNAFold</a>
and older <a href="http://mfold.rit.albany.edu/?q=mfold/download-mfold">mfold</a> software may be downloaded from this site. On line <a href="http://mfold.rna.albany.edu/?q=unafold-man-pages">man</a> pages are available for <a href="http://www.springerprotocols.com/Abstract/doi/10.1007/978-1-60327-429-6_1">UNAFold</a>.

File:UMAFold home.png

2011-09-06T17:06:11Z

Zukerm:

UNAfold

2011-09-06T16:48:53Z

Zukerm: /* Links */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="A4a43fe7039fd6" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/ UNAfold]
|-
!align=left {{table heading style}} |What:
||
Software package for folding of single stranded RNA or DNA
|-
!align=left {{table heading style}} |Who:
||
*Nicholas R. Markham
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163369.A4a43fe7039fd6&page=163369&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:Unafold_home.jpg|right|thumb|300px|Home Page]]
{{UserContentHelp}}

UNAfold (Unified Nucleic Acid folding) is a software package for folding of single stranded RNA or DNA as well as hybridization between strands.

== Links ==
http://mfold.rna.albany.edu/   UNAFold web site home page. 
http://mfold.rna.albany.edu/?q=DINAMelt/software   UNAFold software download 
http://mfold.rna.albany.edu/?q=unafold-man-pages   UNAFold man pages

== Requirements ==
*Perl 5.6.1 or greater
*Programs/libraries which extend the functionality of UNAFold:
**glut/OpenGL - for interactive graphics in hybrid-plot
**GD Library - for static graphics in hybrid-plot-ng
**gnuplot - for plots in hybrid2.pl

== User notes ==

== See Also ==
[[mfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

UNAfold

2011-09-06T16:48:15Z

Zukerm: Table edited by Zukerm via TableEdit

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="A4a43fe7039fd6" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://mfold.rna.albany.edu/ UNAfold]
|-
!align=left {{table heading style}} |What:
||
Software package for folding of single stranded RNA or DNA
|-
!align=left {{table heading style}} |Who:
||
*Nicholas R. Markham
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163369.A4a43fe7039fd6&page=163369&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:Unafold_home.jpg|right|thumb|300px|Home Page]]
{{UserContentHelp}}

UNAfold (Unified Nucleic Acid folding) is a software package for folding of single stranded RNA or DNA as well as hybridization between strands.

== Links ==
http://mfold.rit.albany.edu/   UNAFold web site home page. 
http://mfold.rit.albany.edu/?q=DINAMelt/software   UNAFold software download 
http://mfold.rit.albany.edu/?q=unafold-man-pages   UNAFold man pages

== Requirements ==
*Perl 5.6.1 or greater
*Programs/libraries which extend the functionality of UNAFold:
**glut/OpenGL - for interactive graphics in hybrid-plot
**GD Library - for static graphics in hybrid-plot-ng
**gnuplot - for plots in hybrid2.pl

== User notes ==

== See Also ==
[[mfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

UNAfold

2011-09-06T16:45:24Z

Zukerm: /* Links */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="A4a43fe7039fd6" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://dinamelt.bioinfo.rpi.edu/unafold/ UNAfold]
|-
!align=left {{table heading style}} |What:
||
Software package for folding of single stranded RNA or DNA
|-
!align=left {{table heading style}} |Who:
||
*Nicholas R. Markham
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163369.A4a43fe7039fd6&page=163369&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:Unafold_home.jpg|right|thumb|300px|Home Page]]
{{UserContentHelp}}

UNAfold (Unified Nucleic Acid folding) is a software package for folding of single stranded RNA or DNA as well as hybridization between strands.

== Links ==
http://mfold.rit.albany.edu/   UNAFold web site home page. 
http://mfold.rit.albany.edu/?q=DINAMelt/software   UNAFold software download 
http://mfold.rit.albany.edu/?q=unafold-man-pages   UNAFold man pages

== Requirements ==
*Perl 5.6.1 or greater
*Programs/libraries which extend the functionality of UNAFold:
**glut/OpenGL - for interactive graphics in hybrid-plot
**GD Library - for static graphics in hybrid-plot-ng
**gnuplot - for plots in hybrid2.pl

== User notes ==

== See Also ==
[[mfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

UNAfold

2011-09-06T16:41:30Z

Zukerm: /* Links */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}
<protect>

{| {{Prettytable}} width='30%' align="right" id="A4a43fe7039fd6" class=" tableEdit Biotools"

|-
!align=left {{table heading style}} |Link/URL:
||
[http://dinamelt.bioinfo.rpi.edu/unafold/ UNAfold]
|-
!align=left {{table heading style}} |What:
||
Software package for folding of single stranded RNA or DNA
|-
!align=left {{table heading style}} |Who:
||
*Nicholas R. Markham
*Michael Zuker

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.163369.A4a43fe7039fd6&page=163369&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table] ||
|}
</protect>

== Short Description ==
[[Image:Unafold_home.jpg|right|thumb|300px|Home Page]]
{{UserContentHelp}}

UNAfold (Unified Nucleic Acid folding) is a software package for folding of single stranded RNA or DNA as well as hybridization between strands.

== Links ==
http://mfold.rit.albany.edu/
http://mfold.rit.albany.edu/?q=DINAMelt/software
http://mfold.rit.albany.edu/?q=unafold-man-pages

== Requirements ==
*Perl 5.6.1 or greater
*Programs/libraries which extend the functionality of UNAFold:
**glut/OpenGL - for interactive graphics in hybrid-plot
**GD Library - for static graphics in hybrid-plot-ng
**gnuplot - for plots in hybrid2.pl

== User notes ==

== See Also ==
[[mfold]]

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]