EcoliWiki - User contributions [en]

cspA:Gene Product(s)

2010-12-03T22:00:38Z

Snhales: Table edited by Snhales via TableEdit

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<noinclude>{{TabsTop}}
{{Tab|Quickview|cspA}}{{Tab|Gene|cspA}}{{Tab On|Gene Product(s)|cspA}}{{Tab|Expression|cspA}}{{Tab|Evolution|cspA}}{{Tab|On One Page|cspA}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aaf1e4de208" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspA
|-
!align=left {{table heading style}} |Synonyms
||
major cold shock protein<ref name='LIB:Riley_2006'/>, B3556<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, major cold shock protein 7.4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CS7.4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, F10.6<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, cold shock protein CspA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
CspA transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Cold-inducible RNA chaperone and anti-terminator; aids gene expression at low temperature; cold shock protein CS7.4; binds ssRNA and ssDNA<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="J46aaf1e613795" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0009409
|
response to cold
|
PMID:3553157
|
IEP: Inferred from Expression Pattern
|

|
P
|

|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:8995247
|
IDA: Inferred from Direct Assay
|

|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:8995247
|
IDA: Inferred from Direct Assay
|

|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
PMID:3553157
|
IEP: Inferred from Expression Pattern
|

|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
PMID:3553157
|
IEP: Inferred from Expression Pattern
|

|
P
|
CspA level increases after temperature downshift from 37 to 10°C.
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
PMID:7748932
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:8995247
|
IDA: Inferred from Direct Assay
|

|
F
|
Fig. 1-3
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:8995247
|
IDA: Inferred from Direct Assay
|

|
F
|
Fig. 5
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|
Fig. 1C,D
|
complete
|-
|

|
GO:0030401
|
transcription antiterminator activity
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0003727
|
single-stranded RNA binding
|
PMID:8995247
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete

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<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="J46aaf1f9e4eb6" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
rpoC 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
nfnB 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rplC 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rpoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
phoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rplQ 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rplO 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1146120 
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
cca 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
ybhF 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
dsbG 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879694 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879694, EBI-884189 
|-
|
Protein
|
atpG 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
hupB 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rplR 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rpoA 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
ydaY 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 
|-
|
Protein
|
ygcG 
|

|
PMID:15690043
|
Experiment(s):EBI-884189 

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</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="Z46aaf1fab54b9" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
|-
|
cytoplasm
|

|

|

|

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<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="G46aaf1fc7b07c" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=PD03695 at EcoCyc]
<pre>MSGKMTGIVK WFNADKGFGF ITPDDGSKDV FVHFSAIQND GYKSLDEGQK VSFTIESGAK
GPAAGNVTSL</pre>
|-
!align=left {{table heading style}} |Length
||
70
|-
!align=left {{table heading style}} |Mol. Wt
||
7.402 kDa
|-
!align=left {{table heading style}} |pI
||
5.9 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

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<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="L46aaf1fd0027c" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A9X9#section_features UniProt:P0A9X9]
|

|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="H46aaf1fd633cc" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspA
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

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</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="A46aaf1fe5ca9c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
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<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="W46aaf1fec141d" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=PD03695 EcoCyc:PD03695]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A9X9|UniProt:P0A9X9]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A9X9 Pfam:P0A9X9]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418012 RefSeq:NP_418012]
|

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<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="L46a8800b63257" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
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<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspE:Gene Product(s)

2010-12-03T20:41:36Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspE}}{{Tab|Gene|cspE}}{{Tab On|Gene Product(s)|cspE}}{{Tab|Expression|cspE}}{{Tab|Evolution|cspE}}{{Tab|On One Page|cspE}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa3a133a23b" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspE
|-
!align=left {{table heading style}} |Synonyms
||
DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0623<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GicA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
cold shock protein CspE<ref name='LIB:EcoCyc10.6'/>; transcription antiterminator and regulator of RNA stability<ref name='LIB:EcoCyc11.1'/>

Binds and melts RNA, involved in cold acclimation; binds ssDNA; high copy protects the chromosome from decondensation by camphor and increases DNA supercoiling; dimeric<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.X46aa3a133a23b&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Z46aa3a1438a06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:17088256
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 1
|
complete
|-
|

|
GO:0030401
|
transcription antiterminator activity
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 1
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Z46aa3a1438a06&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="F46aa3a3209d8f" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
gabT 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hflB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
secA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
dcuR 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
cspI 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
glmU 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hyfG 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsP 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
serS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoC 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ogrK 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ygbA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
yafO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
torA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
prs 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplU 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ulaF 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
nrdI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.F46aa3a3209d8f&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

selective RNA binding sequence

AAAUUU

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="Y46a7cbc2956ee" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Y46a7cbc2956ee&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa3a33bdf55" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12179-MONOMER at EcoCyc]
<pre>MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG
PSAANVIAL</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.463 kDa
|-
!align=left {{table heading style}} |pI
||
9.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.T46aa3a33bdf55&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="G46aa3a3424157" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A972#section_features UniProt:P0A972]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a7cbc441703" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspE
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="U46aa3a34baa49" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.U46aa3a34baa49&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa3a3511611" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12179-MONOMER EcoCyc:EG12179-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A972 SwissModel:P0A972]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A972|UniProt:P0A972]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A972 Pfam:P0A972]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415156 RefSeq:NP_415156]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="L46a7cbc88ef1a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.L46a7cbc88ef1a&page=20966&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspE:Gene Product(s)

2010-12-03T20:41:00Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspE}}{{Tab|Gene|cspE}}{{Tab On|Gene Product(s)|cspE}}{{Tab|Expression|cspE}}{{Tab|Evolution|cspE}}{{Tab|On One Page|cspE}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa3a133a23b" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspE
|-
!align=left {{table heading style}} |Synonyms
||
DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0623<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GicA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
cold shock protein CspE<ref name='LIB:EcoCyc10.6'/>; transcription antiterminator and regulator of RNA stability<ref name='LIB:EcoCyc11.1'/>

Binds and melts RNA, involved in cold acclimation; binds ssDNA; high copy protects the chromosome from decondensation by camphor and increases DNA supercoiling; dimeric<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.X46aa3a133a23b&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Z46aa3a1438a06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:17088256
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 1
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0030401
|
transcription antiterminator activity
|
PMID:10884409
|

|

|
F
|
Figure 1
|
Missing: evidence

|- class="tableEdit_footer"
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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="F46aa3a3209d8f" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
gabT 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hflB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
secA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
dcuR 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
cspI 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
glmU 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hyfG 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsP 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
serS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoC 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ogrK 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ygbA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
yafO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
torA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
prs 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplU 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ulaF 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
nrdI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.F46aa3a3209d8f&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

selective RNA binding sequence

AAAUUU

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="Y46a7cbc2956ee" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Y46a7cbc2956ee&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa3a33bdf55" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12179-MONOMER at EcoCyc]
<pre>MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG
PSAANVIAL</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.463 kDa
|-
!align=left {{table heading style}} |pI
||
9.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.T46aa3a33bdf55&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="G46aa3a3424157" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A972#section_features UniProt:P0A972]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a7cbc441703" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspE
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="U46aa3a34baa49" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.U46aa3a34baa49&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa3a3511611" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12179-MONOMER EcoCyc:EG12179-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A972 SwissModel:P0A972]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A972|UniProt:P0A972]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A972 Pfam:P0A972]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415156 RefSeq:NP_415156]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="L46a7cbc88ef1a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.L46a7cbc88ef1a&page=20966&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspD:Gene Product(s)

2010-11-19T21:16:39Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspD}}{{Tab|Gene|cspD}}{{Tab On|Gene Product(s)|cspD}}{{Tab|Expression|cspD}}{{Tab|Evolution|cspD}}{{Tab|On One Page|cspD}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="B46aa48c2a22fc" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspD
|-
!align=left {{table heading style}} |Synonyms
||
cold shock protein homolog<ref name='LIB:Riley_2006'/>, B0880<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbjA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
DNA replication inhibitor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;

Component of [[:Category:Complex:cold shock protein homolog|cold shock protein homolog]]<ref name='LIB:EcoCyc11.1'/>

Inhibitor of DNA replication; cold shock protein homolog, not cold shock inducible; stationary phase and starvation inducible; lethal when overproduced<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.B46aa48c2a22fc&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="D46aa48c40a05b" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0694
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0008156
|
negative regulation of DNA replication
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0236
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:11260474
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4
|
complete
|-
|

|
GO:0042594
|
response to starvation
|
PMID:9260955
|
IDA: Inferred from Direct Assay
|

|
P
|
Figure 4
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.D46aa48c40a05b&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="H46aa48cad16c3" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
Subunits of [[:Category:Complex:cold shock protein homolog|cold shock protein homolog]]
|
could be indirect
|

|

|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
cspC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767, EBI-883980 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
tehB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
acrD 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
aspA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ddpB 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ddlA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
dppD 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
skp 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsT 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsU 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ydiA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
yfiF 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.H46aa48cad16c3&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="R46a7da9037587" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
|-
|
Nucleoid
|

|

|
PMID:11520610
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.R46a7da9037587&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="S46aa48ccf1018" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG11111-MONOMER at EcoCyc]
<pre>MEKGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVQF DVHQGPKGNH
ASVIVPVEVE AAVA</pre>
|-
!align=left {{table heading style}} |Length
||
74
|-
!align=left {{table heading style}} |Mol. Wt
||
7.968 kDa
|-
!align=left {{table heading style}} |pI
||
6.2 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
8,480 - 8,605 (calc based on 2 Y, 1 W, and 1 C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.S46aa48ccf1018&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="R46aa48cd58bb5" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
1..67
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.R46aa48cd58bb5&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="V46a7da91d08ef" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspD
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.V46a7da91d08ef&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="Z46aa48cdf261c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Z46aa48cdf261c&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Z46aa48ce4b0eb" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11111-MONOMER EcoCyc:EG11111-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A968 SwissModel:P0A968]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A968|UniProt:P0A968]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A968 Pfam:P0A968]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415401 RefSeq:NP_415401]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Z46aa48ce4b0eb&page=21586&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Q46a7da9622574" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Q46a7da9622574&page=21586&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspD:Gene Product(s)

2010-11-19T20:54:11Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspD}}{{Tab|Gene|cspD}}{{Tab On|Gene Product(s)|cspD}}{{Tab|Expression|cspD}}{{Tab|Evolution|cspD}}{{Tab|On One Page|cspD}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="B46aa48c2a22fc" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspD
|-
!align=left {{table heading style}} |Synonyms
||
cold shock protein homolog<ref name='LIB:Riley_2006'/>, B0880<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbjA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
DNA replication inhibitor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;

Component of [[:Category:Complex:cold shock protein homolog|cold shock protein homolog]]<ref name='LIB:EcoCyc11.1'/>

Inhibitor of DNA replication; cold shock protein homolog, not cold shock inducible; stationary phase and starvation inducible; lethal when overproduced<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.B46aa48c2a22fc&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="D46aa48c40a05b" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0694
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0008156
|
negative regulation of DNA replication
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0236
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:11260474
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4
|
complete
|-
|

|
GO:0042594
|
response to starvation
|
PMID:9260955
|
IDA: Inferred from Direct Assay
|

|
P
|
Figure 4
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.D46aa48c40a05b&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="H46aa48cad16c3" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
Subunits of [[:Category:Complex:cold shock protein homolog|cold shock protein homolog]]
|
could be indirect
|

|

|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
cspC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767, EBI-883980 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
tehB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
acrD 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
aspA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ddpB 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ddlA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
dppD 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
skp 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsT 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsU 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ydiA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
yfiF 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.H46aa48cad16c3&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="R46a7da9037587" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.R46a7da9037587&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="S46aa48ccf1018" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG11111-MONOMER at EcoCyc]
<pre>MEKGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVQF DVHQGPKGNH
ASVIVPVEVE AAVA</pre>
|-
!align=left {{table heading style}} |Length
||
74
|-
!align=left {{table heading style}} |Mol. Wt
||
7.968 kDa
|-
!align=left {{table heading style}} |pI
||
6.2 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
8,480 - 8,605 (calc based on 2 Y, 1 W, and 1 C residues)

|- class="tableEdit_footer"
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|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="R46aa48cd58bb5" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
1..67
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.R46aa48cd58bb5&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="V46a7da91d08ef" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspD
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.V46a7da91d08ef&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="Z46aa48cdf261c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Z46aa48cdf261c&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Z46aa48ce4b0eb" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11111-MONOMER EcoCyc:EG11111-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A968 SwissModel:P0A968]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A968|UniProt:P0A968]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A968 Pfam:P0A968]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415401 RefSeq:NP_415401]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Z46aa48ce4b0eb&page=21586&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Q46a7da9622574" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Q46a7da9622574&page=21586&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspB:Gene Product(s)

2010-11-19T20:21:33Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspB}}{{Tab|Gene|cspB}}{{Tab On|Gene Product(s)|cspB}}{{Tab|Expression|cspB}}{{Tab|Evolution|cspB}}{{Tab|On One Page|cspB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa6f310a14e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspB
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/>; Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aa6f320d5e7" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4, Figure 5
|
complete
|-
|

|
GO:0009409
|
response to cold
|
PMID:8022261
|
IDA: Inferred from Direct Assay
|

|
P
|
Figure 5
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.I46aa6f320d5e7&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="M46aa6f328afe5" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
cspA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908, EBI-884189 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
perR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
ydaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146, EBI-1140146 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yhcA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
thrA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
narZ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
infB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yghW 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
eno 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
gltA 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.M46aa6f328afe5&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

selective RNA binding sequence

UUUUU

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="X46a8015c7232a" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46a8015c7232a&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aa6f347012b" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12203-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK VTFSIESGAK
GPAAANVIIT D</pre>
|-
!align=left {{table heading style}} |Length
||
71
|-
!align=left {{table heading style}} |Mol. Wt
||
7.716 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.N46aa6f347012b&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f34d5292" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.W46aa6f34d5292&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="U46a8015e2aaa4" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a8015e2aaa4&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="D46aa6f358ad6c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.D46aa6f358ad6c&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa6f35df5ad" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12203-MONOMER EcoCyc:EG12203-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36995 SwissModel:P36995]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36995|UniProt:P36995]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P36995 Pfam:P36995]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416075 RefSeq:NP_416075]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.P46aa6f35df5ad&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a801628b11b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a801628b11b&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]
[[Category:Pfam:PF00313_!_\'Cold-shock\' DNA-binding domain]]
[[Category:RefGenome_Annotated_Gene]]

cspG:Gene Product(s)

2010-11-05T21:56:48Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspG}}{{Tab|Gene|cspG}}{{Tab On|Gene Product(s)|cspG}}{{Tab|Expression|cspG}}{{Tab|Evolution|cspG}}{{Tab|On One Page|cspG}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="T46aa5019ce0f5" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspG
|-
!align=left {{table heading style}} |Synonyms
||
DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B0990<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
cold shock protein CspG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Cold shock protein homolog, cold-inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="O46aa501ac7582" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0009409
|
response to cold
|
PMID:8631696
|
IDA: Inferred from Direct Assay
|

|
P
|
Figure 3
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.O46aa501ac7582&page=21857&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="A46aa501e313dc" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
amyA 
|

|
PMID:15690043
|
Experiment(s):EBI-883726 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883726 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883726 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-883726 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883726 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883726 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-883726 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rpsE 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
kdpB 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1138538 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.A46aa501e313dc&page=21857&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="Y46a7e232b1f1b" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.Y46a7e232b1f1b&page=21857&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="G46aa501fea742" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=G6511-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ITPDDGSKDV FVHFTAIQSN EFRTLNENQK VEFSIEQGQR
GPAAANVVTL</pre>
|-
!align=left {{table heading style}} |Length
||
70
|-
!align=left {{table heading style}} |Mol. Wt
||
7.78 kDa
|-
!align=left {{table heading style}} |pI
||
5.9 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.G46aa501fea742&page=21857&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="G46aa502052abb" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.G46aa502052abb&page=21857&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="F46a7e2346364b" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspG
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.F46a7e2346364b&page=21857&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="R46aa5020ed33a" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.R46aa5020ed33a&page=21857&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Z46aa502145d7d" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6511-MONOMER EcoCyc:G6511-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A978 SwissModel:P0A978]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A978|UniProt:P0A978]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A978 Pfam:P0A978]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415510 RefSeq:NP_415510]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.Z46aa502145d7d&page=21857&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="K46a7e238a555f" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21857.K46a7e238a555f&page=21857&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspI:Gene Product(s)

2010-11-05T21:22:59Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspI}}{{Tab|Gene|cspI}}{{Tab On|Gene Product(s)|cspI}}{{Tab|Expression|cspI}}{{Tab|Evolution|cspI}}{{Tab|On One Page|cspI}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aa6f030d35f" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspI
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1552<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.V46aa6f030d35f&page=23120&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="E46aa6f0411f06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0009409
|
response to cold
|
PMID:10049393
|
IDA: Inferred from Direct Assay
|

|
P
|
Figure 2
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.E46aa6f0411f06&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="D46aa6f079c3c8" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
rplQ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
matC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
ybeA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
mutM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.D46aa6f079c3c8&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="Y46a8013562603" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.Y46a8013562603&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="O46aa6f096fd15" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=G6825-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNPEKGFGF ITPKDGSKDV FVHFSAIQSN DFKTLTENQE VEFGIENGPK
GPAAVHVVAL</pre>
|-
!align=left {{table heading style}} |Length
||
70
|-
!align=left {{table heading style}} |Mol. Wt
||
7.683 kDa
|-
!align=left {{table heading style}} |pI
||
6.5 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.O46aa6f096fd15&page=23120&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f09d427f" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.W46aa6f09d427f&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="F46a801370c5c6" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspI
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.F46a801370c5c6&page=23120&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="E46aa6f0a891f8" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.E46aa6f0a891f8&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="D46aa6f0adcfda" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6825-MONOMER EcoCyc:G6825-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A986 SwissModel:P0A986]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A986|UniProt:P0A986]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A986 Pfam:P0A986]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416070 RefSeq:NP_416070]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.D46aa6f0adcfda&page=23120&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="G46a8013b8cc7b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.G46a8013b8cc7b&page=23120&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspI:Gene Product(s)

2010-11-05T21:22:33Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspI}}{{Tab|Gene|cspI}}{{Tab On|Gene Product(s)|cspI}}{{Tab|Expression|cspI}}{{Tab|Evolution|cspI}}{{Tab|On One Page|cspI}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aa6f030d35f" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspI
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1552<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.V46aa6f030d35f&page=23120&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="E46aa6f0411f06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0009409
|
response to cold
|
PMID:10049393
|

|

|
P
|
Figure 2
|
Missing: evidence

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.E46aa6f0411f06&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="D46aa6f079c3c8" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
rplQ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
matC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
ybeA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 
|-
|
Protein
|
mutM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140130 

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="Y46a8013562603" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.Y46a8013562603&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="O46aa6f096fd15" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=G6825-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNPEKGFGF ITPKDGSKDV FVHFSAIQSN DFKTLTENQE VEFGIENGPK
GPAAVHVVAL</pre>
|-
!align=left {{table heading style}} |Length
||
70
|-
!align=left {{table heading style}} |Mol. Wt
||
7.683 kDa
|-
!align=left {{table heading style}} |pI
||
6.5 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.O46aa6f096fd15&page=23120&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f09d427f" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.W46aa6f09d427f&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="F46a801370c5c6" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspI
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.F46a801370c5c6&page=23120&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="E46aa6f0a891f8" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.E46aa6f0a891f8&page=23120&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="D46aa6f0adcfda" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6825-MONOMER EcoCyc:G6825-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A986 SwissModel:P0A986]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A986|UniProt:P0A986]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A986 Pfam:P0A986]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416070 RefSeq:NP_416070]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.D46aa6f0adcfda&page=23120&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="G46a8013b8cc7b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23120.G46a8013b8cc7b&page=23120&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspE:Gene Product(s)

2010-11-05T21:05:29Z

Snhales: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspE}}{{Tab|Gene|cspE}}{{Tab On|Gene Product(s)|cspE}}{{Tab|Expression|cspE}}{{Tab|Evolution|cspE}}{{Tab|On One Page|cspE}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa3a133a23b" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspE
|-
!align=left {{table heading style}} |Synonyms
||
DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0623<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GicA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
cold shock protein CspE<ref name='LIB:EcoCyc10.6'/>; transcription antiterminator and regulator of RNA stability<ref name='LIB:EcoCyc11.1'/>

Binds and melts RNA, involved in cold acclimation; binds ssDNA; high copy protects the chromosome from decondensation by camphor and increases DNA supercoiling; dimeric<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.X46aa3a133a23b&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Z46aa3a1438a06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:17088256
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 1
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Z46aa3a1438a06&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="F46aa3a3209d8f" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
gabT 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hflB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
secA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
dcuR 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
cspI 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
glmU 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hyfG 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsP 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
serS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoC 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ogrK 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ygbA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
yafO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
torA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
prs 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplU 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ulaF 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
nrdI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.F46aa3a3209d8f&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

selective RNA binding sequence

AAAUUU

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="Y46a7cbc2956ee" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Y46a7cbc2956ee&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa3a33bdf55" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12179-MONOMER at EcoCyc]
<pre>MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG
PSAANVIAL</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.463 kDa
|-
!align=left {{table heading style}} |pI
||
9.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.T46aa3a33bdf55&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="G46aa3a3424157" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A972#section_features UniProt:P0A972]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a7cbc441703" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspE
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="U46aa3a34baa49" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.U46aa3a34baa49&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa3a3511611" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12179-MONOMER EcoCyc:EG12179-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A972 SwissModel:P0A972]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A972|UniProt:P0A972]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A972 Pfam:P0A972]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415156 RefSeq:NP_415156]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="L46a7cbc88ef1a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.L46a7cbc88ef1a&page=20966&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspB:Gene Product(s)

2010-11-05T21:03:59Z

Snhales: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspB}}{{Tab|Gene|cspB}}{{Tab On|Gene Product(s)|cspB}}{{Tab|Expression|cspB}}{{Tab|Evolution|cspB}}{{Tab|On One Page|cspB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa6f310a14e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspB
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/>; Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aa6f320d5e7" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4, Figure 5
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.I46aa6f320d5e7&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="M46aa6f328afe5" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
cspA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908, EBI-884189 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
perR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
ydaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146, EBI-1140146 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yhcA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
thrA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
narZ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
infB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yghW 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
eno 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
gltA 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.M46aa6f328afe5&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

selective RNA binding sequence

UUUUU

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="X46a8015c7232a" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46a8015c7232a&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aa6f347012b" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12203-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK VTFSIESGAK
GPAAANVIIT D</pre>
|-
!align=left {{table heading style}} |Length
||
71
|-
!align=left {{table heading style}} |Mol. Wt
||
7.716 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.N46aa6f347012b&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f34d5292" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.W46aa6f34d5292&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="U46a8015e2aaa4" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="D46aa6f358ad6c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.D46aa6f358ad6c&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa6f35df5ad" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12203-MONOMER EcoCyc:EG12203-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36995 SwissModel:P36995]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36995|UniProt:P36995]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P36995 Pfam:P36995]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416075 RefSeq:NP_416075]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a801628b11b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a801628b11b&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]
[[Category:Pfam:PF00313_!_\'Cold-shock\' DNA-binding domain]]
[[Category:RefGenome_Annotated_Gene]]

cspC:Gene Product(s)

2010-11-05T21:03:18Z

Snhales: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspC}}{{Tab|Gene|cspC}}{{Tab On|Gene Product(s)|cspC}}{{Tab|Expression|cspC}}{{Tab|Evolution|cspC}}{{Tab|On One Page|cspC}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aa7fc935f9e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspC
|-
!align=left {{table heading style}} |Synonyms
||
stress protein, member of the CspA-family<ref name='LIB:Riley_2006'/>, B1823<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
stress protein, member of the CspA family<ref name='LIB:EcoCyc10.6'/>; stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Multicopy suppressor of mukB; cold shock protein homolog constitutively expressed at 37C; affects rpoS and uspA expression<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.V46aa7fc935f9e&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="H46aa7fca420ea" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0030401
|
transcription antiterminator activity
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
PMID:16858726
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.H46aa7fca420ea&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="L46aa7fcd2dd34" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
aidB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-881486, EBI-883980 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yfiF 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yhiR 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplU 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplW 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsF 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsT 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rsmB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
gmr 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
ydaY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhbY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhiP 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yjdB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rluE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
accD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yeeJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
creC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
dnaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
entB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
glpK 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
metR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
prpD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
putA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rcsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
recN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rfaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rhlE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
topA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
cpxR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
ycgE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.L46aa7fcd2dd34&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

selective RNA binding sequence

AGGGAGGGA

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="G46a8106fc3b60" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.G46a8106fc3b60&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="X46aa7fcf14843" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12204-MONOMER at EcoCyc]
<pre>MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG
PAAVNVTAI</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.401 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.X46aa7fcf14843&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="R46aa7fcf80476" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A9Y6#section_features UniProt:P0A9Y6]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a81071b820f" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspC
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="M46aa7fd043a81" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.M46aa7fd043a81&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="I46aa7fd09f303" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12204-MONOMER EcoCyc:EG12204-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A9Y6 SwissModel:P0A9Y6]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A9Y6|UniProt:P0A9Y6]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A9Y6 Pfam:P0A9Y6]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416337 RefSeq:NP_416337]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a810764524c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.U46a810764524c&page=23740&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspC:Gene Product(s)

2010-11-05T21:02:54Z

Snhales: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspC}}{{Tab|Gene|cspC}}{{Tab On|Gene Product(s)|cspC}}{{Tab|Expression|cspC}}{{Tab|Evolution|cspC}}{{Tab|On One Page|cspC}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aa7fc935f9e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspC
|-
!align=left {{table heading style}} |Synonyms
||
stress protein, member of the CspA-family<ref name='LIB:Riley_2006'/>, B1823<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
stress protein, member of the CspA family<ref name='LIB:EcoCyc10.6'/>; stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Multicopy suppressor of mukB; cold shock protein homolog constitutively expressed at 37C; affects rpoS and uspA expression<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.V46aa7fc935f9e&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="H46aa7fca420ea" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0030401
|
transcription antiterminator activity
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
PMID:16858726
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.H46aa7fca420ea&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="L46aa7fcd2dd34" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
aidB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-881486, EBI-883980 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yfiF 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yhiR 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplU 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplW 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsF 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsT 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rsmB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
gmr 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
ydaY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhbY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhiP 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yjdB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rluE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
accD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yeeJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
creC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
dnaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
entB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
glpK 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
metR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
prpD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
putA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rcsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
recN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rfaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rhlE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
topA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
cpxR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
ycgE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.L46aa7fcd2dd34&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

RNA binding sequence

AGGGAGGGA

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="G46a8106fc3b60" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.G46a8106fc3b60&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="X46aa7fcf14843" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12204-MONOMER at EcoCyc]
<pre>MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG
PAAVNVTAI</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.401 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.X46aa7fcf14843&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="R46aa7fcf80476" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A9Y6#section_features UniProt:P0A9Y6]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a81071b820f" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspC
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.Q46a81071b820f&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="M46aa7fd043a81" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.M46aa7fd043a81&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="I46aa7fd09f303" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12204-MONOMER EcoCyc:EG12204-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A9Y6 SwissModel:P0A9Y6]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A9Y6|UniProt:P0A9Y6]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A9Y6 Pfam:P0A9Y6]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416337 RefSeq:NP_416337]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.I46aa7fd09f303&page=23740&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a810764524c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.U46a810764524c&page=23740&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspB:Gene Product(s)

2010-11-05T21:01:17Z

Snhales: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspB}}{{Tab|Gene|cspB}}{{Tab On|Gene Product(s)|cspB}}{{Tab|Expression|cspB}}{{Tab|Evolution|cspB}}{{Tab|On One Page|cspB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa6f310a14e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspB
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/>; Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46aa6f310a14e&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aa6f320d5e7" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4, Figure 5
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.I46aa6f320d5e7&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="M46aa6f328afe5" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
cspA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908, EBI-884189 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
perR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
ydaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146, EBI-1140146 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yhcA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
thrA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
narZ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
infB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yghW 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
eno 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
gltA 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.M46aa6f328afe5&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

RNA binding sequence

UUUUU

PMID: 10476034

Figure 1

==Localization==

{{Product_localization_help}}
{| id="X46a8015c7232a" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46a8015c7232a&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aa6f347012b" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12203-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK VTFSIESGAK
GPAAANVIIT D</pre>
|-
!align=left {{table heading style}} |Length
||
71
|-
!align=left {{table heading style}} |Mol. Wt
||
7.716 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.N46aa6f347012b&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f34d5292" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.W46aa6f34d5292&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="U46a8015e2aaa4" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a8015e2aaa4&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="D46aa6f358ad6c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.D46aa6f358ad6c&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa6f35df5ad" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12203-MONOMER EcoCyc:EG12203-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36995 SwissModel:P36995]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36995|UniProt:P36995]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P36995 Pfam:P36995]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416075 RefSeq:NP_416075]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.P46aa6f35df5ad&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a801628b11b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a801628b11b&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]
[[Category:Pfam:PF00313_!_\'Cold-shock\' DNA-binding domain]]
[[Category:RefGenome_Annotated_Gene]]

cspB:Gene Product(s)

2010-11-05T19:55:41Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspB}}{{Tab|Gene|cspB}}{{Tab On|Gene Product(s)|cspB}}{{Tab|Expression|cspB}}{{Tab|Evolution|cspB}}{{Tab|On One Page|cspB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa6f310a14e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspB
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/>; Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46aa6f310a14e&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aa6f320d5e7" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4, Figure 5
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.I46aa6f320d5e7&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="M46aa6f328afe5" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
cspA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908, EBI-884189 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
perR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
ydaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146, EBI-1140146 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yhcA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
thrA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
narZ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
infB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yghW 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
eno 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
gltA 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.M46aa6f328afe5&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="X46a8015c7232a" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46a8015c7232a&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aa6f347012b" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12203-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK VTFSIESGAK
GPAAANVIIT D</pre>
|-
!align=left {{table heading style}} |Length
||
71
|-
!align=left {{table heading style}} |Mol. Wt
||
7.716 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.N46aa6f347012b&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f34d5292" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.W46aa6f34d5292&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="U46a8015e2aaa4" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a8015e2aaa4&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="D46aa6f358ad6c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.D46aa6f358ad6c&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa6f35df5ad" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12203-MONOMER EcoCyc:EG12203-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36995 SwissModel:P36995]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36995|UniProt:P36995]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P36995 Pfam:P36995]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416075 RefSeq:NP_416075]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.P46aa6f35df5ad&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a801628b11b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a801628b11b&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]
[[Category:Pfam:PF00313_!_\'Cold-shock\' DNA-binding domain]]
[[Category:RefGenome_Annotated_Gene]]

cspB:Gene Product(s)

2010-11-05T19:54:35Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspB}}{{Tab|Gene|cspB}}{{Tab On|Gene Product(s)|cspB}}{{Tab|Expression|cspB}}{{Tab|Evolution|cspB}}{{Tab|On One Page|cspB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa6f310a14e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspB
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/>; Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aa6f320d5e7" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4, Figure 5
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.I46aa6f320d5e7&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="M46aa6f328afe5" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
cspA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908, EBI-884189 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
perR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
ydaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146, EBI-1140146 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yhcA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
thrA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
narZ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
infB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yghW 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
eno 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
gltA 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="X46a8015c7232a" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
|-
|

|
UUUUU
|
Figure 1
|
PMID:10476034
|
Consensus sequence for selective RNA binding

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46a8015c7232a&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aa6f347012b" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12203-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK VTFSIESGAK
GPAAANVIIT D</pre>
|-
!align=left {{table heading style}} |Length
||
71
|-
!align=left {{table heading style}} |Mol. Wt
||
7.716 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.N46aa6f347012b&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f34d5292" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.W46aa6f34d5292&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="U46a8015e2aaa4" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="D46aa6f358ad6c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.D46aa6f358ad6c&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa6f35df5ad" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12203-MONOMER EcoCyc:EG12203-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36995 SwissModel:P36995]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36995|UniProt:P36995]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P36995 Pfam:P36995]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416075 RefSeq:NP_416075]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a801628b11b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
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|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]
[[Category:Pfam:PF00313_!_\'Cold-shock\' DNA-binding domain]]
[[Category:RefGenome_Annotated_Gene]]

cspC:Gene Product(s)

2010-11-05T19:47:32Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspC}}{{Tab|Gene|cspC}}{{Tab On|Gene Product(s)|cspC}}{{Tab|Expression|cspC}}{{Tab|Evolution|cspC}}{{Tab|On One Page|cspC}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aa7fc935f9e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspC
|-
!align=left {{table heading style}} |Synonyms
||
stress protein, member of the CspA-family<ref name='LIB:Riley_2006'/>, B1823<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
stress protein, member of the CspA family<ref name='LIB:EcoCyc10.6'/>; stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Multicopy suppressor of mukB; cold shock protein homolog constitutively expressed at 37C; affects rpoS and uspA expression<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="H46aa7fca420ea" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0030401
|
transcription antiterminator activity
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
PMID:16858726
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4
|
complete

|- class="tableEdit_footer"
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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="L46aa7fcd2dd34" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
aidB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-881486, EBI-883980 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yfiF 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yhiR 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplU 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplW 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsF 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsT 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rsmB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
gmr 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
ydaY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhbY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhiP 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yjdB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rluE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
accD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yeeJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
creC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
dnaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
entB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
glpK 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
metR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
prpD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
putA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rcsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
recN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rfaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rhlE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
topA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
cpxR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
ycgE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 

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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="G46a8106fc3b60" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.G46a8106fc3b60&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="X46aa7fcf14843" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12204-MONOMER at EcoCyc]
<pre>MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG
PAAVNVTAI</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.401 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.X46aa7fcf14843&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="R46aa7fcf80476" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A9Y6#section_features UniProt:P0A9Y6]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a81071b820f" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspC
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="M46aa7fd043a81" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.M46aa7fd043a81&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="I46aa7fd09f303" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12204-MONOMER EcoCyc:EG12204-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A9Y6 SwissModel:P0A9Y6]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A9Y6|UniProt:P0A9Y6]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A9Y6 Pfam:P0A9Y6]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416337 RefSeq:NP_416337]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a810764524c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.U46a810764524c&page=23740&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspB:Gene Product(s)

2010-11-05T19:40:58Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspB}}{{Tab|Gene|cspB}}{{Tab On|Gene Product(s)|cspB}}{{Tab|Expression|cspB}}{{Tab|Evolution|cspB}}{{Tab|On One Page|cspB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa6f310a14e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspB
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/>; Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aa6f320d5e7" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4, Figure 5
|
complete

|- class="tableEdit_footer"
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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="M46aa6f328afe5" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
cspA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908, EBI-884189 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
perR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
ydaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146, EBI-1140146 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yhcA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
thrA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
narZ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
infB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yghW 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
eno 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
gltA 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.M46aa6f328afe5&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="X46a8015c7232a" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46a8015c7232a&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aa6f347012b" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12203-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK VTFSIESGAK
GPAAANVIIT D</pre>
|-
!align=left {{table heading style}} |Length
||
71
|-
!align=left {{table heading style}} |Mol. Wt
||
7.716 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.N46aa6f347012b&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f34d5292" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.W46aa6f34d5292&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="U46a8015e2aaa4" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a8015e2aaa4&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="D46aa6f358ad6c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.D46aa6f358ad6c&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa6f35df5ad" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12203-MONOMER EcoCyc:EG12203-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36995 SwissModel:P36995]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36995|UniProt:P36995]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P36995 Pfam:P36995]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416075 RefSeq:NP_416075]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.P46aa6f35df5ad&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a801628b11b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a801628b11b&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]
[[Category:Pfam:PF00313_!_\'Cold-shock\' DNA-binding domain]]
[[Category:RefGenome_Annotated_Gene]]

cspE:Gene Product(s)

2010-11-05T19:37:44Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspE}}{{Tab|Gene|cspE}}{{Tab On|Gene Product(s)|cspE}}{{Tab|Expression|cspE}}{{Tab|Evolution|cspE}}{{Tab|On One Page|cspE}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa3a133a23b" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspE
|-
!align=left {{table heading style}} |Synonyms
||
DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0623<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GicA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
cold shock protein CspE<ref name='LIB:EcoCyc10.6'/>; transcription antiterminator and regulator of RNA stability<ref name='LIB:EcoCyc11.1'/>

Binds and melts RNA, involved in cold acclimation; binds ssDNA; high copy protects the chromosome from decondensation by camphor and increases DNA supercoiling; dimeric<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.X46aa3a133a23b&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Z46aa3a1438a06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:17088256
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 1
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Z46aa3a1438a06&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="F46aa3a3209d8f" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
gabT 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hflB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
secA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
dcuR 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
cspI 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
glmU 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hyfG 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsP 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
serS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoC 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ogrK 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ygbA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
yafO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
torA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
prs 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplU 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ulaF 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
nrdI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.F46aa3a3209d8f&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="Y46a7cbc2956ee" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Y46a7cbc2956ee&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa3a33bdf55" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12179-MONOMER at EcoCyc]
<pre>MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG
PSAANVIAL</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.463 kDa
|-
!align=left {{table heading style}} |pI
||
9.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.T46aa3a33bdf55&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="G46aa3a3424157" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A972#section_features UniProt:P0A972]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.G46aa3a3424157&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a7cbc441703" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspE
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Q46a7cbc441703&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="U46aa3a34baa49" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.U46aa3a34baa49&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa3a3511611" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12179-MONOMER EcoCyc:EG12179-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A972 SwissModel:P0A972]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A972|UniProt:P0A972]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A972 Pfam:P0A972]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415156 RefSeq:NP_415156]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.P46aa3a3511611&page=20966&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="L46a7cbc88ef1a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.L46a7cbc88ef1a&page=20966&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspE:Gene Product(s)

2010-11-05T19:20:10Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspE}}{{Tab|Gene|cspE}}{{Tab On|Gene Product(s)|cspE}}{{Tab|Expression|cspE}}{{Tab|Evolution|cspE}}{{Tab|On One Page|cspE}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa3a133a23b" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspE
|-
!align=left {{table heading style}} |Synonyms
||
DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0623<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GicA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
cold shock protein CspE<ref name='LIB:EcoCyc10.6'/>; transcription antiterminator and regulator of RNA stability<ref name='LIB:EcoCyc11.1'/>

Binds and melts RNA, involved in cold acclimation; binds ssDNA; high copy protects the chromosome from decondensation by camphor and increases DNA supercoiling; dimeric<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.X46aa3a133a23b&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Z46aa3a1438a06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:17088256
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 1
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Z46aa3a1438a06&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="F46aa3a3209d8f" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
gabT 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hflB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
secA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
dcuR 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
cspI 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
glmU 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hyfG 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsP 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
serS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoC 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ogrK 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ygbA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
yafO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
torA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
prs 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplU 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ulaF 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
nrdI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="Y46a7cbc2956ee" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Y46a7cbc2956ee&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa3a33bdf55" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12179-MONOMER at EcoCyc]
<pre>MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG
PSAANVIAL</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.463 kDa
|-
!align=left {{table heading style}} |pI
||
9.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.T46aa3a33bdf55&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="G46aa3a3424157" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A972#section_features UniProt:P0A972]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.G46aa3a3424157&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a7cbc441703" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspE
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Q46a7cbc441703&page=20966&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="U46aa3a34baa49" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.U46aa3a34baa49&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa3a3511611" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12179-MONOMER EcoCyc:EG12179-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A972 SwissModel:P0A972]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A972|UniProt:P0A972]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A972 Pfam:P0A972]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415156 RefSeq:NP_415156]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.P46aa3a3511611&page=20966&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="L46a7cbc88ef1a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.L46a7cbc88ef1a&page=20966&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspD:Gene Product(s)

2010-11-05T18:39:36Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspD}}{{Tab|Gene|cspD}}{{Tab On|Gene Product(s)|cspD}}{{Tab|Expression|cspD}}{{Tab|Evolution|cspD}}{{Tab|On One Page|cspD}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="B46aa48c2a22fc" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspD
|-
!align=left {{table heading style}} |Synonyms
||
cold shock protein homolog<ref name='LIB:Riley_2006'/>, B0880<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbjA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
DNA replication inhibitor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;

Component of [[:Category:Complex:cold shock protein homolog|cold shock protein homolog]]<ref name='LIB:EcoCyc11.1'/>

Inhibitor of DNA replication; cold shock protein homolog, not cold shock inducible; stationary phase and starvation inducible; lethal when overproduced<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.B46aa48c2a22fc&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="D46aa48c40a05b" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0694
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012751
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0008156
|
negative regulation of DNA replication
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0236
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
PMID:11260474
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 4
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.D46aa48c40a05b&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="H46aa48cad16c3" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
Subunits of [[:Category:Complex:cold shock protein homolog|cold shock protein homolog]]
|
could be indirect
|

|

|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
cspC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767, EBI-883980 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
tehB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879539 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879539, EBI-883767 
|-
|
Protein
|
acrD 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
aspA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ddpB 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ddlA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
dppD 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
skp 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsT 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
rpsU 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
ydiA 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 
|-
|
Protein
|
yfiF 
|

|
PMID:15690043
|
Experiment(s):EBI-883767 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.H46aa48cad16c3&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="R46a7da9037587" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.R46a7da9037587&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="S46aa48ccf1018" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG11111-MONOMER at EcoCyc]
<pre>MEKGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVQF DVHQGPKGNH
ASVIVPVEVE AAVA</pre>
|-
!align=left {{table heading style}} |Length
||
74
|-
!align=left {{table heading style}} |Mol. Wt
||
7.968 kDa
|-
!align=left {{table heading style}} |pI
||
6.2 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
8,480 - 8,605 (calc based on 2 Y, 1 W, and 1 C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.S46aa48ccf1018&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="R46aa48cd58bb5" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
1..67
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.R46aa48cd58bb5&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="V46a7da91d08ef" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspD
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.V46a7da91d08ef&page=21586&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="Z46aa48cdf261c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Z46aa48cdf261c&page=21586&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Z46aa48ce4b0eb" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11111-MONOMER EcoCyc:EG11111-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A968 SwissModel:P0A968]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A968|UniProt:P0A968]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A968 Pfam:P0A968]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415401 RefSeq:NP_415401]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Z46aa48ce4b0eb&page=21586&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Q46a7da9622574" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21586.Q46a7da9622574&page=21586&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspC:Gene Product(s)

2010-10-29T20:11:59Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspC}}{{Tab|Gene|cspC}}{{Tab On|Gene Product(s)|cspC}}{{Tab|Expression|cspC}}{{Tab|Evolution|cspC}}{{Tab|On One Page|cspC}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aa7fc935f9e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspC
|-
!align=left {{table heading style}} |Synonyms
||
stress protein, member of the CspA-family<ref name='LIB:Riley_2006'/>, B1823<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
stress protein, member of the CspA family<ref name='LIB:EcoCyc10.6'/>; stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Multicopy suppressor of mukB; cold shock protein homolog constitutively expressed at 37C; affects rpoS and uspA expression<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.V46aa7fc935f9e&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="H46aa7fca420ea" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0030401
|
transcription antiterminator activity
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
PMID:16858726
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.H46aa7fca420ea&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="L46aa7fcd2dd34" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
accA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
aidB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-881486, EBI-883980 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluC 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yfiF 
|

|
PMID:15690043
|
Experiment(s):EBI-879643 
|-
|
Protein
|
yhiR 
|

|
PMID:15690043
|
Experiment(s):EBI-879643, EBI-883980 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplU 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplW 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsF 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsI 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rpsT 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rsmB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
gmr 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
ydaY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhbY 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yhiP 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yjdB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rluE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
accD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
yeeJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
creC 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
dnaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
entB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
glpK 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
hupB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
metR 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
prpD 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
putA 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rcsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
recN 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rfaJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
rhlE 
|

|
PMID:15690043
|
Experiment(s):EBI-883980 
|-
|
Protein
|
topA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
cpxR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
ycgE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140933 

|- class="tableEdit_footer"
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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="G46a8106fc3b60" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.G46a8106fc3b60&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="X46aa7fcf14843" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12204-MONOMER at EcoCyc]
<pre>MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG
PAAVNVTAI</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.401 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.X46aa7fcf14843&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="R46aa7fcf80476" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A9Y6#section_features UniProt:P0A9Y6]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.R46aa7fcf80476&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a81071b820f" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspC
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.Q46a81071b820f&page=23740&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="M46aa7fd043a81" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.M46aa7fd043a81&page=23740&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="I46aa7fd09f303" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12204-MONOMER EcoCyc:EG12204-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A9Y6 SwissModel:P0A9Y6]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A9Y6|UniProt:P0A9Y6]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A9Y6 Pfam:P0A9Y6]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416337 RefSeq:NP_416337]
|

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a810764524c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23740.U46a810764524c&page=23740&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]

cspB:Gene Product(s)

2010-10-29T20:07:57Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspB}}{{Tab|Gene|cspB}}{{Tab On|Gene Product(s)|cspB}}{{Tab|Expression|cspB}}{{Tab|Evolution|cspB}}{{Tab|On One Page|cspB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa6f310a14e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspB
|-
!align=left {{table heading style}} |Synonyms
||
Qin prophage; cold shock protein<ref name='LIB:Riley_2006'/>, B1557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
Qin prophage; cold shock protein<ref name='LIB:EcoCyc10.6'/>; Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>

Cold shock protein, Qin prophage; cold shock inducible<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46aa6f310a14e&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aa6f320d5e7" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011129
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003676
|
nucleic acid binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012156
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.I46aa6f320d5e7&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="M46aa6f328afe5" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
cspA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908, EBI-884189 
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879628 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879628, EBI-883908 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
perR 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
ydaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146, EBI-1140146 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yhcA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsC 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
thrA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
narZ 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rpsM 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
infB 
|

|
PMID:16606699
|
Experiment(s):EBI-1140146 
|-
|
Protein
|
yghW 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspE 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
cspG 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
eno 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
gltA 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883908 

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.M46aa6f328afe5&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="X46a8015c7232a" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.X46a8015c7232a&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aa6f347012b" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12203-MONOMER at EcoCyc]
<pre>MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK VTFSIESGAK
GPAAANVIIT D</pre>
|-
!align=left {{table heading style}} |Length
||
71
|-
!align=left {{table heading style}} |Mol. Wt
||
7.716 kDa
|-
!align=left {{table heading style}} |pI
||
7.3 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
6,990 (calc based on 1 Y, 1 W, and C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.N46aa6f347012b&page=23130&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="W46aa6f34d5292" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4..70
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.W46aa6f34d5292&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="U46a8015e2aaa4" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="D46aa6f358ad6c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.D46aa6f358ad6c&page=23130&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa6f35df5ad" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12203-MONOMER EcoCyc:EG12203-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36995 SwissModel:P36995]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36995|UniProt:P36995]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P36995 Pfam:P36995]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416075 RefSeq:NP_416075]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.P46aa6f35df5ad&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="U46a801628b11b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23130.U46a801628b11b&page=23130&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]
[[Category:Pfam:PF00313_!_\'Cold-shock\' DNA-binding domain]]
[[Category:RefGenome_Annotated_Gene]]

cspE:Gene Product(s)

2010-10-29T20:04:08Z

Snhales: Table edited by Snhales via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cspE}}{{Tab|Gene|cspE}}{{Tab On|Gene Product(s)|cspE}}{{Tab|Expression|cspE}}{{Tab|Evolution|cspE}}{{Tab|On One Page|cspE}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="X46aa3a133a23b" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CspE
|-
!align=left {{table heading style}} |Synonyms
||
DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0623<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GicA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CspE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
cold shock protein CspE<ref name='LIB:EcoCyc10.6'/>; transcription antiterminator and regulator of RNA stability<ref name='LIB:EcoCyc11.1'/>

Binds and melts RNA, involved in cold acclimation; binds ssDNA; high copy protects the chromosome from decondensation by camphor and increases DNA supercoiling; dimeric<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Z46aa3a1438a06" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005737
|
cytoplasm
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-0086
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006350
|
transcription
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0804
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002059
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0060567
|
negative regulation of transcription termination
|
PMID:10884409
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0003723
|
RNA binding
|
PMID:10476034
|
IDA: Inferred from Direct Assay
|

|
F
|
Figure 2
|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Z46aa3a1438a06&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="F46aa3a3209d8f" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
dnaN 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
gabT 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hflB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
hrpA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
pnp 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-879589, EBI-883848 
|-
|
Protein
|
secA 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rnr 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
ycbY 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
rluB 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
dcuR 
|

|
PMID:15690043
|
Experiment(s):EBI-879589 
|-
|
Protein
|
cspI 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
glmU 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hfq 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hupA 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
hyfG 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsJ 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rpsP 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
serS 
|

|
PMID:15690043
|
Experiment(s):EBI-883848 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoC 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ogrK 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ygbA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
yafO 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpoB 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
hchA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
uspG 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
torA 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
prs 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rplU 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
ulaF 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
rpsD 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 
|-
|
Protein
|
nrdI 
|

|
PMID:16606699
|
Experiment(s):EBI-1137461 

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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="Y46a7cbc2956ee" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.Y46a7cbc2956ee&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa3a33bdf55" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12179-MONOMER at EcoCyc]
<pre>MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG
PSAANVIAL</pre>
|-
!align=left {{table heading style}} |Length
||
69
|-
!align=left {{table heading style}} |Mol. Wt
||
7.463 kDa
|-
!align=left {{table heading style}} |pI
||
9.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
5,500 (calc based on Y, 1 W, and C residues)

|- class="tableEdit_footer"
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|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="G46aa3a3424157" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A972#section_features UniProt:P0A972]
|

|-
|
Domain
|
3..69
|
[http://pfam.janelia.org/family/PF00313 PF00313 'Cold-shock' DNA-binding domain]
|

|
PMID:19920124

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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a7cbc441703" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cspE
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="U46aa3a34baa49" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20966.U46aa3a34baa49&page=20966&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46aa3a3511611" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12179-MONOMER EcoCyc:EG12179-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A972 SwissModel:P0A972]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A972|UniProt:P0A972]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P0A972 Pfam:P0A972]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415156 RefSeq:NP_415156]
|

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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="L46a7cbc88ef1a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
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|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:RefGenome_Annotated_Gene]]