EcoliWiki - User contributions [en]

ftsZ:Gene Product(s)

2007-08-11T22:13:37Z

Plevin: /* Notes */

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<noinclude>{{TabsTop}}
{{Tab|Quickview|ftsZ}}{{Tab|Gene|ftsZ}}{{Tab On|Gene Product(s)|ftsZ}}{{Tab|Expression|ftsZ}}{{Tab|Evolution|ftsZ}}{{Tab|On One Page|ftsZ}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==


{|{{Prettytable}}
|-
!{{table heading style}} |Standard name
|
FtsZ product
|-
!{{table heading style}} |Synonyms
|
GTP-binding tubulin-like cell division protein product<ref name='LIB:Riley_2006'/>, B0095 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SulB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfiB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FtsZ product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!{{table heading style}} |Product description
|
essential cell division protein FtsZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!{{table heading style}} |EC number (for enzymes)
|
*
|-
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{{Product_nomenclature_help}}
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===Notes===

==Function==
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<big>'''Gene Ontology'''</big>


{|class = 'sortable' {{Prettytable}} id='152104'
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0000910
|
cytokinesis
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0005737
|
cytoplasm
|

|

|

|
C
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
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{{Product_GO_help}}

<big>'''Interactions'''</big>


{|class = 'sortable' {{Prettytable}} id='152105'
|- {{table heading style}}
!Partner Type!!Partner!!Notes
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19676.J46aa1b754be13&page=19676&pagename={{FULLPAGENAMEE}} edit table] || ||
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===Notes===
FtsZ is key a key player in [[septum formation]]

==Localization==


{|class = 'sortable' {{Prettytable}} id='152106'
|- {{table heading style}}
!Compartment!!Description!!Evidence!!Notes
|-
|
cytoplasm
|

|

|
From EcoCyc<ref name='LIB:EcoCyc11.1'/>
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===Notes===

==Structure and Physical Properties==
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<big>'''Physical Properties'''</big>


{|{{Prettytable}}
|-
!{{table heading style}} |Sequence
|
[http://biocyc.org/ECOLI/sequence-aa?object=EG10347-MONOMER at EcoCyc]
<pre>MFEPMELTND AVIKVIGVGG GGGNAVEHMV RERIEGVEFF AVNTDAQALR KTAVGQTIQI
GSGITKGLGA GANPEVGRNA ADEDRDALRA ALEGADMVFI AAGMGGGTGT GAAPVVAEVA
KDLGILTVAV VTKPFNFEGK KRMAFAEQGI TELSKHVDSL ITIPNDKLLK VLGRGISLLD
AFGAANDVLK GAVQGIAELI TRPGLMNVDF ADVRTVMSEM GYAMMGSGVA SGEDRAEEAA
EMAISSPLLE DIDLSGARGV LVNITAGFDL RLDEFETVGN TIRAFASDNA TVVIGTSLDP
DMNDELRVTV VATGIGMDKR PEITLVTNKQ VQQPVMDRYQ QHGMAPLTQE QKPVAKVVND
NAPQTAKEPD YLDIPAFLRK QAD</pre>
|-
!{{table heading style}} |Mol. Wt
|
40.32 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
|-
!{{table heading style}} |pI
|

|-
!{{table heading style}} |Extinction coefficient
|
4470 (calc based on 3 Y, 0 W, and 0 C residues)
|-
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{{Product_physical_properties_help}}

<big>'''Domains/Motifs/Modification Sites'''</big>


{|class = 'sortable' {{Prettytable}} id='152108'
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!Type!!Residues!!Description!!Notes
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<big>'''Structure'''</big>


{|class = 'sortable' {{Prettytable}} id='100817'
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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-class='sortbottom'
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===Notes===

==Gene Product Resources==
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{|class = 'sortable' {{Prettytable}} id='152109'
|- {{table_heading_style}}
!Resource type!!Source!!Notes/Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19676.C46aa1b78550f6&page=19676&pagename={{FULLPAGENAMEE}} edit table] || ||
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===Notes===

==Accessions in Other Databases==
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{|class = 'sortable' {{Prettytable}} id='152110'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10347-MONOMER EcoCyc:EG10347-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A9A6 SwissModel:P0A9A6]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.expasy.ch/cgi-bin/sprot-search-ac?P0A9A6 UniProt:P0A9A6]
|

|-
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00091 PFAM:PF00091]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414637 RefSeq:NP_414637]
|

|-
|
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
|
[http://salilab.org/modbase/searchbyid?databaseID=P0A9A6 ModBase:P0A9A6]
|

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===Notes===

==Links==
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{|class = 'sortable' {{Prettytable}} id='100818'
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!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19676.Z46a7311aef91b&page=19676&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Links_help}}

<noinclude>
==References==
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{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:GO:0000910_!_cytokinesis]][[Category:GO:0005737_!_cytoplasm]][[Category:Location:cytoplasm]]

galT:Evolution

2007-08-11T22:12:34Z

Plevin: /* Categories */

galT:Evolution

2007-08-11T22:12:09Z

Plevin: /* Categories */

PMID:8083177

2007-08-11T22:05:39Z

Plevin: New PMID: Page!

<protect>
{{RightTOC}}

 '''Lu, M and Kleckner, N''' (1994) Molecular cloning and characterization of the pgm gene encoding phosphoglucomutase of Escherichia coli.''J. Bacteriol.'' '''176''':5847-51

{|{{Prettytable}} align = 'center' width= '70%'
|-
|{{TableHeadingColor}} |'''Abstract''' || We report here the identification and characterization of pgm, a gene in Escherichia coli that encodes the enzyme phosphoglucomutase, specifically required for the catalysis of the interconversion of glucose 1-phosphate and glucose 6-phosphate. The predicted amino acid sequence of the pgm gene is highly conserved in E. coli, Acetobacter xylinum, Saccharomyces cerevisiae, rabbits, and humans. pgm deletion mutant strains are deficient in phosphoglucomutase activity.
</noinclude>
|-
|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8083177 PubMed]
|}
</protect>
==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
<protect>

{|class = 'sortable' {{Prettytable}} id='220251'
|- {{table heading style}}
!Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.T46be32b375666&page=0&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
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</protect>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==References==
{{RefHelp}}
<references/>

pgm:Gene

2007-08-11T22:03:25Z

Plevin: /* Notes */

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<noinclude>{{TabsTop}}
{{Tab|Quickview|pgm}}{{Tab On|Gene|pgm}}{{Tab|Gene Product(s)|pgm}}{{Tab|Expression|pgm}}{{Tab|Evolution|pgm}}{{Tab|On One Page|pgm}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
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{|{{Prettytable}}
|-
!{{table_heading_style}} |Standard name
|
''pgm''
|-
!{{table_heading_style}} |Mnemonic
|

|-
!{{table_heading_style}} |Synonyms
|
''ECK0676, b0688, JW0675, blu''<ref name='LIB:Riley_2006'/>
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11929.H46a9b68649ad9&page=11929&pagename={{FULLPAGENAMEE}} edit table]
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{{Gene_nomenclature_help}}
</protect>
===Notes===
Cloned and sequenced by Lu and Kleckner<ref name='PMID: 8083177'/>

==Location(s) and DNA Sequence==
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<protect>


{|class = 'sortable' {{Prettytable}} id='128987'
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
15.36 minutes 
|
MG1655: 712781..714421 {{GBrowseFigureByCoord|711781|715421|ecoli|MG1655}}
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12144 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:711781..715421 GBrowse(MG1655)]

|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:712781..714421&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG12144 EcoCyc Sequence Dump]
|-
|
W3110
|
 
|
W3110: 713980..715620 {{GBrowseFigureByCoord|712980|716620|ecoli_W3110|W3110}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:712980..716620 GBrowse(W3110)]
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:713980..715620&plugin_action=Go FASTA Dump]
|-class='sortbottom'
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{{Gene_location_help}}
</protect>
===Notes===

==Sequence Features==
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{|class = 'sortable' {{Prettytable}} id='128988'
|- {{table_heading_style}}
!Feature type!!Location!!Description
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{{Gene_sequence_features_help}}
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====Notes====

==Alleles and Phenotypes==
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{|class = 'sortable' {{Prettytable}} id='128989'
|- {{table_heading_style}}
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
Δpgm (Keio:JW0675)
|
deletion
|
deletion
|

|

|
[[PMID:16738554]]<ref name=PMID:16738554/>
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=107042 CGSC8761]<ref name='LIB:cgsc'/>
|

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{{Gene_alleles_help}}
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===Notes===

==Genetic Resources==
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{|class = 'sortable' {{Prettytable}} id='128990'
|- {{table_heading_style}}
!Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0675
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
[[PMID:16769691]]<ref name=PMID:16769691/>

Status:Clone OK

Primer 1:GCCGCAATCCACAATCGTGCAGG

Primer 2:CCCGCGTTTTTCAGAACTTCGCT
|-
|
[[asnB:Gene|asnB3057::Tn10]]
|
Linked marker
|
CAG18433 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39394 CGSC7349]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 66% <ref name='LIB:Nichols_linked_Tn'/>

Synonyms:zbf-3057::Tn10

The Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.
|-
|
[[nadA:Gene|nadA57::Tn10]]
|
Linked marker
|
CAG12147 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38017 CGSC7351]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 2% <ref name='LIB:Nichols_linked_Tn'/>
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{{Gene_resources_help}}
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===Notes===

==Accessions in Other Databases==
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{|class = 'sortable' {{Prettytable}} id='128991'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12144 EcoCyc:EG12144]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2065 EchoBASE:EB2065]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0688 EcoliGenExpDB:b0688]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C0775 ECOL199310CYC:C0775]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12144 EcoGene:EG12144]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=PGM ECOO157CYC:PGM]
|

|-
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/406 CGSC:406]
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{{Gene_accessions_help}}
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===Notes===

==Links==
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{{Links_help}}

<noinclude><protect>
==References==
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{{RefHelp}}
<references/>
__NOTOC__
</protect></noinclude>
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]