ompR:Evolution

2008-09-18T19:42:30Z

Sneeruk1: Table edited by Sneeruk1 via TableEdit

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|{{Sub}}[[#Homologs in Other Organisms|Homologs]]
|{{Sub}}[[#Families|Families]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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==Homologs in Other Organisms==
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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
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!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''
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* AT4G31920 (score: 1.000; bootstrap: 100%)
* AT2G01760 (score: 1.000; bootstrap: 100%)
* AT2G25180 (score: 0.521)
* AT3G16857 (score: 0.312)
* AT4G16110 (score: 0.186)
* AT5G49240 (score: 0.157)
* AT1G49190 (score: 0.149)
* AT3G62670 (score: 0.115)
* AT4G18020 (score: 0.115)
* AT5G07210 (score: 0.102)
* AT2G27070 (score: 0.098)
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From Inparanoid:20070104
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''Dictyostelium discoideum''
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* DDB0183884 (score: 1.000; bootstrap: 71%)
* DDB0191388 (score: 1.000; bootstrap: 62%)
* DDB0220512 (score: 0.106)
* DDB0231984 (score: 0.080)
* DDB0185194 (score: 0.077)
* DDB0187191 (score: 0.076)
* DDB0191306 (score: 0.075)
* DDB0204819 (score: 0.075)
* DDB0218392 (score: 0.066)
* DDB0218263 (score: 0.065)
* DDB0187593 (score: 0.065)
* DDB0185325 (score: 0.061)
* DDB0217795 (score: 0.060)
* DDB0220485 (score: 0.058)
* DDB0191407 (score: 0.058)
* DDB0188118 (score: 0.058)
* DDB0216671 (score: 0.056)
* DDB0206390 (score: 0.052)
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From Inparanoid:20070104
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''Oryza gramene''
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* Q6H805 (score: 1.000; bootstrap: 63%)
* Q94LW1 (score: 0.703)
* Q5SML5 (score: 0.284)
* Q6K8X6 (score: 0.277)
* Q67W50 (score: 0.231)
* Q948L2 (score: 0.203)
* Q7Y0W5 (score: 0.111)
* Q7Y0W3 (score: 0.111)
* Q7Y0W2 (score: 0.111)
* Q7Y0W4 (score: 0.108)
* Q6AU68 (score: 0.069)
* Q8H908 (score: 0.057)
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From Inparanoid:20070104
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''Saccharomyces cerevisiae''
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* YHR206W (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
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''Schizosaccharomyces pombe''
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* SPAC8C94 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
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''Shigella flexneri''
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OMPR
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From SHIGELLACYC
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''E. coli'' O157
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OMPR
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From ECOO157CYC
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''Staphylococcus aureus''
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ARLR belongs to OMPR family of response regulators

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===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417864&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]

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===Notes===

==Families==
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!Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00072 PFAM:PF00072]
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===Notes===

==Links==
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==References==
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<references/>
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__NOTOC__
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===Categories===
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[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

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ompR:Evolution