EcoliWiki - User contributions [en]

entB:Gene

2014-08-15T20:21:47Z

Wameza: Table edited by Wameza via TableEdit

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<noinclude>{{TabsTop}}
{{Tab|Quickview|entB}}{{Tab On|Gene|entB}}{{Tab|Gene Product(s)|entB}}{{Tab|Expression|entB}}{{Tab|Evolution|entB}}{{Tab|On One Page|entB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="G46a9b44b34f99" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''entB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Enterochelin
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0588, b0595, JW0587, entG''<ref name='LIB:Riley_2006'/>, entG''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11753.G46a9b44b34f99&page=11753&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9b44bcf91f" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
13.51 minutes 
|
MG1655: 626917..627774 <gbrowseImage>
name=NC_000913:626917..627774
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10260 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|625917|628774|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|626917|627774|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10260 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 610402..611259 <gbrowseImage>
name=NC_012967:610402..611259
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|610402|611259|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|610402|611259|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 529677..530534 <gbrowseImage>
name=NC_012759:529677..530534
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|529677|530534|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|529677|530534|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 626917..627774 <gbrowseImage>
name=NC_007779:626917..627774
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|625917|628774|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|626917|627774|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 566249..567106 <gbrowseImage>
name=NC_010473:566249..567106
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|564535|568820|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|564535|568820|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 679509..680366 <gbrowseImage>
name=NC_010473:679509..680366
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|677795|682080|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|677795|682080|FASTA Dump}}

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|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46a9b44c79cc3" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11753.G46a9b44c79cc3&page=11753&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9b44cbb6f5" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''entB(del)'' (Keio:JW0587)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=106985 CGSC8704]<ref name='LIB:cgsc'/>
|

|-
|
''entB733(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100712|CGSC:100712]]
|

|-
|
entB(del)C
|
deletion
|
DELETION of C-terminal 25 amino acids of entB
|
Auxotrophies
|
deletion disrupts production of 2,3-Dihydrobenzoate which is an important intermediate of Enterobactin synthesis.
|
PMID:9214294
|

|
Figure 3.
|-
|
''entB''::Tn5 ''entG'' at the beginning of entB
|
insertion of Tn5 198 base pairs from ''entB'' termination codon
|

|
Auxotrophies
|
The coding sequence for EntG activity is found with in the ''entB'' 3' terminus. When EntB is disrupted then s is EntG. (table 2)
|
PMID 2172214
|

|
Strain: AB1515
|-
|
''entB''::Tn5 ''entG'' at the end of entB
|
an insertion of a Tn5 at the end of ''entB'' sequence
|

|
Auxotrophies
|
No effect on ''entG'' activity
|
PMID 2172214
|

|
Strain: AB1515

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|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J4e04ba62545cd" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11753.J4e04ba62545cd&page=11753&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9b44d64965" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0587
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGCTATTCCAAAATTACAGGC

Primer 2:CCTTTCACCTCGCGGGAGAGTAG
|-
|
[[:Category:Kohara_Phage:25A7|25A7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=165 Genobase]
|
PMID:3038334
|-
|
[[purK:Gene|purK79::Tn10]]
|
Linked marker
|
CAG12171 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39380 CGSC7342]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 1% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:purE79::Tn10
|-
|
[[dsbG:Gene|dsbG601::Tn10]]
|
Linked marker
|
CAG12149 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39387 CGSC7346]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 74% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbd-601::Tn10, zbe-601::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11753.Y46a9b44d64965&page=11753&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E46a9b44ded248" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10260
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10260
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000254
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946178 GeneID:946178]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[EchoBASE]]
|
EchoBASE:EB0256
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0002052
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a6d1c0e630d" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11753.Y46a6d1c0e630d&page=11753&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ent genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

pheA:Gene

2014-01-14T18:54:50Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|pheA}}{{Tab On|Gene|pheA}}{{Tab|Gene Product(s)|pheA}}{{Tab|Expression|pheA}}{{Tab|Evolution|pheA}}{{Tab|On One Page|pheA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9e1da4d09a" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''pheA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Phenylalanine
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2596, b2599, JW2580''<ref name='LIB:Riley_2006'/>, JW2580''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15767.U46a9e1da4d09a&page=15767&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46a9e1dacb747" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
58.96 minutes 
|
MG1655: 2735767..2736927 <gbrowseImage>
name=NC_000913:2735767..2736927
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10707 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2734767|2737927|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2735767|2736927|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10707 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2659152..2660312 <gbrowseImage>
name=NC_012967:2659152..2660312
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2659152|2660312|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2659152|2660312|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2621579..2622739 <gbrowseImage>
name=NC_012759:2621579..2622739
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2621579|2622739|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2621579|2622739|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2736401..2737561 <gbrowseImage>
name=NC_007779:2736401..2737561
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|2735401|2738561|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|2736401|2737561|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2827532..2828692 <gbrowseImage>
name=NC_010473:2827532..2828692
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2825212|2831012|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2825212|2831012|FASTA Dump}}

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9e1db856ad" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15767.N46a9e1db856ad&page=15767&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46a9e1dbcbb8e" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''pheA(del)'' (Keio:JW2580)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108329 CGSC10048]<ref name='LIB:cgsc'/>
|

|-
|
pheA18::Tn10
|
Insertion at 2,736,078 bp in [[MG1655]] (NC_000913)
|

|

|

|
adapted from Nichols ''et al.''<ref name ='LIB:Nichols_linked_Tn'/>
|
CAG12158 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40091 CGSC7421]<ref name='LIB:cgsc'/>
|
Synonyms:
|-
|
''pheA3::Mu''
|

|

|

|

|

|
[[cgscmutation:4849|CGSC:4849]]
|

|-
|
''pheA18::Tn10''
|

|

|

|

|

|
[[cgscmutation:7100|CGSC:7100]]
|

|-
|
''pheA97''
|

|

|

|

|

|
[[cgscmutation:7678|CGSC:7678]]
|

|-
|
''pheA7''
|

|

|

|

|

|
[[cgscmutation:9947|CGSC:9947]]
|

|-
|
''pheA905''
|

|

|

|

|

|
[[cgscmutation:10750|CGSC:10750]]
|

|-
|
''pheA2::Mu''
|

|

|

|

|

|
[[cgscmutation:11369|CGSC:11369]]
|

|-
|
''pheA3141::Tn10kan''
|

|

|

|

|
PMID:2540407
|
[[cgscmutation:40092|CGSC:40092]]
|

|-
|
''pheA762(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:102318|CGSC:102318]]
|

|-
|
''pheA''
|

|

|
Resistant to
|
Fluoro(4)phenylalanine resistance
|
PMID:4934063
|

|
table 2
|-
|
''pheA30''
|

|

|
Resistant to
|
Resistant to Fluoro(4)phenylalanine
|
PMID:1514806
|

|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O4e04c0fbdbcc0" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.15767.O4e04c0fbdbcc0&page=15767&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9e1dc85ca1" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2580
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCACATCGGAAAACCCGTTACT

Primer 2:CCGGTTGGATCAACAGGCACTAC
|-
|
[[:Category:Kohara_Phage:21D7|21D7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=437 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:E8F2|E8F2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=438 Genobase]
|
PMID:3038334
|-
|
[[nadB:Gene|nadB51::Tn10]]
|
Linked marker
|
CAG18480 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40090 CGSC7419]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 37% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[srlD:Gene|srlD3131::Tn10]]
|
Linked marker
|
CAG18642 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40097 CGSC7423]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zfh-3131::Tn10, zfi-3131::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15767.I46a9e1dc85ca1&page=15767&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="F46a9e1dd28dcf" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10707
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10707
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000699
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947081 GeneID:947081]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[EchoBASE]]
|
EchoBASE:EB0701
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0008545
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15767.F46a9e1dd28dcf&page=15767&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a6fe8848cc9" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15767.N46a6fe8848cc9&page=15767&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:phe genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

yneE:Gene

2013-10-28T19:30:05Z

Wameza: Table edited by Wameza via TableEdit

fic:Gene

2013-10-22T22:48:58Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|fic}}{{Tab On|Gene|fic}}{{Tab|Gene Product(s)|fic}}{{Tab|Expression|fic}}{{Tab|Evolution|fic}}{{Tab|On One Page|fic}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="M46a9f40b3144f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''fic''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Filamentation-cAMP
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3349, b3361, JW3324, fic-1''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17273.M46a9f40b3144f&page=17273&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9f40bb2bfd" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
75.2 minutes 
|
MG1655: 3489485..3488883 <gbrowseImage>
name=NC_000913:3488883..3489485
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10307 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3487883|3490485|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3488883|3489485|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10307 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3419368..3418766 <gbrowseImage>
name=NC_012967:3418766..3419368
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3418766|3419368|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3418766|3419368|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3376040..3376642 <gbrowseImage>
name=NC_012759:3376040..3376642
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3376040|3376642|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3376040|3376642|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 4148953..4149555 <gbrowseImage>
name=NC_007779:4148953..4149555
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|4147953|4150555|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|4148953|4149555|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3587230..3586628 <gbrowseImage>
name=NC_010473:3586628..3587230
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3585424|3588434|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3585424|3588434|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17273.W46a9f40bb2bfd&page=17273&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9f40c762f6" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17273.L46a9f40c762f6&page=17273&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V46a9f40cbecb9" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''fic(del)'' (Keio:JW3324)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108765 CGSC10484]<ref name='LIB:cgsc'/>
|

|-
|
ficG55R
|

|
G55R
|

|
Inhibitory effect on cell division induced by cAMP with temperature sensitivity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P20605 UniProt:P20605]
|-
|
''fic-1''
|

|

|

|

|

|
[[cgscmutation:41382|CGSC:41382]]
|

|-
|
''fic-769(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100860|CGSC:100860]]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17273.V46a9f40cbecb9&page=17273&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L4e04baf6e6e23" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17273.L4e04baf6e6e23&page=17273&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9f40d7f350" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3324
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGATAAATTCGGCGAAGG

Primer 2:CCtTCAGATTCCCCGGCTTCGCT
|-
|
[[:Category:Kohara_Phage:15C3|15C3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=624 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:4C5|4C5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=625 Genobase]
|
PMID:3038334
|-
|
[[smg:Gene|smg-3082::Tn10]]
|
Linked marker
|
CAG12071 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40240 CGSC7444]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 4% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10
|-
|
[[yhfT:Gene|zhf-3084::Tn10]]
|
Linked marker
|
CAG18456 = [http://cgsc2.biology.yale.edu/Strain.php?ID=61450 CGSC7576]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 61% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17273.L46a9f40d7f350&page=17273&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D46a9f40e27700" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10307
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10307
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000301
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947872 GeneID:947872]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[EchoBASE]]
|
EchoBASE:EB0303
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0010987
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17273.D46a9f40e27700&page=17273&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a70f2736fff" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17273.N46a70f2736fff&page=17273&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:fic genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

yeeU:Gene

2013-10-21T19:20:51Z

Wameza: Table edited by Wameza via TableEdit

yeaL:Gene

2013-10-09T23:59:38Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|yeaL}}{{Tab On|Gene|yeaL}}{{Tab|Gene Product(s)|yeaL}}{{Tab|Expression|yeaL}}{{Tab|Evolution|yeaL}}{{Tab|On One Page|yeaL}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="I46a9cef59e7c2" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''yeaL''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Systematic nomenclature
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK1787, b1789, JW1778''<ref name='LIB:Riley_2006'/>, JW1778''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14149.I46a9cef59e7c2&page=14149&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a9cef625f1b" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
40.36 minutes 
|
MG1655: 1872376..1872822 <gbrowseImage>
name=NC_000913:1872376..1872822
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6975 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|1871376|1873822|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|1872376|1872822|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6975 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 1851581..1852027 <gbrowseImage>
name=NC_012967:1851581..1852027
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|1851581|1852027|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1851581|1852027|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 1764435..1764881 <gbrowseImage>
name=NC_012759:1764435..1764881
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|1764435|1764881|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1764435|1764881|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 1876066..1876512 <gbrowseImage>
name=NC_007779:1876066..1876512
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|1875066|1877512|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|1876066|1876512|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 1962947..1963393 <gbrowseImage>
name=NC_010473:1962947..1963393
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|1962055|1964285|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1962055|1964285|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14149.Z46a9cef625f1b&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D46a9cef6cc6b3" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14149.D46a9cef6cc6b3&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9cef71be25" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''yeaL(del)'' (Keio:JW1778)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=107772 CGSC9491]<ref name='LIB:cgsc'/>
|

|-
|
''yeaL(del)''::kan
|
deletion
|

|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|D-Mannose]]
|
PMID:16095938
|

|

|-
|
''yeaL785(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:104384|CGSC:104384]]
|

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|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V4e04c82de5cf2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.14149.V4e04c82de5cf2&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9cef7c23f9" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW1778
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTTTGATGTCACTTTGCTGAT

Primer 2:CCtTGTTTCCCCACAATCAGCGA
|-
|
[[:Category:Kohara_Phage:9F2|9F2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=331 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7F2|7F2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=332 Genobase]
|
PMID:3038334
|-
|
[[yeaI:Gene|zea-225::Tn10]]
|
Linked marker
|
CAG18465 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39973 CGSC7388]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 92% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zdj-225::Tn10
|-
|
[[eda:Gene|eda-51::Tn10]]
|
Linked marker
|
CAG18486 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39983 CGSC7392]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 5% <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14149.U46a9cef7c23f9&page=14149&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9cef85ebaa" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:G6975
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG13498
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003562
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946307 GeneID:946307]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[EchoBASE]]
|
EchoBASE:EB3271
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0005954
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14149.M46a9cef85ebaa&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a6ec56e0e72" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14149.Y46a6ec56e0e72&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yea genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

PMID:6094504

2013-06-18T15:36:44Z

Wameza: Fill PMID: Page!

{{RightTOC}}


{| id="I51c07e8c4b506" class=" tableEdit PMID_info_table"

|-
!align=left |Citation
||
'''Fishel, RA and Kolodner, R''' (1984) Escherichia coli strains containing mutations in the structural gene for topoisomerase I are recombination deficient. ''J. Bacteriol.'' '''160''':1168-70
|-
!align=left |Abstract
||
Mutations in the gene encoding topoisomerase I of Escherichia coli were tested for their effect on plasmid recombination. Recombination was decreased 1,000-fold at 30 and 37 degrees C and occurred at approximately wild-type frequencies at 42 degrees C. The suppression of topA mutations at 42 degrees C did not appear to be a result of increased topoisomerase I activity at 42 degrees C.
|-
!align=left |Links
||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6094504 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC215837 PMC215837]

|-
!align=left |Keywords
||
DNA Topoisomerases, Type I/genetics; Escherichia coli/enzymology; Escherichia coli/genetics; Genes; Genes, Bacterial; Genotype; Mutation; Plasmids; Recombination, Genetic

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.183261.I51c07e8c4b506&page=183261&pagename={{FULLPAGENAMEE}}&type=1&template=PMID_info_table edit table] ||
|}


==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
<annotationlinks/>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==See also==

==References==
{{RefHelp}}
<references/>

PMID:6094504

2013-06-18T15:36:44Z

Wameza: New PMID: Page!

topA:Gene

2013-06-17T23:50:10Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|topA}}{{Tab On|Gene|topA}}{{Tab|Gene Product(s)|topA}}{{Tab|Expression|topA}}{{Tab|Evolution|topA}}{{Tab|On One Page|topA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="E46a9c3878f8b7" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''topA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Topoisomerase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK1268, b1274, JW1266, supX, asuA?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, asuA?''

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9c38815284" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
28.65 minutes 
|
MG1655: 1329072..1331669 <gbrowseImage>
name=NC_000913:1329072..1331669
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11013 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|1328072|1332669|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|1329072|1331669|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11013 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 1329420..1332017 <gbrowseImage>
name=NC_012967:1329420..1332017
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|1329420|1332017|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1329420|1332017|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 1219921..1222518 <gbrowseImage>
name=NC_012759:1219921..1222518
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|1219921|1222518|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1219921|1222518|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 1332762..1335359 <gbrowseImage>
name=AC_000091:1332762..1335359
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|1331762|1336359|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|1332762|1335359|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 1418468..1421065 <gbrowseImage>
name=NC_010473:1418468..1421065
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|1413274|1426259|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1413274|1426259|FASTA Dump}}

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9c388b6977" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
1329075
|
Edman degradation
|
PMID:3029379 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13113.I46a9c388b6977&page=13113&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="F46a9c38904430" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''topA66''
|

|

|

|

|
PMID:2539359
|
[[cgscmutation:72894|CGSC:72894]]
|

|-
|
''topA10''
|

|

|

|

|

|
[[cgscmutation:5048|CGSC:5048]]
|

|-
|
''topA75(del)''
|

|

|

|

|
PMID:15522872
|
[[cgscmutation:80891|CGSC:80891]]
|

|-
|
''topA(del)'' ''topB(del)''
|

|

|

|
chromosomal segregation defect is due to a defect in recombination, not decatenation
|
PMID:11493711
|

|

|-
|
SY791 ''top-10''
|
Point Mutation
|

|
Plasmid Recombination
|
Decrease in Plasmid recombination
|
PMID:6094504
|

|
See Figure 2 for experimental data.
|-
|
SY791 ''top-10''
|
Point Mutation
|

|
Supercoiling
|
Decrease in Super-coiling
|
PMID:6094504
|

|
See Figure 2 for experimental data.
|-
|
SY791 ''DE(topA-cysB) 700''
|
deletion
|

|
Plasmid Recombination
|
Decrease in Plasmid Recombination
|
PMID:6094504
|

|
See figure 2 for experimental data.
|-
|
SY791 ''DE(topA-cysB) 700''
|
deletion
|

|
Supercoiling
|
Decrease in Supercoiling
|
PMID:6094504
|

|
See figure 2 for experimental data.

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|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O4e04c4bfac09a" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.13113.O4e04c4bfac09a&page=13113&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9c389a60bd" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW1266
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGGTAAAGCTCTTGTCATCGT

Primer 2:CCTTTTTTTCCTTCAACCCATTT
|-
|
[[:Category:Kohara_Phage:4F1|4F1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=253 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:13F9|13F9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=254 Genobase]
|
PMID:3038334
|-
|
[[trpC:Gene|trpC83::Tn10]]
|
Linked marker
|
CAG18455 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39837 CGSC7371]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 67% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:trpB83::Tn10
|-
|
[[ycjM:Gene|zcj-233::Tn10]]
|
Linked marker
|
CAG12028 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39843 CGSC7373]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 19% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zci-233::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13113.U46a9c389a60bd&page=13113&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R46a9c38a3eb51" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG11013
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG11013
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945862 GeneID:945862]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120001002
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB1006
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0004275
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a6e103dc1e3" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13113.Z46a6e103dc1e3&page=13113&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:top genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

deaD:Gene

2013-06-07T19:13:05Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|deaD}}{{Tab On|Gene|deaD}}{{Tab|Gene Product(s)|deaD}}{{Tab|Expression|deaD}}{{Tab|Evolution|deaD}}{{Tab|On One Page|deaD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="X46a9ef0fa9dab" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''deaD''
|-
!align=left {{table_heading_style}} |Mnemonic
||
DEAD motif
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3150, b3162, JW5531, mssB, rhlD''<ref name='LIB:Riley_2006'/>, csdA, rhlD''

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9ef1035cad" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.21 minutes 
|
MG1655: 3305882..3303993 <gbrowseImage>
name=NC_000913:3303993..3305882
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10215 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3302993|3306882|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3303993|3305882|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10215 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3243094..3241205 <gbrowseImage>
name=NC_012967:3241205..3243094
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3241205|3243094|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3241205|3243094|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3191141..3193030 <gbrowseImage>
name=NC_012759:3191141..3193030
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3191141|3193030|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3191141|3193030|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3307715..3305826 <gbrowseImage>
name=AC_000091:3305826..3307715
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3304826|3308715|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3305826|3307715|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3403627..3401738 <gbrowseImage>
name=NC_010473:3401738..3403627
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3397960|3407405|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3397960|3407405|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16875.Y46a9ef1035cad&page=16875&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9ef10e8b71" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3303996
|
Edman degradation
|
PMID:8552679 PMID:10216955 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16875.S46a9ef10e8b71&page=16875&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46a9ef113c896" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
deaDE157Q
|

|
E157Q
|

|
Abolishes ATPase activity, drastically reduces helicase activity. In vivo acts as a dominant negative mutation in the presence of the wild-type protein at low temperature
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A9P6 UniProt:P0A9P6]
|-
|
''deaD(del)'' (Keio:JW5531)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=109728 CGSC11447]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0010392 deaD::Tn5KAN-I-SceI] (FB21048)
|
Insertion at nt 1255 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21048]
|
does not contain [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0010392 deaD::Tn5KAN-I-SceI] (FB21049)
|
Insertion at nt 1255 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21049]
|
contains [[pKD46]]
|-
|
''deaD774(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100566|CGSC:100566]]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A4e04b9aca6c99" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16875.A4e04b9aca6c99&page=16875&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D46a9ef11ef425" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5531
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGCTGAATTCGAAACCACTTT

Primer 2:CCtGCATCACCACCGAAACGACG
|-
|
[[:Category:Kohara_Phage:13A9|13A9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=518 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:E4G11S|E4G11S]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=519 Genobase]
|
PMID:3038334
|-
|
[[aer:Gene|aer-3075::Tn10]]
|
Linked marker
|
CAG12152 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38761 CGSC7438]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgh-3075::Tn10, zgj-3075::Tn10
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 35% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16875.D46a9ef11ef425&page=16875&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9ef1295c01" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10215
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10215
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947674 GeneID:947674]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000209
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0211
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0010392
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R46a70a9eef2d1" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16875.R46a70a9eef2d1&page=16875&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dea genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

rnhA:Gene

2013-05-30T19:06:05Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rnhA}}{{Tab On|Gene|rnhA}}{{Tab|Gene Product(s)|rnhA}}{{Tab|Expression|rnhA}}{{Tab|Evolution|rnhA}}{{Tab|On One Page|rnhA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="E46a9aafc8cc8c" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''rnhA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
RNase H
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0214, b0214, JW0204, cer, dasF, herA, rnh, sdrA, sin, G306''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.E46a9aafc8cc8c&page=11005&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9aafd129b7" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
5.08 minutes 
|
MG1655: 236002..235535 <gbrowseImage>
name=NC_000913:235535..236002
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10860 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|234535|237002|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|235535|236002|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10860 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 238926..238459 <gbrowseImage>
name=NC_012967:238459..238926
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|238459|238926|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|238459|238926|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 235534..236001 <gbrowseImage>
name=NC_012759:235534..236001
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|235534|236001|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|235534|236001|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 236002..235535 <gbrowseImage>
name=AC_000091:235535..236002
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|234535|237002|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|235535|236002|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 210106..209639 <gbrowseImage>
name=NC_010473:209639..210106
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|208705|211040|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|208705|211040|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.L46a9aafd129b7&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9aafdaff04" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
235535
|
Edman degradation
|
PMID:2171503 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.C46a9aafdaff04&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9aafdf089d" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''rnhA(del)'' (Keio:JW0204)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]

[http://cgsc2.biology.yale.edu/Strain.php?ID=106725 CGSC8444]<ref name='LIB:cgsc'/>
|

|-
|
rnhAE48Q
|

|
E48Q
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD70N
|

|
D70N
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAH124A
|

|
H124A
|

|
Reduces activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAN130A
|

|
N130A
|

|
Reduces activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD134A
|

|
D134A
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD134H,N
|

|
D134H,N
|

|
Slight decrease of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD10N
|

|
D10N
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
''rnhA1''
|

|

|

|

|

|
[[cgscmutation:8712|CGSC:8712]]
|

|-
|
''rnhA733(del)::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:102750|CGSC:102750]]
|

|-
|
''rnh-1 dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-59 dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-91 (amber) dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-224 (UGA) dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-339::cat dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-1 recB270''
|

|

|
RNase H activity
|
Decreased activity of RNAse H.
|
PMID:1650909
|

|
The mutation conferred a decrease in RNase H activity by 10 percent. See table 3.
|-
|
''rnh-59 recB270''
|

|

|
RNase H activity
|
Decreased activity of RNAse H.
|
PMID:1650909
|

|
The mutation conferred a decrease in RNase H activity. See table 3.
|-
|
''rnh-91 recB270''
|

|

|
RNase H activity
|
Decreased activity of RNAse H.
|
PMID:1650909
|

|
The mutation conferred a decrease in RNase H activity. See table 3.
|-
|
''rnh-224 recB270''
|

|

|
RNase H activity
|
Decreased activity of RNAse H.
|
PMID:1650909
|

|
The mutation conferred a decrease in RNase H activity. See table 3.
|-
|
''rnh-339::cat recB270''
|

|

|
RNase H activity
|
Decreased activity of RNAse H.
|
PMID:1650909
|

|
The mutation conferred a decrease in RNase H activity. See table 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.S46a9aafdf089d&page=11005&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H4e04c2b324e92" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11005.H4e04c2b324e92&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9aafe9933d" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0204
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCTTAAACAGGTAGAAATTTT

Primer 2:CCAACTTCAACTTGGTAGCCTGT
|-
|
[[:Category:Kohara_Phage:7D5|7D5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=125 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:4A11|4A11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=126 Genobase]
|
PMID:3038334
|-
|
[[yafC:Gene|yafC502::Tn10]]
|
Linked marker
|
CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 89% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zae-502::Tn10
|-
|
[[proA:Gene|proA81::Tn10]]
|
Linked marker
|
CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 40% <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.W46a9aafe9933d&page=11005&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E46a9aaff2ed84" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10860
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10860
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946955 GeneID:946955]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000851
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0853
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0000717
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.E46a9aaff2ed84&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a67835570cd" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.Z46a67835570cd&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:rnh genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

rnhA:Gene

2013-05-30T18:04:04Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rnhA}}{{Tab On|Gene|rnhA}}{{Tab|Gene Product(s)|rnhA}}{{Tab|Expression|rnhA}}{{Tab|Evolution|rnhA}}{{Tab|On One Page|rnhA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="E46a9aafc8cc8c" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''rnhA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
RNase H
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0214, b0214, JW0204, cer, dasF, herA, rnh, sdrA, sin, G306''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.E46a9aafc8cc8c&page=11005&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9aafd129b7" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
5.08 minutes 
|
MG1655: 236002..235535 <gbrowseImage>
name=NC_000913:235535..236002
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10860 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|234535|237002|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|235535|236002|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10860 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 238926..238459 <gbrowseImage>
name=NC_012967:238459..238926
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|238459|238926|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|238459|238926|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 235534..236001 <gbrowseImage>
name=NC_012759:235534..236001
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|235534|236001|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|235534|236001|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 236002..235535 <gbrowseImage>
name=AC_000091:235535..236002
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|234535|237002|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|235535|236002|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 210106..209639 <gbrowseImage>
name=NC_010473:209639..210106
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|208705|211040|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|208705|211040|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.L46a9aafd129b7&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9aafdaff04" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
235535
|
Edman degradation
|
PMID:2171503 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.C46a9aafdaff04&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9aafdf089d" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''rnhA(del)'' (Keio:JW0204)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]

[http://cgsc2.biology.yale.edu/Strain.php?ID=106725 CGSC8444]<ref name='LIB:cgsc'/>
|

|-
|
rnhAE48Q
|

|
E48Q
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD70N
|

|
D70N
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAH124A
|

|
H124A
|

|
Reduces activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAN130A
|

|
N130A
|

|
Reduces activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD134A
|

|
D134A
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD134H,N
|

|
D134H,N
|

|
Slight decrease of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD10N
|

|
D10N
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
''rnhA1''
|

|

|

|

|

|
[[cgscmutation:8712|CGSC:8712]]
|

|-
|
''rnhA733(del)::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:102750|CGSC:102750]]
|

|-
|
''rnh-1 dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-59 dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-91 (amber) dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-224 (UGA) dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.
|-
|
''rnh-339::cat dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|
See table 2.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.S46a9aafdf089d&page=11005&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H4e04c2b324e92" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11005.H4e04c2b324e92&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9aafe9933d" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0204
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCTTAAACAGGTAGAAATTTT

Primer 2:CCAACTTCAACTTGGTAGCCTGT
|-
|
[[:Category:Kohara_Phage:7D5|7D5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=125 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:4A11|4A11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=126 Genobase]
|
PMID:3038334
|-
|
[[yafC:Gene|yafC502::Tn10]]
|
Linked marker
|
CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 89% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zae-502::Tn10
|-
|
[[proA:Gene|proA81::Tn10]]
|
Linked marker
|
CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 40% <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.W46a9aafe9933d&page=11005&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E46a9aaff2ed84" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10860
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10860
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946955 GeneID:946955]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000851
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0853
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0000717
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.E46a9aaff2ed84&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a67835570cd" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.Z46a67835570cd&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:rnh genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

rnhA:Gene

2013-05-30T17:39:32Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rnhA}}{{Tab On|Gene|rnhA}}{{Tab|Gene Product(s)|rnhA}}{{Tab|Expression|rnhA}}{{Tab|Evolution|rnhA}}{{Tab|On One Page|rnhA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="E46a9aafc8cc8c" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''rnhA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
RNase H
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0214, b0214, JW0204, cer, dasF, herA, rnh, sdrA, sin, G306''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.E46a9aafc8cc8c&page=11005&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9aafd129b7" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
5.08 minutes 
|
MG1655: 236002..235535 <gbrowseImage>
name=NC_000913:235535..236002
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10860 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|234535|237002|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|235535|236002|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10860 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 238926..238459 <gbrowseImage>
name=NC_012967:238459..238926
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|238459|238926|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|238459|238926|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 235534..236001 <gbrowseImage>
name=NC_012759:235534..236001
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|235534|236001|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|235534|236001|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 236002..235535 <gbrowseImage>
name=AC_000091:235535..236002
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|234535|237002|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|235535|236002|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 210106..209639 <gbrowseImage>
name=NC_010473:209639..210106
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|208705|211040|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|208705|211040|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.L46a9aafd129b7&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9aafdaff04" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
235535
|
Edman degradation
|
PMID:2171503 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.C46a9aafdaff04&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9aafdf089d" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''rnhA(del)'' (Keio:JW0204)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]

[http://cgsc2.biology.yale.edu/Strain.php?ID=106725 CGSC8444]<ref name='LIB:cgsc'/>
|

|-
|
rnhAE48Q
|

|
E48Q
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD70N
|

|
D70N
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAH124A
|

|
H124A
|

|
Reduces activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAN130A
|

|
N130A
|

|
Reduces activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD134A
|

|
D134A
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD134H,N
|

|
D134H,N
|

|
Slight decrease of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
rnhAD10N
|

|
D10N
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A7Y4 UniProt:P0A7Y4]
|-
|
''rnhA1''
|

|

|

|

|

|
[[cgscmutation:8712|CGSC:8712]]
|

|-
|
''rnhA733(del)::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:102750|CGSC:102750]]
|

|-
|
''rnh-1 dnaA508''
|
insertion
|

|
Origin Indepedence
|
The mutation caused differing origins or replication.
|
PMID:1650909
|
[http://cgsc.biology.yale.edu/Strain.php?ID=4509 CGSC1157]<ref name='LIB:cgsc'/>
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.S46a9aafdf089d&page=11005&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H4e04c2b324e92" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11005.H4e04c2b324e92&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9aafe9933d" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0204
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCTTAAACAGGTAGAAATTTT

Primer 2:CCAACTTCAACTTGGTAGCCTGT
|-
|
[[:Category:Kohara_Phage:7D5|7D5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=125 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:4A11|4A11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=126 Genobase]
|
PMID:3038334
|-
|
[[yafC:Gene|yafC502::Tn10]]
|
Linked marker
|
CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 89% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zae-502::Tn10
|-
|
[[proA:Gene|proA81::Tn10]]
|
Linked marker
|
CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 40% <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.W46a9aafe9933d&page=11005&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E46a9aaff2ed84" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10860
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10860
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946955 GeneID:946955]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000851
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0853
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0000717
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.E46a9aaff2ed84&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a67835570cd" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11005.Z46a67835570cd&page=11005&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:rnh genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dsbB:Gene

2013-05-17T20:39:39Z

Wameza: Table edited by Wameza via TableEdit

dsbA:Gene

2013-05-17T20:34:50Z

Wameza: Table edited by Wameza via TableEdit

dsbC:Gene

2013-05-17T18:39:02Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dsbC}}{{Tab On|Gene|dsbC}}{{Tab|Gene Product(s)|dsbC}}{{Tab|Expression|dsbC}}{{Tab|Evolution|dsbC}}{{Tab|On One Page|dsbC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="N46a9e8bb968c6" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dsbC''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Disulfide bond
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2888, b2893, JW2861, xprA''<ref name='LIB:Riley_2006'/>, xprA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.N46a9e8bb968c6&page=16351&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="U46a9e8bc21bef" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
65.44 minutes 
|
MG1655: 3036844..3036134 <gbrowseImage>
name=NC_000913:3036134..3036844
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11070 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3035134|3037844|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3036134|3036844|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11070 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2924575..2923865 <gbrowseImage>
name=NC_012967:2923865..2924575
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2923865|2924575|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2923865|2924575|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2923282..2923992 <gbrowseImage>
name=NC_012759:2923282..2923992
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2923282|2923992|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2923282|2923992|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3037478..3036768 <gbrowseImage>
name=AC_000091:3036768..3037478
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3035768|3038478|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3036768|3037478|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3130714..3130004 <gbrowseImage>
name=NC_010473:3130004..3130714
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3128584|3132134|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3128584|3132134|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.U46a9e8bc21bef&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="P46a9e8bcd1efa" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3036137
|
Edman degradation
|
PMID:9298646 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.P46a9e8bcd1efa&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9e8bd24d48" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''dsbC(del)'' (Keio:JW2861)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=106593 CGSC8322]<ref name='LIB:cgsc'/>
|

|-
|
dsbCC118T,A
|

|
C118T,A
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC121A
|

|
C121A
|

|
Partial loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC121V
|

|
C121V
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC161S
|

|
C161S
|

|
Destabilization of protein
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC183L
|

|
C183L
|

|
Destabilization of protein
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
''dsbC3::Cm''
|

|

|

|

|
PMID:8917542 PMID:9352906
|
[[cgscmutation:65870|CGSC:65870]]
|

|-
|
''dsbC744(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100652|CGSC:100652]]
|

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Sensitivity to
|
Dithiothreitol
|
PMID:8168498
|

|
The mutation conferred an increase toward Dithiothreitol

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Alkaline phosphate activity
|
Decreased alkaline phosphatase activity
|
PMID:8168498
|

|
The mutation conferred a reduction of alkaline phosphatase activity.

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Sensitivity to
|
Benzylpenicillin sensitivity
|
PMID:8168498
|

|
The mutation caused hypersensitivity toward Benzylpenicillin
|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Growth Phenotype
|
Decreased Growth
|
PMID:8168498
|

|
The mutation caused a reduction of growth on minimal medium.
|-
|
''dsbC13''::Tn''10''
|
Insertion
|

|
Disulfide Bond Formation
|
Defective Disulfide Bond Formation
|
PMID:8168498
|

|
Defective Disulfide Bond formation. See figure 2 for experimental results.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.K46a9e8bd24d48&page=16351&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="H4e04ba1ac0c07" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16351.H4e04ba1ac0c07&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="B46a9e8bdd533d" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2861
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAAGAAAGGTTTTATGTTGTT

Primer 2:CCTTTACCGCTGGTCATTTTTTG
|-
|
[[:Category:Kohara_Phage:22H4|22H4]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=468 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:5E11|5E11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=469 Genobase]
|
PMID:3038334
|-
|
[[recD:Gene|recD1901::Tn10]]
|
Linked marker
|
CAG12135 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40106 CGSC7429]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[speA:Gene|speA210::Tn10]]
|
Linked marker
|
CAG12168 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40110 CGSC7431]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 10% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgd-210::Tn10, zgf-210::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.B46a9e8bdd533d&page=16351&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="A46a9e8be79ec4" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11070 ECOCYC:EG11070]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11070 EcoGene:EG11070]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947363 GeneID:947363]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.A46a9e8be79ec4&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="J46a704da5ed0c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.J46a704da5ed0c&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dsb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dsbC:Gene

2013-05-17T18:11:26Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dsbC}}{{Tab On|Gene|dsbC}}{{Tab|Gene Product(s)|dsbC}}{{Tab|Expression|dsbC}}{{Tab|Evolution|dsbC}}{{Tab|On One Page|dsbC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="N46a9e8bb968c6" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dsbC''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Disulfide bond
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2888, b2893, JW2861, xprA''<ref name='LIB:Riley_2006'/>, xprA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.N46a9e8bb968c6&page=16351&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="U46a9e8bc21bef" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
65.44 minutes 
|
MG1655: 3036844..3036134 <gbrowseImage>
name=NC_000913:3036134..3036844
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11070 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3035134|3037844|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3036134|3036844|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11070 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2924575..2923865 <gbrowseImage>
name=NC_012967:2923865..2924575
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2923865|2924575|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2923865|2924575|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2923282..2923992 <gbrowseImage>
name=NC_012759:2923282..2923992
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2923282|2923992|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2923282|2923992|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3037478..3036768 <gbrowseImage>
name=AC_000091:3036768..3037478
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3035768|3038478|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3036768|3037478|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3130714..3130004 <gbrowseImage>
name=NC_010473:3130004..3130714
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3128584|3132134|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3128584|3132134|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.U46a9e8bc21bef&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="P46a9e8bcd1efa" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3036137
|
Edman degradation
|
PMID:9298646 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.P46a9e8bcd1efa&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9e8bd24d48" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''dsbC(del)'' (Keio:JW2861)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=106593 CGSC8322]<ref name='LIB:cgsc'/>
|

|-
|
dsbCC118T,A
|

|
C118T,A
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC121A
|

|
C121A
|

|
Partial loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC121V
|

|
C121V
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC161S
|

|
C161S
|

|
Destabilization of protein
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC183L
|

|
C183L
|

|
Destabilization of protein
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
''dsbC3::Cm''
|

|

|

|

|
PMID:8917542 PMID:9352906
|
[[cgscmutation:65870|CGSC:65870]]
|

|-
|
''dsbC744(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100652|CGSC:100652]]
|

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Sensitivity to
|
Dithiothreitol
|
PMID:8168498
|

|
The mutation conferred an increase toward Dithiothreitol

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Alkaline phosphate activity
|
Decreased alkaline phosphatase activity
|
PMID:8168498
|

|
The mutation conferred a reduction of alkaline phosphatase activity.

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Sensitivity to
|
Benzylpenicillin sensitivity
|
PMID:8168498
|

|
The mutation caused hypersensitivity toward Benzylpenicillin

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.K46a9e8bd24d48&page=16351&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="H4e04ba1ac0c07" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16351.H4e04ba1ac0c07&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="B46a9e8bdd533d" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2861
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAAGAAAGGTTTTATGTTGTT

Primer 2:CCTTTACCGCTGGTCATTTTTTG
|-
|
[[:Category:Kohara_Phage:22H4|22H4]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=468 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:5E11|5E11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=469 Genobase]
|
PMID:3038334
|-
|
[[recD:Gene|recD1901::Tn10]]
|
Linked marker
|
CAG12135 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40106 CGSC7429]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[speA:Gene|speA210::Tn10]]
|
Linked marker
|
CAG12168 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40110 CGSC7431]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 10% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgd-210::Tn10, zgf-210::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.B46a9e8bdd533d&page=16351&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="A46a9e8be79ec4" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11070 ECOCYC:EG11070]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11070 EcoGene:EG11070]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947363 GeneID:947363]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.A46a9e8be79ec4&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="J46a704da5ed0c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.J46a704da5ed0c&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dsb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dsbC:Gene

2013-05-16T23:22:37Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dsbC}}{{Tab On|Gene|dsbC}}{{Tab|Gene Product(s)|dsbC}}{{Tab|Expression|dsbC}}{{Tab|Evolution|dsbC}}{{Tab|On One Page|dsbC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="N46a9e8bb968c6" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dsbC''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Disulfide bond
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2888, b2893, JW2861, xprA''<ref name='LIB:Riley_2006'/>, xprA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.N46a9e8bb968c6&page=16351&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="U46a9e8bc21bef" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
65.44 minutes 
|
MG1655: 3036844..3036134 <gbrowseImage>
name=NC_000913:3036134..3036844
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11070 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3035134|3037844|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3036134|3036844|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11070 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2924575..2923865 <gbrowseImage>
name=NC_012967:2923865..2924575
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2923865|2924575|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2923865|2924575|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2923282..2923992 <gbrowseImage>
name=NC_012759:2923282..2923992
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2923282|2923992|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2923282|2923992|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3037478..3036768 <gbrowseImage>
name=AC_000091:3036768..3037478
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3035768|3038478|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3036768|3037478|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3130714..3130004 <gbrowseImage>
name=NC_010473:3130004..3130714
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3128584|3132134|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3128584|3132134|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.U46a9e8bc21bef&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="P46a9e8bcd1efa" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3036137
|
Edman degradation
|
PMID:9298646 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.P46a9e8bcd1efa&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9e8bd24d48" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''dsbC(del)'' (Keio:JW2861)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=106593 CGSC8322]<ref name='LIB:cgsc'/>
|

|-
|
dsbCC118T,A
|

|
C118T,A
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC121A
|

|
C121A
|

|
Partial loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC121V
|

|
C121V
|

|
Loss of activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC161S
|

|
C161S
|

|
Destabilization of protein
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
dsbCC183L
|

|
C183L
|

|
Destabilization of protein
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AEG6 UniProt:P0AEG6]
|-
|
''dsbC3::Cm''
|

|

|

|

|
PMID:8917542 PMID:9352906
|
[[cgscmutation:65870|CGSC:65870]]
|

|-
|
''dsbC744(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100652|CGSC:100652]]
|

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Sensitivity to
|
Dithiothreitol
|
PMID:8168498
|

|
The mutation conferred an increase toward Dithiothreitol

|-
|
''dsbC''::Tn''10''
|
Insertion
|

|
Alkaline phosphate activity
|
Decreased alkaline phosphatase activity
|
PMID:8168498
|

|
The mutation conferred a reduction of alkaline phosphatase activity.

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|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="H4e04ba1ac0c07" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16351.H4e04ba1ac0c07&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="B46a9e8bdd533d" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2861
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAAGAAAGGTTTTATGTTGTT

Primer 2:CCTTTACCGCTGGTCATTTTTTG
|-
|
[[:Category:Kohara_Phage:22H4|22H4]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=468 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:5E11|5E11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=469 Genobase]
|
PMID:3038334
|-
|
[[recD:Gene|recD1901::Tn10]]
|
Linked marker
|
CAG12135 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40106 CGSC7429]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[speA:Gene|speA210::Tn10]]
|
Linked marker
|
CAG12168 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40110 CGSC7431]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 10% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgd-210::Tn10, zgf-210::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.B46a9e8bdd533d&page=16351&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="A46a9e8be79ec4" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11070 ECOCYC:EG11070]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11070 EcoGene:EG11070]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947363 GeneID:947363]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.A46a9e8be79ec4&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="J46a704da5ed0c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16351.J46a704da5ed0c&page=16351&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dsb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dsbC:Gene

2013-05-16T23:18:38Z

Wameza: Table edited by Wameza via TableEdit

PMID:3315848

2013-05-01T22:57:07Z

Wameza:

{{RightTOC}}

 '''Grossman, AD, Straus, DB, Walter, WA and Gross, CA''' (1987) Sigma 32 synthesis can regulate the synthesis of heat shock proteins in Escherichia coli.''Genes Dev.'' '''1''':179-84

{|{{Prettytable}} align = 'center' width= '70%'
|-
|{{TableHeadingColor}} |'''Abstract''' || The Escherichia coli rpoH (htpR) gene product, sigma 32, is required for the normal expression of heat shock genes and for the heat shock response. We present experiments indicating a direct role for sigma 32 in controlling the heat shock response. Both the induction and decline in the synthesis of heat shock proteins can be controlled by changes in the rate of synthesis of sigma 32. Specifically, we show that: (1) sigma 32 is an unstable protein, degraded with a half-life of approximately 4 min; (2) increasing the rate of synthesis of sigma 32, by inducing expression from a Plac or Ptac-rpoH fusion, is sufficient to increase the rate of synthesis of heat shock proteins; (3) during the shut-off phase of the heat shock response synthesis of sigma 32 is repressed post-transcriptionally, and the dnaK756 mutation, which causes a defect in the shut-off phase, prevents the post-transcriptional repression of synthesis of sigma 32. These results serve as a basis for understanding the role of DnaK in the heat shock response, the regulation of sigma 32 synthesis, and the role of sigma 32 in controlling transcription of heat shock genes.
</noinclude>
|-
|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3315848 PubMed]
|}

==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==


{| id="M47f71604bef29" class=" tableEdit GO_table_reference"
|- {{table heading style}}
!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.M47f71604bef29&page=0&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_reference edit table] || || || || || || || ||
|}


==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==References==
{{RefHelp}}
<references/>

PMID:3315848

2013-05-01T22:56:47Z

Wameza: Blanked the page

rfaB:Gene

2013-04-26T21:33:19Z

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oxyR:Gene

2013-04-26T17:26:58Z

Wameza: Table edited by Wameza via TableEdit

hcr:Gene

2013-04-18T18:24:30Z

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parC:Gene

2013-04-15T17:22:05Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|parC}}{{Tab On|Gene|parC}}{{Tab|Gene Product(s)|parC}}{{Tab|Expression|parC}}{{Tab|Evolution|parC}}{{Tab|On One Page|parC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| {{Prettytable}} id="C46a9eba98290f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''parC''
|-
!align=left {{table_heading_style}} |Mnemonic
||
partitioning of the nucleoid
Partition
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3010, b3019, JW2987''<ref name='LIB:Riley_2006'/>, JW2987''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.C46a9eba98290f&page=16595&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="T46a9ebaa0dd6c" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
68.15 minutes 
|
MG1655: 3163995..3161737 <gbrowseImage>
name=NC_000913:3161737..3163995
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10686 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3160737|3164995|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3161737|3163995|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10686 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3100145..3097887 <gbrowseImage>
name=NC_012967:3097887..3100145
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3097887|3100145|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3097887|3100145|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3048885..3051143 <gbrowseImage>
name=NC_012759:3048885..3051143
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3048885|3051143|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3048885|3051143|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3164629..3162371 <gbrowseImage>
name=AC_000091:3162371..3164629
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3161371|3165629|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3162371|3164629|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3261740..3259482 <gbrowseImage>
name=NC_010473:3259482..3261740
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3254966|3266256|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3254966|3266256|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.T46a9ebaa0dd6c&page=16595&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="L46a9ebaabfe85" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.L46a9ebaabfe85&page=16595&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9ebab13e41" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''parC1215''
|
G2199A
|
G703D
|
Growth Phenotype
|
*ts @ 42
*Chromosome partitioning phenotype
*Filamentation
|
PMID:2170028, PMID:2842295
|

|
actual nucleotide mapping was referenced in <ref name='PMID:2170028'/>

|-
|
''parC10''
|

|
Y120H
|

|
DNA nicking independent of ATP hydrolysis
|
PMID:9077455
|

|

|-
|
''parCL80''
|

|
S80L
|
Resistant to
|
Quinolone resistance
|
PMID:8524852
|

|
The mutation conferred increased resistance toward quinolones, specifically norfloxcin. See figure 3.
chEBI:23765
|-
|
''parCL80'' ''gyrAr''
|

|
parC S80L
gyrA S83L

|
Resistant to
|
quinolone resistance
|
PMID:8524852
|

|
The double mutation conferred a 6 fold increase of quinolone resistance compared to the mutation with only the ''gyrAR'' mutation. See figure 4 for experimental results.
chEBI:23765

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===
*The partitioning defect comes from the inability of these cells to partition the nucleoids into daughter cells. This results in filamentous cells with a cluster of nucleoid at the center and subsequent DNA-free cells.

*The Keio collection<ref name='PMID:16738554'/> lists a deletion of ''parC'', which is an essential gene. There is a duplication of the ''parC'' region.<ref name='PMID:20029369'/>.

*Suppressors of the ''parC1215'' mutation when expressed at high-copy<ref name='PMID:12509418'/>:
**''topB''
**''dnaN'' (β subunit of the DNA polymerase holoenzyme)
**''spcA'' (suppressor of ''parC'' A- will be renamed ''setB'')

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="A4e04c0c58fc97" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16595.A4e04c0c58fc97&page=16595&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="T46a9ebabc5e3a" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2987
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGATATGGCAGAGCGCCT

Primer 2:CCtTCTTCGCTATCACCGCTGCT
|-
|
[[:Category:Kohara_Phage:6H4|6H4]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=505 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:17B2|17B2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=506 Genobase]
|
PMID:3038334
|-
|
[[metC:Gene|metC162::Tn10]]
|
Linked marker
|
CAG18475 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38931 CGSC7435]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 67% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[tolC:Gene|tolC210::Tn10]]
|
Linked marker
|
CAG12184 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38758 CGSC7437]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 56% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
plexBA-parEC
|
Plasmid Clone
|

|
*IPTG-inducible Topo IV expression plasmid<ref name='PMID:10660569'/>
|-
|
pLC4-14
|
Plasmid Clone
|
plasmid from the Clarke-Carbon collection
|
PMID:2842295

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.T46a9ebabc5e3a&page=16595&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46a9ebac6bc4d" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10686 ECOCYC:EG10686]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10686 EcoGene:EG10686]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947499 GeneID:947499]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.P46a9ebac6bc4d&page=16595&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="M46a9ebb003b46" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.M46a9ebb003b46&page=16595&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:par genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

lacZ:Gene

2013-04-12T22:40:31Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|lacZ}}{{Tab On|Gene|lacZ}}{{Tab|Gene Product(s)|lacZ}}{{Tab|Expression|lacZ}}{{Tab|Evolution|lacZ}}{{Tab|On One Page|lacZ}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="K46a9adc3a7fd8" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''lacZ''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Lactose
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0341, b0344, JW0335''<ref name='LIB:Riley_2006'/>, JW0335''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11259.K46a9adc3a7fd8&page=11259&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="K46a9adc42cf2d" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
7.81 minutes 
|
MG1655: 365529..362455 <gbrowseImage>
name=NC_000913:362455..365529
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10527 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|361455|366529|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|362455|365529|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10527 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 338861..335787 <gbrowseImage>
name=NC_012967:335787..338861
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|335787|338861|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|335787|338861|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 4175805..4179047 <gbrowseImage>
name=NC_012759:4175805..4179047
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|4175805|4179047|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|4175805|4179047|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 365529..362455 <gbrowseImage>
name=AC_000091:362455..365529
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|361455|366529|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|362455|365529|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11259.K46a9adc42cf2d&page=11259&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="J46a9adc4cb867" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
362458
|
Edman degradation
|
PMID:97295 PMID:97298 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11259.J46a9adc4cb867&page=11259&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9adc5192aa" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
lacZD202F
|

|
D202F
|

|
Obliterates all binding and catalysis
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZD202E,N
|

|
D202E,N
|

|
Causes a significant decrease in binding affinity in the absence of monovalent cations or in the presence of potassium ions, but only a moderate decrease in the presence of sodium ions
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZW1000F,G,L,T
|

|
W1000F,G,L,T
|

|
Decreases affinity for substrate
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZF602A
|

|
F602A
|

|
Decreases the stability of the loop 794-804
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZG795A
|

|
G795A
|

|
It forces the apoenzyme to adopt the closed rather than the open conformation. Reduces the binding affinity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZE798A,L
|

|
E798A,L
|

|
The catalytic efficiency is not increased, when the sodium concentration increases
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZE798D,Q
|

|
E798D,Q
|

|
Small increase of the catalytic efficiency, when the sodium concentration increases
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZH541E,F,N
|

|
H541E,F,N
|

|
Poorly reactive with galactosyl substrates. Less stable to heat than wild-type
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZE538Q
|

|
E538Q
|

|
10000-fold decrease in the beta- galactosidase activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZE462H
|

|
E462H
|

|
Slowly inactivates galactosidase activity by reducing the binding of magnesium. It increases binding specificity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZH358D,F,L,N
|

|
H358D,F,L,N
|

|
Less stable to heat than wild-type. Causes significant destabilizations of the first transition state
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
lacZH392E,F,K
|

|
H392E,F,K
|

|
Essentially inactive unless very rapid purification. Causes very large destabilizations of the transition state
|

|

|
seeded from [http://www.uniprot.org/uniprot/P00722 UniProt:P00722]
|-
|
''lacZ4''
|

|

|

|

|

|
[[cgscmutation:4649|CGSC:4649]]
|

|-
|
''lacZ43''(Fs)
|

|

|

|

|

|
[[cgscmutation:4545|CGSC:4545]]
|
frameshift mutation
|-
|
''lacZ53''(Am)
|

|

|

|

|

|
[[cgscmutation:4692|CGSC:4692]]
|
amber (UAG) mutation
|-
|
''lacZ36''
|

|

|

|

|

|
[[cgscmutation:5084|CGSC:5084]]
|

|-
|
''lacZ125''(Am)
|

|

|

|

|
PMID:5327654
|
[[cgscmutation:5303|CGSC:5303]]
|
amber (UAG) mutation
|-
|
''lacZ73''
|

|

|

|

|

|
[[cgscmutation:5701|CGSC:5701]]
|

|-
|
''lacZ46''
|

|

|

|

|

|
[[cgscmutation:5741|CGSC:5741]]
|

|-
|
''lacZ827''(UGA)
|

|

|

|

|

|
[[cgscmutation:5781|CGSC:5781]]
|
opal (UGA) mutation
|-
|
''lacZ82''(Am)
|

|

|

|

|

|
[[cgscmutation:5996|CGSC:5996]]
|
amber (UAG) mutation
|-
|
''lacZ39(del)''
|

|

|

|

|

|
[[cgscmutation:6051|CGSC:6051]]
|

|-
|
''lacZ13''(Oc)
|

|

|

|

|

|
[[cgscmutation:6357|CGSC:6357]]
|
ochre (UAA) mutation
|-
|
''lacZ90''(Oc)
|

|

|

|

|
PMID:6790520 PMID:5327654
|
[[cgscmutation:6678|CGSC:6678]]
|
ochre (UAA) mutation
|-
|
''lacZ625''(Am)
|

|

|

|

|
PMID:5327654
|
[[cgscmutation:6682|CGSC:6682]]
|
amber (UAG) mutation
|-
|
''lacZ118''(Oc)
|

|

|

|

|
PMID:5327654 PMID:412841 PMID:4876923
|
[[cgscmutation:6685|CGSC:6685]]
|
ochre (UAA) mutation
|-
|
''lacZ659''(Oc)
|

|

|

|

|
PMID:5327654
|
[[cgscmutation:6687|CGSC:6687]]
|
ochre (UAA) mutation
|-
|
''lacZ404''(Oc)
|

|

|

|

|
PMID:5327654
|
[[cgscmutation:6690|CGSC:6690]]
|
ochre (UAA) mutation
|-
|
''lacZ521''(UGA)
|

|

|

|

|
PMID:4915862
|
[[cgscmutation:6930|CGSC:6930]]
|
opal (UGA) mutation
|-
|
''lacZ813''(UGA)
|

|

|

|

|
PMID:4915862
|
[[cgscmutation:6935|CGSC:6935]]
|
opal (UGA) mutation
|-
|
''lacZ105''(Am)
|

|

|

|

|

|
[[cgscmutation:7341|CGSC:7341]]
|
amber (UAG) mutation
|-
|
''lacZ178''
|

|

|

|

|

|
[[cgscmutation:7401|CGSC:7401]]
|

|-
|
''lacZ281''(Am)
|

|

|

|

|

|
[[cgscmutation:7951|CGSC:7951]]
|
amber (UAG) mutation
|-
|
''lacZ57(del)''
|

|

|

|

|

|
[[cgscmutation:7985|CGSC:7985]]
|

|-
|
''lacZ62''
|

|

|

|

|

|
[[cgscmutation:8000|CGSC:8000]]
|

|-
|
''lacZ608''(Am)
|

|

|

|

|
PMID:5327654 PMID:4915862
|
[[cgscmutation:8396|CGSC:8396]]
|
amber (UAG) mutation
|-
|
''lacZ84''
|

|

|

|

|

|
[[cgscmutation:8606|CGSC:8606]]
|

|-
|
''lacZ75''(Fs)
|

|

|

|

|

|
[[cgscmutation:8609|CGSC:8609]]
|
frameshift mutation
|-
|
''lacZ482''(Am)
|

|

|

|

|

|
[[cgscmutation:8713|CGSC:8713]]
|
amber (UAG) mutation
|-
|
''lacZ58(del)''(M15)
|

|

|

|

|

|
[[cgscmutation:8749|CGSC:8749]]
|

|-
|
''lacZ98::Tn10''
|

|

|

|

|

|
[[cgscmutation:8864|CGSC:8864]]
|

|-
|
''lacZ545''(Am)
|

|

|

|

|

|
[[cgscmutation:8947|CGSC:8947]]
|
amber (UAG) mutation
|-
|
''lacZ2286''(Am)
|

|

|

|

|

|
[[cgscmutation:9797|CGSC:9797]]
|
amber (UAG) mutation
|-
|
''lacZ624''(Am)
|

|

|

|

|
PMID:4915862
|
[[cgscmutation:10716|CGSC:10716]]
|
amber (UAG) mutation
|-
|
''lacZ95(del)''
|

|

|

|

|

|
[[cgscmutation:10738|CGSC:10738]]
|

|-
|
''lacZ114((delH))''
|

|

|

|

|

|
[[cgscmutation:10830|CGSC:10830]]
|

|-
|
''lacZ55''
|

|

|

|

|

|
[[cgscmutation:11758|CGSC:11758]]
|

|-
|
''lacZ2210''(Am)
|

|

|

|

|

|
[[cgscmutation:11841|CGSC:11841]]
|
amber (UAG) mutation
|-
|
''lacZ332''(Fs)
|

|

|

|

|
PMID:1092652
|
[[cgscmutation:12130|CGSC:12130]]
|

|-
|
''lacZ4503''(Am)
|

|

|

|

|

|
[[cgscmutation:12975|CGSC:12975]]
|
amber (UAG) mutation
|-
|
''lacZ49''
|

|

|

|

|

|
[[cgscmutation:16030|CGSC:16030]]
|

|-
|
''lacZ56''
|

|

|

|

|

|
[[cgscmutation:16066|CGSC:16066]]
|

|-
|
''lacZ131''
|

|

|

|

|

|
[[cgscmutation:19612|CGSC:19612]]
|

|-
|
''lacZ2246''
|

|

|

|

|

|
[[cgscmutation:19613|CGSC:19613]]
|

|-
|
''lacZ8''(Am)
|

|

|

|

|
PMID:2141650
|
[[cgscmutation:23460|CGSC:23460]]
|
amber (UAG) mutation
|-
|
''lacZ59''
|

|

|

|

|

|
[[cgscmutation:26947|CGSC:26947]]
|

|-
|
''lacZ4502::Tn10''
|

|

|

|

|
PMID:337110
|
[[cgscmutation:59813|CGSC:59813]]
|

|-
|
''lacZ4787(del)''(::rrnB-3)
|

|

|

|

|
PMID:10829079
|
[[cgscmutation:64656|CGSC:64656]]
|

|-
|
''lacZ4796::Tn5''
|

|

|

|

|

|
[[cgscmutation:76213|CGSC:76213]]
|

|-
|
''lacZ536''(Am)
|

|

|

|

|

|
[[cgscmutation:83183|CGSC:83183]]
|
amber (UAG) mutation
|-
|
''lacZ571''(Am)
|

|

|

|

|
PMID:2501784
|
[[cgscmutation:83642|CGSC:83642]]
|
amber (UAG) mutation
|-
|
''lacZ8305::Mu cts62''
|

|

|

|

|
PMID:1111215
|
[[cgscmutation:84395|CGSC:84395]]
|

|-
|
''lacZ4525::Tn10kan''
|

|

|

|

|
PMID:9139905
|
[[cgscmutation:85232|CGSC:85232]]
|

|-
|
''lacZ572''
|

|

|

|

|
PMID:2501784
|
[[cgscmutation:89114|CGSC:89114]]
|

|-
|
''lacZ574''
|

|

|

|

|
PMID:2501784
|
[[cgscmutation:89115|CGSC:89115]]
|

|-
|
''lacZ573''
|

|

|

|

|
PMID:2501784
|
[[cgscmutation:89116|CGSC:89116]]
|

|-
|
''lacZ575''
|

|

|

|

|
PMID:2501784
|
[[cgscmutation:89118|CGSC:89118]]
|

|-
|
''lacZ576''
|

|

|

|

|
PMID:2501784
|
[[cgscmutation:89119|CGSC:89119]]
|

|-
|
''lacZ1125''
|

|

|

|

|
PMID:4915862 PMID:5327654
|
[[cgscmutation:89575|CGSC:89575]]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11259.B46a9adc5192aa&page=11259&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="D4de00174b1820" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.11259.D4de00174b1820&page=11259&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>

===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="H46a9adc5b7ab0" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0335
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCACCATGATTACGGATTCACT

Primer 2:CCTTTTTGACACCAGACCAACTG
|-
|
[[:Category:Kohara_Phage:10A6|10A6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=138 Genobase]
|
PMID:3038334
|-
|
[[proA:Gene|proA81::Tn10]]
|
Linked marker
|
CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[lacI:Gene|lacI3042::Tn10]]
|
Linked marker
|
CAG18439 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39002 CGSC7334]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 87% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:lacI42::Tn10 nnnCAG18439 also carries lacZ118(0c) (CGSC).

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11259.H46a9adc5b7ab0&page=11259&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="R46a9adc64e5a6" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10527 ECOCYC:EG10527]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10527 EcoGene:EG10527]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945006 GeneID:945006]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11259.R46a9adc64e5a6&page=11259&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a9adc970460" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11259.U46a9adc970460&page=11259&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:lac genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

gyrA:Gene

2013-04-12T16:15:18Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrA}}{{Tab On|Gene|gyrA}}{{Tab|Gene Product(s)|gyrA}}{{Tab|Expression|gyrA}}{{Tab|Evolution|gyrA}}{{Tab|On One Page|gyrA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="R46a9d91c5e712" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2223, b2231, JW2225, hisW, nalA, parD, nfxA, norA''<ref name='LIB:Riley_2006'/>, norA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15021.R46a9d91c5e712&page=15021&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="C46a9d91cdc05f" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
50.32 minutes 
|
MG1655: 2337442..2334815 <gbrowseImage>
name=NC_000913:2334815..2337442
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10423 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2333815|2338442|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2334815|2337442|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10423 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2286120..2283493 <gbrowseImage>
name=NC_012967:2283493..2286120
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2283493|2286120|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2283493|2286120|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2220620..2223247 <gbrowseImage>
name=NC_012759:2220620..2223247
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2220620|2223247|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2220620|2223247|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2344090..2341463 <gbrowseImage>
name=AC_000091:2341463..2344090
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2340463|2345090|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2341463|2344090|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2428430..2425803 <gbrowseImage>
name=NC_010473:2425803..2428430
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2420549|2433684|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2420549|2433684|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15021.C46a9d91cdc05f&page=15021&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="G46a9d91d92aa0" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
2334818
|
Edman degradation
|
PMID:3029031 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15021.G46a9d91d92aa0&page=15021&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9d91dd79d1" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrAA67S
|

|
A67S
|

|
(in PPA-10; quinolone-resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAG81C
|

|
G81C
|

|
(in NAL-97; quinolone-resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAD678E
|

|
D678E
|

|
(in strain: 227)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAI798IMMI
|

|
I798IMMI
|

|
(in KL-16; quinolone- resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAA828S
|

|
A828S
|

|
(in strain: 227)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAS83A
|

|
S83A
|

|
Resistant to fluoroquinolones
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAQ106R
|

|
Q106R
|

|
Resistant to fluoroquinolones
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAS83W
|

|
S83W
|

|
(in PPA-18 and strain 227; quinolone-resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAA84P
|

|
A84P
|

|
(in PPA-05; quinolone-resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAD87N
|

|
D87N
|

|
(in NAL-113 and KL-16; quinolone- resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAQ106H
|

|
Q106H
|

|
(in NAL-89; quinolone-resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAD87V
|

|
D87V
|

|
(in strain: 202; quinolone- resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
gyrAS83L
|

|
S83L
|

|
(in NAL-51, NAL-112, NAL-118 and NAL-119; quinolone-resistant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES4 UniProt:P0AES4]
|-
|
''gyrA98''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:4735|CGSC:4735]]
|

|-
|
''gyrA20''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:4693|CGSC:4693]]
|

|-
|
''gyrA12''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:5833|CGSC:5833]]
|

|-
|
''gyrA26''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:6591|CGSC:6591]]
|

|-
|
''gyrA39''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:6657|CGSC:6657]]
|

|-
|
''gyrA96''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:6781|CGSC:6781]]
|

|-
|
''gyrA91''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:6799|CGSC:6799]]
|

|-
|
''gyrA93''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:7183|CGSC:7183]]
|

|-
|
''gyrA216''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:7227|CGSC:7227]]
|

|-
|
''gyrA220''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:7261|CGSC:7261]]
|

|-
|
''gyrA218''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:7270|CGSC:7270]]
|

|-
|
''gyrA13''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:8316|CGSC:8316]]
|

|-
|
''gyrA19''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:8423|CGSC:8423]]
|

|-
|
''gyrA111''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:8506|CGSC:8506]]
|

|-
|
''gyrA261''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:8753|CGSC:8753]]
|

|-
|
''gyrA90''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:9163|CGSC:9163]]
|

|-
|
''gyrA99''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:9220|CGSC:9220]]
|

|-
|
''gyrA49''
|

|

|

|

|

|
[[cgscmutation:9554|CGSC:9554]]
|

|-
|
''gyrA217''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:9588|CGSC:9588]]
|

|-
|
''gyrA223''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:9628|CGSC:9628]]
|

|-
|
''gyrA219''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:9719|CGSC:9719]]
|

|-
|
''gyrA271''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:10266|CGSC:10266]]
|

|-
|
''gyrA260''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:10312|CGSC:10312]]
|

|-
|
''gyrA270''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:10450|CGSC:10450]]
|

|-
|
''[gyrA43]''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:10853|CGSC:10853]]
|

|-
|
''gyrA25''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:10898|CGSC:10898]]
|

|-
|
''gyrA21''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:11844|CGSC:11844]]
|

|-
|
''gyrA222''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:12272|CGSC:12272]]
|

|-
|
''gyrA29''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:12928|CGSC:12928]]
|

|-
|
''gyrA17''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:14039|CGSC:14039]]
|

|-
|
''gyrA42''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:17046|CGSC:17046]]
|

|-
|
''gyrA283''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:17056|CGSC:17056]]
|

|-
|
''gyrA44''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:17109|CGSC:17109]]
|

|-
|
''gyrA37''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:19366|CGSC:19366]]
|

|-
|
''gyrA329''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:23665|CGSC:23665]]
|

|-
|
''gyrA284''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:26543|CGSC:26543]]
|

|-
|
''gyrA900''
|

|

|

|

|

|
[[cgscmutation:73380|CGSC:73380]]
|

|-
|
''gyrA586''(NalR)
|

|

|

|
nalidixic acid resistant
|

|
[[cgscmutation:90278|CGSC:90278]]
|

|-
|
gyrA(Am) from OV6
|

|

|
Growth Phenotype
|
at 42C the separation of DNA into nucleoids and division localization are both disturbed but cells have continued growth and DNA replication
production of cells, and normal sized cells are all produced at 42C
|
PMID:330757
|

|

|-
|
''gyrA43(TS)''
|

|

|
Resistant to
|
Resistant to Nalidixic Acid at the permissive temperature 32 C.
|
PMID:3025879
|
Strain: KRF949

Parental Strain: [http://cgsc.biology.yale.edu/Strain.php?ID=10860 CGSC KNK43]

[http://cgsc.biology.yale.edu/Mutation.php?ID=10853 CGSC] of allele, not strain.
|

|-
|
''gyrA43''
|

|

|
Resistant to
|
Resistant to Triazolealanine.
|
PMID:3025879
|
Strain: KRE449

Parental:[http://cgsc.biology.yale.edu/Strain.php?ID=10860 CGSC KNK453]
|
Results on table 4.
|-
|
nalA mutation in MH5
|

|

|
Resistant to
|
resistance to nalidixic acid
|
PMID:4895844
|

|
similar strain: MH7
resistant at 40ug nal per ml, sensitive at 60ug nal per ml
|-
|
''gyrAR'' ''S83L''
|

|
''S83L''
|
Resistant to
|
Quinolone Resistance
|
PMID:8524852
|

|
The mutation conferred an increase in resistance toward Quinolones. See figure 1B.
chEBI:23765

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|}


<protect></protect>
===Notes===
A Latin American study found that the ''gyrA'' single-point mutation has caused ''E. coli'' to become resistant to Fluoroquinolones, or antimicrobial drugs. This has resulted in an increase in the number of urinary tract infections. <ref name='PMID:10744370'/>

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="G4e04bcc82efc8" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.15021.G4e04bcc82efc8&page=15021&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="B46a9d91e8e70c" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2225
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGACCTTGCGAGAGAAAT

Primer 2:CCTTCTTCTTCTGGCTCGTCGTC
|-
|
[[:Category:Kohara_Phage:E13A5|E13A5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=376 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2E8|2E8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=377 Genobase]
|
PMID:3038334
|-
|
[[atoS:Gene|atoS298::Tn10]]
|
Linked marker
|
CAG12177 gyrA+ = [http://cgsc2.biology.yale.edu/Strain.php?ID=44154 CGSC7525]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 59% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zeh-298::Tn10, zej-298::Tn10 nnnThe original CAG12177 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).
|-
|
[[yfaL:Gene|zfa-723::Tn10]]
|
Linked marker
|
CAG12178 gyrA+ = [http://cgsc2.biology.yale.edu/Strain.php?ID=44155 CGSC7526]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 76% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zei-723::Tn10, zfa-723::Tn10 nnnThe original CAG12178 was NalR. This is a NalS derivative constructed by S. McAteer (CGSC).

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15021.B46a9d91e8e70c&page=15021&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="C46a9d91f2e5e3" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10423 ECOCYC:EG10423]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10423 EcoGene:EG10423]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946614 GeneID:946614]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15021.C46a9d91f2e5e3&page=15021&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="A46a6f64ab76e7" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15021.A46a6f64ab76e7&page=15021&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

tnaB:Gene

2013-04-11T16:49:21Z

Wameza: Table edited by Wameza via TableEdit

ccmG:Gene

2013-04-10T19:35:12Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ccmG}}{{Tab On|Gene|ccmG}}{{Tab|Gene Product(s)|ccmG}}{{Tab|Expression|ccmG}}{{Tab|Evolution|ccmG}}{{Tab|On One Page|ccmG}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="R46a9d8382bbc2" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''ccmG''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Cytochrome c maturation
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2187, b2195, JW2183, dsbE, yejQ''<ref name='LIB:Riley_2006'/>, yejQ''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14949.R46a9d8382bbc2&page=14949&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="Y46a9d838a8b9b" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
49.37 minutes 
|
MG1655: 2290986..2290429 <gbrowseImage>
name=NC_000913:2290429..2290986
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12053 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2289429|2291986|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2290429|2290986|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12053 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2242953..2242396 <gbrowseImage>
name=NC_012967:2242396..2242953
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2242396|2242953|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2242396|2242953|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2176234..2176791 <gbrowseImage>
name=NC_012759:2176234..2176791
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2176234|2176791|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2176234|2176791|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2296298..2295741 <gbrowseImage>
name=AC_000091:2295741..2296298
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2294741|2297298|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2295741|2296298|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2381974..2381417 <gbrowseImage>
name=NC_010473:2381417..2381974
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2380303|2383088|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2380303|2383088|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14949.Y46a9d838a8b9b&page=14949&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="N46a9d8395e99f" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14949.N46a9d8395e99f&page=14949&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9d839a3698" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ccmG(del)'' (Keio:JW2183)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108046 CGSC9765]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007264 dsbE::Tn5KAN-2] (FB20683)
|
Insertion at nt 320 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20683]
|
contains [[pKD46]]
|-
|
dsbEC80S
|

|
C80S
|

|
Drastic decrease in activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AA86 UniProt:P0AA86]
|-
|
dsbEC83S
|

|
C83S
|

|
Drastic decrease in activity
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0AA86 UniProt:P0AA86]
|-
|
''ccmG748(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100264|CGSC:100264]]
|

|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien Accumulation
|
Loss of heme-containing membrane proteins
|
PMID:7635817
|

|
See figure 3 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Cytochrome accumulation
|
Loss of cytochromec550
|
PMID:7635817
|

|
See figure 4 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Cytochrome biogenesis
|
Loss of cytochromec550
|
PMID:7635817
|

|
See figure 5 for experimental results.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14949.M46a9d839a3698&page=14949&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="K4e04b8937e9ad" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.14949.K4e04b8937e9ad&page=14949&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="J46a9d83a592d1" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2183
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAAGCGCAAAGTATTGTTAAT

Primer 2:CCTTGTGCGGCCTCCTTACTGTA
|-
|
[[:Category:Kohara_Phage:20F6|20F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=371 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:19D1|19D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=372 Genobase]
|
PMID:3038334
|-
|
[[gatY:Gene|zbd-3104::Tn10]]
|
Linked marker
|
CAG12021 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39386 CGSC7344]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10
|-
|
[[napA:Gene|napA722::Tn10]]
|
Linked marker
|
CAG12098 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40003 CGSC7400]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 69% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zeg-722, zei-722::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14949.J46a9d83a592d1&page=14949&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Y46a9d83aecc68" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12053 ECOCYC:EG12053]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12053 EcoGene:EG12053]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=949073 GeneID:949073]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14949.Y46a9d83aecc68&page=14949&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="B46a6f56a2191f" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14949.B46a6f56a2191f&page=14949&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ccm genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

ccmF:Gene

2013-04-10T19:32:08Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ccmF}}{{Tab On|Gene|ccmF}}{{Tab|Gene Product(s)|ccmF}}{{Tab|Expression|ccmF}}{{Tab|Evolution|ccmF}}{{Tab|On One Page|ccmF}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="S46a9d83eb84b0" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''ccmF''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Cytochrome c maturation
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2188, b2196, JW2184, yejR''<ref name='LIB:Riley_2006'/>, yejR''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14951.S46a9d83eb84b0&page=14951&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="D46a9d83f4113f" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
49.38 minutes 
|
MG1655: 2292926..2290983 <gbrowseImage>
name=NC_000913:2290983..2292926
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12054 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2289983|2293926|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2290983|2292926|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12054 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2244893..2242950 <gbrowseImage>
name=NC_012967:2242950..2244893
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2242950|2244893|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2242950|2244893|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2176788..2178731 <gbrowseImage>
name=NC_012759:2176788..2178731
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2176788|2178731|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2176788|2178731|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2298238..2296295 <gbrowseImage>
name=AC_000091:2296295..2298238
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2295295|2299238|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2296295|2298238|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2383914..2381971 <gbrowseImage>
name=NC_010473:2381971..2383914
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2378085|2387800|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2378085|2387800|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14951.D46a9d83f4113f&page=14951&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="P46a9d83feb2ff" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14951.P46a9d83feb2ff&page=14951&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9d8403bfb4" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ccmF(del)'' (Keio:JW2184)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108047 CGSC9766]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007269 ccmF::Tn5KAN-2] (FB20684)
|
Insertion at nt 872 in Minus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20684]
|
does not contain [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007269 ccmF::Tn5KAN-2] (FB20685)
|
Insertion at nt 872 in Minus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20685]
|
contains [[pKD46]]
|-
|
''ccmF749(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100262|CGSC:100262]]
|

|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien accumulation
|
Loss of heme-containing membrane proteins
|
PMID:7635817
|

|
See figure 3 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien accumulation
|
Loss of cytochrome ''c550''
|
PMID:7635817
|

|
See figure 4 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome biogenesis
|
Deficient cytochrome biogenesis
|
PMID:7635817
|

|
See figure 5 for experimental results.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14951.I46a9d8403bfb4&page=14951&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="N4e04b8922d938" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.14951.N4e04b8922d938&page=14951&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="Z46a9d840e5fc0" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2184
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCATGCCAGAAATTGGTAACGG

Primer 2:CCTACGGCCTCCGGCGCAGTTTT
|-
|
[[:Category:Kohara_Phage:20F6|20F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=371 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:19D1|19D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=372 Genobase]
|
PMID:3038334
|-
|
[[gatY:Gene|zbd-3104::Tn10]]
|
Linked marker
|
CAG12021 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39386 CGSC7344]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10
|-
|
[[napA:Gene|napA722::Tn10]]
|
Linked marker
|
CAG12098 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40003 CGSC7400]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 70% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zeg-722, zei-722::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14951.Z46a9d840e5fc0&page=14951&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="A46a9d841859d2" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12054 ECOCYC:EG12054]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12054 EcoGene:EG12054]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948783 GeneID:948783]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14951.A46a9d841859d2&page=14951&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="E46a6f5709ca12" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14951.E46a6f5709ca12&page=14951&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ccm genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

ccmE:Gene

2013-04-10T19:18:11Z

Wameza: Table edited by Wameza via TableEdit

ccmD:Gene

2013-04-10T19:14:05Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ccmD}}{{Tab On|Gene|ccmD}}{{Tab|Gene Product(s)|ccmD}}{{Tab|Expression|ccmD}}{{Tab|Evolution|ccmD}}{{Tab|On One Page|ccmD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="G46a9d84be0a79" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''ccmD''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Cytochrome c maturation
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2190, b2198, JW2186, yojM''<ref name='LIB:Riley_2006'/>, yojM''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14955.G46a9d84be0a79&page=14955&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="C46a9d84c698d2" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
49.43 minutes 
|
MG1655: 2293608..2293399 <gbrowseImage>
name=NC_000913:2293399..2293608
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12169 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2292399|2294608|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2293399|2293608|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12169 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2245575..2245366 <gbrowseImage>
name=NC_012967:2245366..2245575
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2245366|2245575|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2245366|2245575|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2179204..2179413 <gbrowseImage>
name=NC_012759:2179204..2179413
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2179204|2179413|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2179204|2179413|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2298920..2298711 <gbrowseImage>
name=AC_000091:2298711..2298920
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2297711|2299920|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2298711|2298920|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2384596..2384387 <gbrowseImage>
name=NC_010473:2384387..2384596
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2383969|2385014|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2383969|2385014|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14955.C46a9d84c698d2&page=14955&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="N46a9d84d2557d" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14955.N46a9d84d2557d&page=14955&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9d84d6a403" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ccmD(del)'' (Keio:JW2186)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108049 CGSC9768]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007273 ccmD::Tn5KAN-2] (FB20686)
|
Insertion at nt 94 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20686]
|
does not contain [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007273 ccmD::Tn5KAN-2] (FB20687)
|
Insertion at nt 94 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20687]
|
contains [[pKD46]]
|-
|
''ccmD751(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100258|CGSC:100258]]
|

|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien Accumulation
|
Loss of heme-containing membrane proteins.
|
PMID:7635817
|

|
See figure 3 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome accumulation
|
Loss of cytochrome c550.
|
PMID:7635817
|

|
See figure 4 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome biogenesis
|
Deficient cytochrome biogenesis
|
PMID:7635817
|

|
See figure 5 for experimental results.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14955.U46a9d84d6a403&page=14955&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="W4e04b88f52331" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.14955.W4e04b88f52331&page=14955&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="C46a9d84e202f4" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2186
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCACCCCTGCATTTGCTTCCTG

Primer 2:CCTGCAGCCTCCTGCTGTTGCGC
|-
|
[[:Category:Kohara_Phage:20F6|20F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=371 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:19D1|19D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=372 Genobase]
|
PMID:3038334
|-
|
[[gatY:Gene|zbd-3104::Tn10]]
|
Linked marker
|
CAG12021 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39386 CGSC7344]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10
|-
|
[[napA:Gene|napA722::Tn10]]
|
Linked marker
|
CAG12098 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40003 CGSC7400]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 77% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zeg-722, zei-722::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14955.C46a9d84e202f4&page=14955&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="W46a9d84eb4298" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12169 ECOCYC:EG12169]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12169 EcoGene:EG12169]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946709 GeneID:946709]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14955.W46a9d84eb4298&page=14955&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a6f57dc6a5f" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14955.U46a6f57dc6a5f&page=14955&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ccm genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

ccmA:Gene

2013-04-10T19:07:49Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ccmA}}{{Tab On|Gene|ccmA}}{{Tab|Gene Product(s)|ccmA}}{{Tab|Expression|ccmA}}{{Tab|Evolution|ccmA}}{{Tab|On One Page|ccmA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="L46a9d85faca85" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''ccmA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Cytochrome c maturation
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2193, b2201, JW5366, yejW''<ref name='LIB:Riley_2006'/>, yejW''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.L46a9d85faca85&page=14961&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="U46a9d86035ac9" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
49.47 minutes 
|
MG1655: 2295666..2295043 <gbrowseImage>
name=NC_000913:2295043..2295666
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12059 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2294043|2296666|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2295043|2295666|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12059 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2247633..2247010 <gbrowseImage>
name=NC_012967:2247010..2247633
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2247010|2247633|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2247010|2247633|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2180848..2181471 <gbrowseImage>
name=NC_012759:2180848..2181471
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2180848|2181471|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2180848|2181471|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2300978..2300355 <gbrowseImage>
name=AC_000091:2300355..2300978
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2299355|2301978|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2300355|2300978|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2386654..2386031 <gbrowseImage>
name=NC_010473:2386031..2386654
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2384785|2387900|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2384785|2387900|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.U46a9d86035ac9&page=14961&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="B46a9d860dfa61" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.B46a9d860dfa61&page=14961&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9d86130552" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ccmA(del)'' (Keio:JW5366)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=109625 CGSC11344]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007279 ccmA::Tn5KAN-2] (FB20692)
|
Insertion at nt 163 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20692]
|
does not contain [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007279 ccmA::Tn5KAN-2] (FB20693)
|
Insertion at nt 163 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20693]
|
contains [[pKD46]]
|-
|
''ccmA754(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100252|CGSC:100252]]
|

|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien production
|
Loss of heme-containing membrane proteins
|
PMID:7635817
|

|
See Figure 3 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome accumulation
|
Loss of mature cytochromec550
|
PMID:7635817
|

|
See Figure 4 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome biogenesis
|
Deficient cytochrome biogenesis
|
PMID:7635817
|

|
See Figure 5 for experimental results.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.B46a9d86130552&page=14961&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="T4e04b88b2e4d6" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.14961.T4e04b88b2e4d6&page=14961&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="C46a9d861da966" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5366
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGGTATGCTTGAAGCCAGAGA

Primer 2:CCTGCGGCCCTCGTTTGCGTCAG
|-
|
[[:Category:Kohara_Phage:20F6|20F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=371 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:19D1|19D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=372 Genobase]
|
PMID:3038334
|-
|
[[gatY:Gene|zbd-3104::Tn10]]
|
Linked marker
|
CAG12021 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39386 CGSC7344]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10
|-
|
[[napA:Gene|napA722::Tn10]]
|
Linked marker
|
CAG12098 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40003 CGSC7400]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 81% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zeg-722, zei-722::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.C46a9d861da966&page=14961&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="B46a9d8627a2c0" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12059 ECOCYC:EG12059]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12059 EcoGene:EG12059]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946714 GeneID:946714]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.B46a9d8627a2c0&page=14961&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Z46a6f59172614" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.Z46a6f59172614&page=14961&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ccm genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

ccmB:Gene

2013-04-10T19:05:01Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ccmB}}{{Tab On|Gene|ccmB}}{{Tab|Gene Product(s)|ccmB}}{{Tab|Expression|ccmB}}{{Tab|Evolution|ccmB}}{{Tab|On One Page|ccmB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Z46a9d8591d8cd" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''ccmB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Cytochrome c maturation
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2192, b2200, JW2188, yejV''<ref name='LIB:Riley_2006'/>, yejV''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14959.Z46a9d8591d8cd&page=14959&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="O46a9d8599a7d1" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
49.45 minutes, 49.45 minutes 
|
MG1655: 2295046..2294384 <gbrowseImage>
name=NC_000913:2294384..2295046
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12058 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2293384|2296046|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2294384|2295046|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12058 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2247013..2246351 <gbrowseImage>
name=NC_012967:2246351..2247013
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2246351|2247013|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2246351|2247013|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2180189..2180851 <gbrowseImage>
name=NC_012759:2180189..2180851
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2180189|2180851|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2180189|2180851|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2300358..2299696 <gbrowseImage>
name=AC_000091:2299696..2300358
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2298696|2301358|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2299696|2300358|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2386034..2385372 <gbrowseImage>
name=NC_010473:2385372..2386034
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2384048|2387358|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2384048|2387358|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14959.O46a9d8599a7d1&page=14959&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="P46a9d85a50c4b" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14959.P46a9d85a50c4b&page=14959&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9d85a95bbc" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ccmB(del)'' (Keio:JW2188)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108051 CGSC9770]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007277 ccmB::Tn5KAN-2] (FB20690)
|
Insertion at nt 367 in Minus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20690]
|
contains [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007277 ccmB::Tn5KAN-2] (FB20691)
|
Insertion at nt 367 in Minus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20691]
|
does not contain [[pKD46]]
|-
|
''ccmB753(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100254|CGSC:100254]]
|

|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien accumulation
|
Loss of heme-containing membrane protein
|
PMID:7635817
|

|
See Figure 3 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome accumulation
|
Loss of mature cytochrome c550
|
PMID:7635817
|

|
See Figure 4 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome biogenesis
|
Deficient cytochrome biogenesis
|
PMID:7635817
|

|
See Figure 5 for experimental results.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14959.N46a9d85a95bbc&page=14959&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="J4e04b88c817d9" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.14959.J4e04b88c817d9&page=14959&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="B46a9d85b4c0b9" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2188
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCATGTTCTGGCGCATTTTCCG

Primer 2:CCTTGAATGCTGATTCGTAACGC
|-
|
[[:Category:Kohara_Phage:20F6|20F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=371 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:19D1|19D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=372 Genobase]
|
PMID:3038334
|-
|
[[gatY:Gene|zbd-3104::Tn10]]
|
Linked marker
|
CAG12021 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39386 CGSC7344]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10
|-
|
[[napA:Gene|napA722::Tn10]]
|
Linked marker
|
CAG12098 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40003 CGSC7400]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 79% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zeg-722, zei-722::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14959.B46a9d85b4c0b9&page=14959&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Y46a9d85be004f" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12058 ECOCYC:EG12058]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12058 EcoGene:EG12058]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946692 GeneID:946692]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14959.Y46a9d85be004f&page=14959&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Z46a6f58adbd55" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14959.Z46a6f58adbd55&page=14959&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ccm genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

ccmA:Gene

2013-04-10T18:56:02Z

Wameza: Table edited by Wameza via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ccmA}}{{Tab On|Gene|ccmA}}{{Tab|Gene Product(s)|ccmA}}{{Tab|Expression|ccmA}}{{Tab|Evolution|ccmA}}{{Tab|On One Page|ccmA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="L46a9d85faca85" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''ccmA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Cytochrome c maturation
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2193, b2201, JW5366, yejW''<ref name='LIB:Riley_2006'/>, yejW''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.L46a9d85faca85&page=14961&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="U46a9d86035ac9" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
49.47 minutes 
|
MG1655: 2295666..2295043 <gbrowseImage>
name=NC_000913:2295043..2295666
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12059 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2294043|2296666|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2295043|2295666|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12059 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2247633..2247010 <gbrowseImage>
name=NC_012967:2247010..2247633
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2247010|2247633|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2247010|2247633|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2180848..2181471 <gbrowseImage>
name=NC_012759:2180848..2181471
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2180848|2181471|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2180848|2181471|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2300978..2300355 <gbrowseImage>
name=AC_000091:2300355..2300978
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2299355|2301978|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2300355|2300978|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2386654..2386031 <gbrowseImage>
name=NC_010473:2386031..2386654
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2384785|2387900|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2384785|2387900|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.U46a9d86035ac9&page=14961&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="B46a9d860dfa61" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14961.B46a9d860dfa61&page=14961&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9d86130552" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ccmA(del)'' (Keio:JW5366)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=109625 CGSC11344]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007279 ccmA::Tn5KAN-2] (FB20692)
|
Insertion at nt 163 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20692]
|
does not contain [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007279 ccmA::Tn5KAN-2] (FB20693)
|
Insertion at nt 163 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20693]
|
contains [[pKD46]]
|-
|
''ccmA754(del)''::kan
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100252|CGSC:100252]]
|

|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien production
|
Loss of heme-containing membrane proteins
|
PMID:7635817
|

|
See Figure 3 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
Protien production
|
Loss of mature cytochromec550
|
PMID:7635817
|

|
See Figure 4 for experimental results.
|-
|
''ccmABCDEFG(del)''
|
deletion
|

|
cytochrome biogenesis
|
Deficient cytochrome biogenesis
|
PMID:7635817
|

|
See Figure 5 for experimental results.

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<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="T4e04b88b2e4d6" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

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</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="C46a9d861da966" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5366
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGGTATGCTTGAAGCCAGAGA

Primer 2:CCTGCGGCCCTCGTTTGCGTCAG
|-
|
[[:Category:Kohara_Phage:20F6|20F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=371 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:19D1|19D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=372 Genobase]
|
PMID:3038334
|-
|
[[gatY:Gene|zbd-3104::Tn10]]
|
Linked marker
|
CAG12021 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39386 CGSC7344]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10
|-
|
[[napA:Gene|napA722::Tn10]]
|
Linked marker
|
CAG12098 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40003 CGSC7400]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 81% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zeg-722, zei-722::Tn10

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<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="B46a9d8627a2c0" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12059 ECOCYC:EG12059]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12059 EcoGene:EG12059]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946714 GeneID:946714]
|
Escherichia coli str. K-12 substr. MG1655

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<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Z46a6f59172614" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
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<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ccm genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

ccmG:Gene

2013-04-10T18:37:35Z

Wameza: Table edited by Wameza via TableEdit

ccmF:Gene

2013-04-10T18:35:04Z

Wameza: Table edited by Wameza via TableEdit

ccmE:Gene

2013-04-10T18:30:08Z

Wameza: Table edited by Wameza via TableEdit

ccmD:Gene

2013-04-10T18:24:58Z

Wameza: Table edited by Wameza via TableEdit

ccmC:Gene

2013-04-10T18:22:12Z

Wameza: Table edited by Wameza via TableEdit

ccmB:Gene

2013-04-10T18:06:01Z

Wameza: Table edited by Wameza via TableEdit

ccmA:Gene

2013-04-10T17:16:21Z

Wameza: Table edited by Wameza via TableEdit

ccmG:Gene

2013-04-10T17:01:58Z

Wameza: Table edited by Wameza via TableEdit

ccmF:Gene

2013-04-10T00:01:26Z

Wameza: Table edited by Wameza via TableEdit

ccmE:Gene

2013-04-09T23:56:57Z

Wameza: Table edited by Wameza via TableEdit

ccmD:Gene

2013-04-09T23:55:52Z

Wameza: Table edited by Wameza via TableEdit

ccmC:Gene

2013-04-09T23:43:07Z

Wameza: Table edited by Wameza via TableEdit

ccmC:Gene

2013-04-09T23:37:36Z

Wameza: Table edited by Wameza via TableEdit

ccmB:Gene

2013-04-09T23:33:01Z

Wameza: Table edited by Wameza via TableEdit

ccmA:Gene

2013-04-09T23:18:48Z

Wameza: Table edited by Wameza via TableEdit