EcoliWiki - User contributions [en]

Sandbox

2008-09-04T01:25:59Z

NoPower: Table edited by NoPower via TableEdit

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only thing i remember
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being an issue with ie. it is not here.

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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
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abc
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def
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ghi
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jkl
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abc
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defgafad
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ghigs
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xx
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abc
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def
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ghi
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xx
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test
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test
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onetowoakd
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|-
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boo
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chrome is ridiculously fast
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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Z481aac3e14901&page=2&pagename={{FULLPAGENAMEE}}&type=0&template= edit table] || || ||
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this is testing the edit capabilities of 1.12.0

test of making template for a table
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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
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!|Gene Product!!Qualifier!!GO ID!!GO term name!!Aspect!!Reference!!Annotator Name!!Date
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==Cis-element page==
<protect>

{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"

|-
!align=left |Standard Name
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!align=left |Mnemonic
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!align=left |Synonyms
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!align=left |Function
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|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.P488e1902db3c8&page=2&pagename={{FULLPAGENAMEE}}&type=1&template= edit table] ||
|}
</protect>

==Location and DNA Sequence==
link to GBrowse map

==Alleles and Phenotypes==
add Alleles and Phenotypes table

==Genetic Resources==
add Genetic Resources table

==Accessions in Other Databases==
add Accessions table

==References==

Sandbox

2008-09-04T01:25:13Z

NoPower:

<protect>

{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
|-
!|testing!!the brower!!chrome

|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.F48bf38f9392ef&page=2&pagename={{FULLPAGENAMEE}}&type=0&template= edit table] || ||
|}
</protect>

<protect>

{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
|-
!|Replace these lines!!with Headings and Save!!to see a table!!this is column 4
|-
|
abc
|
def
|
ghi
|
jkl
|-
|
abc
|
defgafad
|
ghigs
|
xx
|-
|
abc
|
def
|
ghi
|
xx
|-
|
test
|
test
|
onetowoakd
|

|-
|
boo
|
chrome is ridiculously fast
|

|

|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Z481aac3e14901&page=2&pagename={{FULLPAGENAMEE}}&type=0&template= edit table] || || ||
|}
</protect>

this is testing the edit capabilities of 1.12.0

test of making template for a table
<protect>

{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
|- {{table_heading_style}}
!|Gene Product!!Qualifier!!GO ID!!GO term name!!Aspect!!Reference!!Annotator Name!!Date
|-
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|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.P4856ef5ce1e1c&page=2&pagename={{FULLPAGENAMEE}}&type=0&template=GO_Team_Annotation_Table edit table] || || || || || || ||
|}
</protect>

==Cis-element page==
<protect>

{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"

|-
!align=left |Standard Name
||

|-
!align=left |Mnemonic
||

|-
!align=left |Synonyms
||

|-
!align=left |Function
||

|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.P488e1902db3c8&page=2&pagename={{FULLPAGENAMEE}}&type=1&template= edit table] ||
|}
</protect>

==Location and DNA Sequence==
link to GBrowse map

==Alleles and Phenotypes==
add Alleles and Phenotypes table

==Genetic Resources==
add Genetic Resources table

==Accessions in Other Databases==
add Accessions table

==References==

pGPS2.1

2007-09-05T19:23:11Z

NoPower: /* Sequence */

==At a Glance==
[[Image:PGPS2.1.jpg|thumb|250px|right|Image of pGPS2.1]]
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|
Genome Priming System
|-
!{{table heading style}} |Origin of Replication
|
R6K
|-
!{{table heading style}} |Copy #
|

|-
!{{table heading style}} |Markers
|
tetracycline, chloramphenicol
|-
!{{table heading style}} |Link to Sequence
|
[http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/sequences/pgps2.1.txt NEB]
|-
!{{table heading style}} |Comments
|
The GPS-2 System includes two Transprimer transposons-one encodes kanamycin resistance and the other encodes chloramphenicol resistance.
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46deeb9253ab2&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
 
 

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources==
pGPS2.1 is isolated from E. coli BW23474

==References==
[http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/dna_sequences_maps.asp New England Biolabs]
<references/>

==Sequence==

1 GGTACCCTGT GAATGCGCAA ACCAACCCTT GGCAGAACAT ATCCATCGCG
51 TCCGCCATCT CCAGCAGCCG CACGCGGCGC ATCTCGGGCA GCGTTGGGTC
101 CTGGCCACGG GTGCGCATGA TCGTGCTCCT GTCGTTGAGG ACCCGGCTAG
151 GCTGGCGGGG TTGCCTTACT GGTTAGCAGA ATGAATCACC GATACGCGAG
201 CGAACGTGAA GCGACTGCTG CTGCAAAACG TCTGCGACCT GAGCAACAAC
251 ATGAATGGTC TTCGGTTTCC GTGTTTCGTA AAGTCTGGAA ACGCGGAAGT
301 CAGCGCCCTG CACCATTATG TTCCGGATCT ATGTCGGGTG CGGAGAAAGA
351 GGTAATGAAA TGGCAGATCC CTGGCTTGTT GTCCACAACC GTTAAACCTT
401 AAAAGCTTTA AAAGCCTTAT ATATTCTTTT TTTTCTTATA AAACTTAAAA
451 CCTTAGAGGC TATTTAAGTT GCTGATTTAT ATTAATTTTA TTGTTCAAAC
501 ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTT AGCCATGAGA
551 GCTTAGTACG TTAGCCATGA GGGTTTAGTT CGTTAAACAT GAGAGCTTAG
601 TACGTTAAAC ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTA
651 CTATCAACAG GTTGAACTGC TGATCTTCGG ATCTATGTCG GGTGCGGAGA
701 AAGAGGTAAT GAAATGGCAG ATCCCTGGCT TGTTGTCCAC AACCGTTAAA
751 CCTTAAAAGC TTTAAAAGCC TTATATATTC TTTTTTTTCT TATAAAACTT
801 AAAACCTTAG AGGCTATTTA AGTTGCTGAT TTATATTAAT TTTATTGTTC
851 AAACATGAGA GCTTAGTACG TGAAACATGA GAGCTTAGTA CGTTAGCCAT
901 GAGAGCTTAG TACGTTAGCC ATGAGGGTTT AGTTCGTTAA ACATGAGAGC
951 TTAGTACGTT AAACATGAGA GCTTAGTACG TGAAACATGA GAGCTTAGTA
1001 CGTACTATCA ACAGGTTGAA CTGCTGATCT TCGGATCTAT GTCGGGTGCG
1051 GAGAAAGAGG TAATGAAATG GCATCCGGAT CTGCATCGCA GGATGCTGCT
1101 GGCTACCCTG TGGAACACCT ACATCTGTAT TAACGAAGCA TTATTGAAGC
1151 ATTTATCAGG GTTATTGTCT CATGAGCGGA TACATATTTG AATGTATTTA
1201 GAAAAATAAA CAAATAGGGG TTCCGCGCAC ATTTCCCCGA AAAGTGCCAC
1251 CTGACGTCTA AGAAACCATT ATTATCATGA CATTAACCTA TAAAAATAGG
1301 CGTATCACGA GGCCCTTTCG TCTTCAAGAA TTCTCATGTT TGACAGCTTA
1351 TCATCGATAA GCTTTAATGC GGTAGTTTAT CACAGTTAAA TTGCTAACGC
1401 AGTCAGGCAC CGTGTATGAA ATCTAACAAT GCGCTCATCG TCATCCTCGG
1451 CACCGTCACC CTGGATGCTG TAGGCATAGG CTTGGTTATG CCGGTACTGC
1501 CGGGCCTCTT GCGGGATATC GTCCATTCCG ACAGCATCGC CAGTCACTAT
1551 GGCGTGCTGC TAGCGCTATA TGCGTTGATG CAATTTCTAT GCGCACCCGT
1601 TCTCGGAGCA CTGTCCGACC GCTTTGGCCG CCGCCCAGTC CTGCTCGCTT
1651 CGCTACTTGG AGCCACTATC GACTACGCGA TCATGGCGAC CACACCCGTC
1701 CTGTGGATCC TCTACGCCGG ACGCATCGTG GCCGGCATCA CCGGCGCCAC
1751 AGGTGCGGTT GCTGGCGCCT ATATCGCCGA CATCACCGAT GGGGAAGATC
1801 GGGCTCGCCA CTTCGGGCTC ATGAGCGCTT GTTTCGGCGT GGGTATGGTG
1851 GCAGGCCCCG TGGCCGGGGG ACTGTTGGGC GCCATCTCCT TGCATGCACC
1901 ATTCCTTGCG GCGGCGGTGC TCAACGGCCT CAACCTACTA CTGGGCTGCT
1951 TCCTAATGCA GGAGTCGCAT AAGGGAGAGC GTCGACCGAT GCCCTTGAGA
2001 GCCTTCAACC CAGTCAGCTC CTTCCGGTGG GCGCGGGGCA TGACTATCGT
2051 CGCCGCACTT ATGACTGTCT TCTTTATCAT GCAACTCGTA GGACAGGTGC
2101 CGGCAGCGCT CTGGGTCATT TTCGGCGAGG ACCGCTTTCG CTGGAGCGCG
2151 ACGATGATCG GCCTGTCGCT TGCGGTATTC GGAATCTTGC ACGCCCTCGC
2201 TCAAGCCTTC GTCACTGGTC CCGCCACCAA ACGTTTCGGC GAGAAGCAGG
2251 CCATTATCGC CGGCATGGCG GCCGACGCGC TGGGCTACGT CTTGCTGGCG
2301 TTCGCGACGC GAGGCTGGAT GGCCTTCCCC ATTATGATTC TTCTCGCTTC
2351 CGGCGGCATC GGGATGCCCG CGTTGCAGGC CATGCTGTCC AGGCAGGTAG
2401 ATGACGACCA TCAGGGACAG CTTCAAGGAT CGCTCGCGGC TCTTACCAGC
2451 CTAACTTCGA TCATTGGACC GCTGATCGTC ACGGCGATTT ATGCCGCCTC
2501 GGCGAGCACA TGGAACGGGT TGGCATGGAT TGTAGGCGCC GCCCTATACC
2551 TTGTCTGCCT CCCCGCGTTG CGTCGCGGTG CATGGAGCCG GGCCACCTCG
2601 ACCTGAATGG AAGCCGGCGG CACCTCGCTA ACGGATTCAC CACTCCAAGA
2651 ATTGGAGCCA ATCAATTCTT GCGGAGAACT GTGAATGCGC AAACCAACCC
2701 TTGGCAGAAC ATATCCATCG CGTCCGCCAT CTCCAGCAGC CGCACGCGGC
2751 GCATCTCGGG CAGCGTTGGG TCCTGGGCTG GCATTGACCC TGAGTGATTT
2801 TTCTCTGGTC CCGCCGCATC CATACCGCCA GTTGTTTACC CTCACAACGT
2851 TCCAGTAACC GGGCATGTTC ATCATCAGTA ACCCGTATCG TGAGCATCCT
2901 CTCTCGTTTC ATCGGTATCA TTACCCCCAT GAACAGAAAT CCCCCTTACA
2951 CGGAGGCATC AGTGACCAAA CAGGAAAAAA CCGCCCTTAA CATGGCCCGC
3001 TTTATCAGAA GCCAGACATT AACGCTTCTG GAGAAACTCA ACGAGCTGGA
3051 CGCGGATGAA CAGGCAGAGC TCTTACTGTC ATGCCATCCG TATGTGGGCG
3101 GACAATAAAG TCTTAAACTG AACAAAATAG ATCTAAACTA TGACAATAAA
3151 GTCTTAAACT AGACAGAATA GTTGTAAACT GAAATCAGTC CAGTTATGCT
3201 GTGAAAAAGC ATACTGGACT TTTGTTATGG CTAAAGCAAA CTCTTCATTT
3251 TCTGAAGTGC AAATTGCCCG TCGTATTAAA GAGGGGCGTG GGGTCGACGC
3301 GGCCGCTAAC TATAACGGTC CTAAGGTAGC GAGTTTAAAC GATATCGGAT
3351 CCAGGCGTTT AAGGGCACCA ATAACTGCCT TAAAAAAATT ACGCCCCGCC
3401 CTGCCACTCA TCGCAGTACT GTTGTAATTC ATTAAGCATT CTGCCGACAT
3451 GGAAGCCATC ACAAACGGCA TGATGAACCT GAATCGCCAG CGGCATCAGC
3501 ACCTTGTCGC CTTGCGTATA ATATTTGCCC ATGGTGAAAA CGGGGGCGAA
3551 GAAGTTGTCC ATATTGGCCA CGTTTAAATC AAAACTGGTG AAACTCACCC
3601 AGGGATTGGC TGAGACGAAA AACATATTCT CAATAAACCC TTTAGGGAAA
3651 TAGGCCAGGT TTTCACCGTA ACACGCCACA TCTTGCGAAT ATATGTGTAG
3701 AAACTGCCGG AAATCGTCGT GGTATTCACT CCAGAGCGAT GAAAACGTTT
3751 CAGTTTGCTC ATGGAAAACG GTGTAACAAG GGTGAACACT ATCCCATATC
3801 ACCAGCTCAC CGTCTTTCAT TGCCATACGG AATTCCGGAT GAGCATTCAT
3851 CAGGCGGGCA AGAATGTGAA TAAAGGCCGG ATAAAACTTG TGCTTATTTT
3901 TCTTTACGGT CTTTAAAAAG GCCGTAATAT CCAGCTGAAC GGTCTGGTTA
3951 TAGGTACATT GAGCAACTGA CTGAAATGCC TCAAAATGTT CTTTACGATG
4001 CCATTGGGAT ATATCAACGG TGGTATATCC AGTGATTTTT TTCTCCATTT
4051 TAGCTTCCTT AGCTCCTGAA AATCTCGATA ACTCAAAAAA TACGCCCGGT
4101 AGTGATCTTA TTTCATTATG GTGAAAGTTG GAACCTCTTA CGTGCCGATC
4151 AACGTCTCAT TTTCGCCAAA AGTTGGCCCA GGGCTTCCCG GTATCAACAG
4201 GGACACCAGG ATTTATTTAT TCTGCGAAGT GATCTTCCGT CACAGGTATG
4251 GATCCGATAT CATTTAAATC TAGGGATAAC AGGGTAATAC TAGTGTCGAC
4301 CAACCAGATA AGTGAAATCT AGTTCCAAAC TATTTTGTCA TTTTTAATTT
4351 TCGTATTAGC TTACGACGCT ACACCCAGTT CCCATCTATT TTGTCACTCT
4401 TCCCTAAATA ATCCTTAAAA ACTCCATTTC CACCCCTCCC AGTTCCCAAC
4451 TATTTTGTCC GCCCACACCG TAAGATGCTT TTCTGTGACT

__NOTOC__

[[Category:Plasmids]]

pGPS2.1

2007-09-05T19:22:18Z

NoPower: /* Sequence */

==At a Glance==
[[Image:PGPS2.1.jpg|thumb|250px|right|Image of pGPS2.1]]
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|
Genome Priming System
|-
!{{table heading style}} |Origin of Replication
|
R6K
|-
!{{table heading style}} |Copy #
|

|-
!{{table heading style}} |Markers
|
tetracycline, chloramphenicol
|-
!{{table heading style}} |Link to Sequence
|
[http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/sequences/pgps2.1.txt NEB]
|-
!{{table heading style}} |Comments
|
The GPS-2 System includes two Transprimer transposons-one encodes kanamycin resistance and the other encodes chloramphenicol resistance.
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46deeb9253ab2&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
 
 

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources==
pGPS2.1 is isolated from E. coli BW23474

==References==
[http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/dna_sequences_maps.asp New England Biolabs]
<references/>

==Sequence==

1 GGTACCCTGT GAATGCGCAA ACCAACCCTT GGCAGAACAT ATCCATCGCG

51 TCCGCCATCT CCAGCAGCCG CACGCGGCGC ATCTCGGGCA GCGTTGGGTC

101 CTGGCCACGG GTGCGCATGA TCGTGCTCCT GTCGTTGAGG ACCCGGCTAG

151 GCTGGCGGGG TTGCCTTACT GGTTAGCAGA ATGAATCACC GATACGCGAG

201 CGAACGTGAA GCGACTGCTG CTGCAAAACG TCTGCGACCT GAGCAACAAC

251 ATGAATGGTC TTCGGTTTCC GTGTTTCGTA AAGTCTGGAA ACGCGGAAGT

301 CAGCGCCCTG CACCATTATG TTCCGGATCT ATGTCGGGTG CGGAGAAAGA

351 GGTAATGAAA TGGCAGATCC CTGGCTTGTT GTCCACAACC GTTAAACCTT

401 AAAAGCTTTA AAAGCCTTAT ATATTCTTTT TTTTCTTATA AAACTTAAAA

451 CCTTAGAGGC TATTTAAGTT GCTGATTTAT ATTAATTTTA TTGTTCAAAC

501 ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTT AGCCATGAGA

551 GCTTAGTACG TTAGCCATGA GGGTTTAGTT CGTTAAACAT GAGAGCTTAG

601 TACGTTAAAC ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTA

651 CTATCAACAG GTTGAACTGC TGATCTTCGG ATCTATGTCG GGTGCGGAGA

701 AAGAGGTAAT GAAATGGCAG ATCCCTGGCT TGTTGTCCAC AACCGTTAAA

751 CCTTAAAAGC TTTAAAAGCC TTATATATTC TTTTTTTTCT TATAAAACTT

801 AAAACCTTAG AGGCTATTTA AGTTGCTGAT TTATATTAAT TTTATTGTTC

851 AAACATGAGA GCTTAGTACG TGAAACATGA GAGCTTAGTA CGTTAGCCAT

901 GAGAGCTTAG TACGTTAGCC ATGAGGGTTT AGTTCGTTAA ACATGAGAGC

951 TTAGTACGTT AAACATGAGA GCTTAGTACG TGAAACATGA GAGCTTAGTA

1001 CGTACTATCA ACAGGTTGAA CTGCTGATCT TCGGATCTAT GTCGGGTGCG

1051 GAGAAAGAGG TAATGAAATG GCATCCGGAT CTGCATCGCA GGATGCTGCT

1101 GGCTACCCTG TGGAACACCT ACATCTGTAT TAACGAAGCA TTATTGAAGC

1151 ATTTATCAGG GTTATTGTCT CATGAGCGGA TACATATTTG AATGTATTTA

1201 GAAAAATAAA CAAATAGGGG TTCCGCGCAC ATTTCCCCGA AAAGTGCCAC

1251 CTGACGTCTA AGAAACCATT ATTATCATGA CATTAACCTA TAAAAATAGG

1301 CGTATCACGA GGCCCTTTCG TCTTCAAGAA TTCTCATGTT TGACAGCTTA

1351 TCATCGATAA GCTTTAATGC GGTAGTTTAT CACAGTTAAA TTGCTAACGC

1401 AGTCAGGCAC CGTGTATGAA ATCTAACAAT GCGCTCATCG TCATCCTCGG

1451 CACCGTCACC CTGGATGCTG TAGGCATAGG CTTGGTTATG CCGGTACTGC

1501 CGGGCCTCTT GCGGGATATC GTCCATTCCG ACAGCATCGC CAGTCACTAT

1551 GGCGTGCTGC TAGCGCTATA TGCGTTGATG CAATTTCTAT GCGCACCCGT

1601 TCTCGGAGCA CTGTCCGACC GCTTTGGCCG CCGCCCAGTC CTGCTCGCTT

1651 CGCTACTTGG AGCCACTATC GACTACGCGA TCATGGCGAC CACACCCGTC

1701 CTGTGGATCC TCTACGCCGG ACGCATCGTG GCCGGCATCA CCGGCGCCAC

1751 AGGTGCGGTT GCTGGCGCCT ATATCGCCGA CATCACCGAT GGGGAAGATC

1801 GGGCTCGCCA CTTCGGGCTC ATGAGCGCTT GTTTCGGCGT GGGTATGGTG

1851 GCAGGCCCCG TGGCCGGGGG ACTGTTGGGC GCCATCTCCT TGCATGCACC

1901 ATTCCTTGCG GCGGCGGTGC TCAACGGCCT CAACCTACTA CTGGGCTGCT

1951 TCCTAATGCA GGAGTCGCAT AAGGGAGAGC GTCGACCGAT GCCCTTGAGA

2001 GCCTTCAACC CAGTCAGCTC CTTCCGGTGG GCGCGGGGCA TGACTATCGT

2051 CGCCGCACTT ATGACTGTCT TCTTTATCAT GCAACTCGTA GGACAGGTGC

2101 CGGCAGCGCT CTGGGTCATT TTCGGCGAGG ACCGCTTTCG CTGGAGCGCG

2151 ACGATGATCG GCCTGTCGCT TGCGGTATTC GGAATCTTGC ACGCCCTCGC

2201 TCAAGCCTTC GTCACTGGTC CCGCCACCAA ACGTTTCGGC GAGAAGCAGG

2251 CCATTATCGC CGGCATGGCG GCCGACGCGC TGGGCTACGT CTTGCTGGCG

2301 TTCGCGACGC GAGGCTGGAT GGCCTTCCCC ATTATGATTC TTCTCGCTTC

2351 CGGCGGCATC GGGATGCCCG CGTTGCAGGC CATGCTGTCC AGGCAGGTAG

2401 ATGACGACCA TCAGGGACAG CTTCAAGGAT CGCTCGCGGC TCTTACCAGC

2451 CTAACTTCGA TCATTGGACC GCTGATCGTC ACGGCGATTT ATGCCGCCTC

2501 GGCGAGCACA TGGAACGGGT TGGCATGGAT TGTAGGCGCC GCCCTATACC

2551 TTGTCTGCCT CCCCGCGTTG CGTCGCGGTG CATGGAGCCG GGCCACCTCG

2601 ACCTGAATGG AAGCCGGCGG CACCTCGCTA ACGGATTCAC CACTCCAAGA

2651 ATTGGAGCCA ATCAATTCTT GCGGAGAACT GTGAATGCGC AAACCAACCC

2701 TTGGCAGAAC ATATCCATCG CGTCCGCCAT CTCCAGCAGC CGCACGCGGC

2751 GCATCTCGGG CAGCGTTGGG TCCTGGGCTG GCATTGACCC TGAGTGATTT

2801 TTCTCTGGTC CCGCCGCATC CATACCGCCA GTTGTTTACC CTCACAACGT

2851 TCCAGTAACC GGGCATGTTC ATCATCAGTA ACCCGTATCG TGAGCATCCT

2901 CTCTCGTTTC ATCGGTATCA TTACCCCCAT GAACAGAAAT CCCCCTTACA

2951 CGGAGGCATC AGTGACCAAA CAGGAAAAAA CCGCCCTTAA CATGGCCCGC

3001 TTTATCAGAA GCCAGACATT AACGCTTCTG GAGAAACTCA ACGAGCTGGA

3051 CGCGGATGAA CAGGCAGAGC TCTTACTGTC ATGCCATCCG TATGTGGGCG

3101 GACAATAAAG TCTTAAACTG AACAAAATAG ATCTAAACTA TGACAATAAA

3151 GTCTTAAACT AGACAGAATA GTTGTAAACT GAAATCAGTC CAGTTATGCT

3201 GTGAAAAAGC ATACTGGACT TTTGTTATGG CTAAAGCAAA CTCTTCATTT

3251 TCTGAAGTGC AAATTGCCCG TCGTATTAAA GAGGGGCGTG GGGTCGACGC

3301 GGCCGCTAAC TATAACGGTC CTAAGGTAGC GAGTTTAAAC GATATCGGAT

3351 CCAGGCGTTT AAGGGCACCA ATAACTGCCT TAAAAAAATT ACGCCCCGCC

3401 CTGCCACTCA TCGCAGTACT GTTGTAATTC ATTAAGCATT CTGCCGACAT

3451 GGAAGCCATC ACAAACGGCA TGATGAACCT GAATCGCCAG CGGCATCAGC

3501 ACCTTGTCGC CTTGCGTATA ATATTTGCCC ATGGTGAAAA CGGGGGCGAA

3551 GAAGTTGTCC ATATTGGCCA CGTTTAAATC AAAACTGGTG AAACTCACCC

3601 AGGGATTGGC TGAGACGAAA AACATATTCT CAATAAACCC TTTAGGGAAA

3651 TAGGCCAGGT TTTCACCGTA ACACGCCACA TCTTGCGAAT ATATGTGTAG

3701 AAACTGCCGG AAATCGTCGT GGTATTCACT CCAGAGCGAT GAAAACGTTT

3751 CAGTTTGCTC ATGGAAAACG GTGTAACAAG GGTGAACACT ATCCCATATC

3801 ACCAGCTCAC CGTCTTTCAT TGCCATACGG AATTCCGGAT GAGCATTCAT

3851 CAGGCGGGCA AGAATGTGAA TAAAGGCCGG ATAAAACTTG TGCTTATTTT

3901 TCTTTACGGT CTTTAAAAAG GCCGTAATAT CCAGCTGAAC GGTCTGGTTA

3951 TAGGTACATT GAGCAACTGA CTGAAATGCC TCAAAATGTT CTTTACGATG

4001 CCATTGGGAT ATATCAACGG TGGTATATCC AGTGATTTTT TTCTCCATTT

4051 TAGCTTCCTT AGCTCCTGAA AATCTCGATA ACTCAAAAAA TACGCCCGGT

4101 AGTGATCTTA TTTCATTATG GTGAAAGTTG GAACCTCTTA CGTGCCGATC

4151 AACGTCTCAT TTTCGCCAAA AGTTGGCCCA GGGCTTCCCG GTATCAACAG

4201 GGACACCAGG ATTTATTTAT TCTGCGAAGT GATCTTCCGT CACAGGTATG

4251 GATCCGATAT CATTTAAATC TAGGGATAAC AGGGTAATAC TAGTGTCGAC

4301 CAACCAGATA AGTGAAATCT AGTTCCAAAC TATTTTGTCA TTTTTAATTT

4351 TCGTATTAGC TTACGACGCT ACACCCAGTT CCCATCTATT TTGTCACTCT

4401 TCCCTAAATA ATCCTTAAAA ACTCCATTTC CACCCCTCCC AGTTCCCAAC

4451 TATTTTGTCC GCCCACACCG TAAGATGCTT TTCTGTGACT
</dna_display>

__NOTOC__

[[Category:Plasmids]]

pGPS2.1

2007-09-05T19:20:59Z

NoPower: /* Sequence */

==At a Glance==
[[Image:PGPS2.1.jpg|thumb|250px|right|Image of pGPS2.1]]
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|
Genome Priming System
|-
!{{table heading style}} |Origin of Replication
|
R6K
|-
!{{table heading style}} |Copy #
|

|-
!{{table heading style}} |Markers
|
tetracycline, chloramphenicol
|-
!{{table heading style}} |Link to Sequence
|
[http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/sequences/pgps2.1.txt NEB]
|-
!{{table heading style}} |Comments
|
The GPS-2 System includes two Transprimer transposons-one encodes kanamycin resistance and the other encodes chloramphenicol resistance.
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46deeb9253ab2&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
 
 

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources==
pGPS2.1 is isolated from E. coli BW23474

==References==
[http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/dna_sequences_maps.asp New England Biolabs]
<references/>

==Sequence==
<dna_display>
1 GGTACCCTGT GAATGCGCAA ACCAACCCTT GGCAGAACAT ATCCATCGCG

51 TCCGCCATCT CCAGCAGCCG CACGCGGCGC ATCTCGGGCA GCGTTGGGTC

101 CTGGCCACGG GTGCGCATGA TCGTGCTCCT GTCGTTGAGG ACCCGGCTAG

151 GCTGGCGGGG TTGCCTTACT GGTTAGCAGA ATGAATCACC GATACGCGAG

201 CGAACGTGAA GCGACTGCTG CTGCAAAACG TCTGCGACCT GAGCAACAAC

251 ATGAATGGTC TTCGGTTTCC GTGTTTCGTA AAGTCTGGAA ACGCGGAAGT

301 CAGCGCCCTG CACCATTATG TTCCGGATCT ATGTCGGGTG CGGAGAAAGA

351 GGTAATGAAA TGGCAGATCC CTGGCTTGTT GTCCACAACC GTTAAACCTT

401 AAAAGCTTTA AAAGCCTTAT ATATTCTTTT TTTTCTTATA AAACTTAAAA

451 CCTTAGAGGC TATTTAAGTT GCTGATTTAT ATTAATTTTA TTGTTCAAAC

501 ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTT AGCCATGAGA

551 GCTTAGTACG TTAGCCATGA GGGTTTAGTT CGTTAAACAT GAGAGCTTAG

601 TACGTTAAAC ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTA

651 CTATCAACAG GTTGAACTGC TGATCTTCGG ATCTATGTCG GGTGCGGAGA

701 AAGAGGTAAT GAAATGGCAG ATCCCTGGCT TGTTGTCCAC AACCGTTAAA

751 CCTTAAAAGC TTTAAAAGCC TTATATATTC TTTTTTTTCT TATAAAACTT

801 AAAACCTTAG AGGCTATTTA AGTTGCTGAT TTATATTAAT TTTATTGTTC

851 AAACATGAGA GCTTAGTACG TGAAACATGA GAGCTTAGTA CGTTAGCCAT

901 GAGAGCTTAG TACGTTAGCC ATGAGGGTTT AGTTCGTTAA ACATGAGAGC

951 TTAGTACGTT AAACATGAGA GCTTAGTACG TGAAACATGA GAGCTTAGTA

1001 CGTACTATCA ACAGGTTGAA CTGCTGATCT TCGGATCTAT GTCGGGTGCG

1051 GAGAAAGAGG TAATGAAATG GCATCCGGAT CTGCATCGCA GGATGCTGCT

1101 GGCTACCCTG TGGAACACCT ACATCTGTAT TAACGAAGCA TTATTGAAGC

1151 ATTTATCAGG GTTATTGTCT CATGAGCGGA TACATATTTG AATGTATTTA

1201 GAAAAATAAA CAAATAGGGG TTCCGCGCAC ATTTCCCCGA AAAGTGCCAC

1251 CTGACGTCTA AGAAACCATT ATTATCATGA CATTAACCTA TAAAAATAGG

1301 CGTATCACGA GGCCCTTTCG TCTTCAAGAA TTCTCATGTT TGACAGCTTA

1351 TCATCGATAA GCTTTAATGC GGTAGTTTAT CACAGTTAAA TTGCTAACGC

1401 AGTCAGGCAC CGTGTATGAA ATCTAACAAT GCGCTCATCG TCATCCTCGG

1451 CACCGTCACC CTGGATGCTG TAGGCATAGG CTTGGTTATG CCGGTACTGC

1501 CGGGCCTCTT GCGGGATATC GTCCATTCCG ACAGCATCGC CAGTCACTAT

1551 GGCGTGCTGC TAGCGCTATA TGCGTTGATG CAATTTCTAT GCGCACCCGT

1601 TCTCGGAGCA CTGTCCGACC GCTTTGGCCG CCGCCCAGTC CTGCTCGCTT

1651 CGCTACTTGG AGCCACTATC GACTACGCGA TCATGGCGAC CACACCCGTC

1701 CTGTGGATCC TCTACGCCGG ACGCATCGTG GCCGGCATCA CCGGCGCCAC

1751 AGGTGCGGTT GCTGGCGCCT ATATCGCCGA CATCACCGAT GGGGAAGATC

1801 GGGCTCGCCA CTTCGGGCTC ATGAGCGCTT GTTTCGGCGT GGGTATGGTG

1851 GCAGGCCCCG TGGCCGGGGG ACTGTTGGGC GCCATCTCCT TGCATGCACC

1901 ATTCCTTGCG GCGGCGGTGC TCAACGGCCT CAACCTACTA CTGGGCTGCT

1951 TCCTAATGCA GGAGTCGCAT AAGGGAGAGC GTCGACCGAT GCCCTTGAGA

2001 GCCTTCAACC CAGTCAGCTC CTTCCGGTGG GCGCGGGGCA TGACTATCGT

2051 CGCCGCACTT ATGACTGTCT TCTTTATCAT GCAACTCGTA GGACAGGTGC

2101 CGGCAGCGCT CTGGGTCATT TTCGGCGAGG ACCGCTTTCG CTGGAGCGCG

2151 ACGATGATCG GCCTGTCGCT TGCGGTATTC GGAATCTTGC ACGCCCTCGC

2201 TCAAGCCTTC GTCACTGGTC CCGCCACCAA ACGTTTCGGC GAGAAGCAGG

2251 CCATTATCGC CGGCATGGCG GCCGACGCGC TGGGCTACGT CTTGCTGGCG

2301 TTCGCGACGC GAGGCTGGAT GGCCTTCCCC ATTATGATTC TTCTCGCTTC

2351 CGGCGGCATC GGGATGCCCG CGTTGCAGGC CATGCTGTCC AGGCAGGTAG

2401 ATGACGACCA TCAGGGACAG CTTCAAGGAT CGCTCGCGGC TCTTACCAGC

2451 CTAACTTCGA TCATTGGACC GCTGATCGTC ACGGCGATTT ATGCCGCCTC

2501 GGCGAGCACA TGGAACGGGT TGGCATGGAT TGTAGGCGCC GCCCTATACC

2551 TTGTCTGCCT CCCCGCGTTG CGTCGCGGTG CATGGAGCCG GGCCACCTCG

2601 ACCTGAATGG AAGCCGGCGG CACCTCGCTA ACGGATTCAC CACTCCAAGA

2651 ATTGGAGCCA ATCAATTCTT GCGGAGAACT GTGAATGCGC AAACCAACCC

2701 TTGGCAGAAC ATATCCATCG CGTCCGCCAT CTCCAGCAGC CGCACGCGGC

2751 GCATCTCGGG CAGCGTTGGG TCCTGGGCTG GCATTGACCC TGAGTGATTT

2801 TTCTCTGGTC CCGCCGCATC CATACCGCCA GTTGTTTACC CTCACAACGT

2851 TCCAGTAACC GGGCATGTTC ATCATCAGTA ACCCGTATCG TGAGCATCCT

2901 CTCTCGTTTC ATCGGTATCA TTACCCCCAT GAACAGAAAT CCCCCTTACA

2951 CGGAGGCATC AGTGACCAAA CAGGAAAAAA CCGCCCTTAA CATGGCCCGC

3001 TTTATCAGAA GCCAGACATT AACGCTTCTG GAGAAACTCA ACGAGCTGGA

3051 CGCGGATGAA CAGGCAGAGC TCTTACTGTC ATGCCATCCG TATGTGGGCG

3101 GACAATAAAG TCTTAAACTG AACAAAATAG ATCTAAACTA TGACAATAAA

3151 GTCTTAAACT AGACAGAATA GTTGTAAACT GAAATCAGTC CAGTTATGCT

3201 GTGAAAAAGC ATACTGGACT TTTGTTATGG CTAAAGCAAA CTCTTCATTT

3251 TCTGAAGTGC AAATTGCCCG TCGTATTAAA GAGGGGCGTG GGGTCGACGC

3301 GGCCGCTAAC TATAACGGTC CTAAGGTAGC GAGTTTAAAC GATATCGGAT

3351 CCAGGCGTTT AAGGGCACCA ATAACTGCCT TAAAAAAATT ACGCCCCGCC

3401 CTGCCACTCA TCGCAGTACT GTTGTAATTC ATTAAGCATT CTGCCGACAT

3451 GGAAGCCATC ACAAACGGCA TGATGAACCT GAATCGCCAG CGGCATCAGC

3501 ACCTTGTCGC CTTGCGTATA ATATTTGCCC ATGGTGAAAA CGGGGGCGAA

3551 GAAGTTGTCC ATATTGGCCA CGTTTAAATC AAAACTGGTG AAACTCACCC

3601 AGGGATTGGC TGAGACGAAA AACATATTCT CAATAAACCC TTTAGGGAAA

3651 TAGGCCAGGT TTTCACCGTA ACACGCCACA TCTTGCGAAT ATATGTGTAG

3701 AAACTGCCGG AAATCGTCGT GGTATTCACT CCAGAGCGAT GAAAACGTTT

3751 CAGTTTGCTC ATGGAAAACG GTGTAACAAG GGTGAACACT ATCCCATATC

3801 ACCAGCTCAC CGTCTTTCAT TGCCATACGG AATTCCGGAT GAGCATTCAT
3851 CAGGCGGGCA AGAATGTGAA TAAAGGCCGG ATAAAACTTG TGCTTATTTT
3901 TCTTTACGGT CTTTAAAAAG GCCGTAATAT CCAGCTGAAC GGTCTGGTTA
3951 TAGGTACATT GAGCAACTGA CTGAAATGCC TCAAAATGTT CTTTACGATG
4001 CCATTGGGAT ATATCAACGG TGGTATATCC AGTGATTTTT TTCTCCATTT
4051 TAGCTTCCTT AGCTCCTGAA AATCTCGATA ACTCAAAAAA TACGCCCGGT
4101 AGTGATCTTA TTTCATTATG GTGAAAGTTG GAACCTCTTA CGTGCCGATC
4151 AACGTCTCAT TTTCGCCAAA AGTTGGCCCA GGGCTTCCCG GTATCAACAG
4201 GGACACCAGG ATTTATTTAT TCTGCGAAGT GATCTTCCGT CACAGGTATG
4251 GATCCGATAT CATTTAAATC TAGGGATAAC AGGGTAATAC TAGTGTCGAC
4301 CAACCAGATA AGTGAAATCT AGTTCCAAAC TATTTTGTCA TTTTTAATTT
4351 TCGTATTAGC TTACGACGCT ACACCCAGTT CCCATCTATT TTGTCACTCT
4401 TCCCTAAATA ATCCTTAAAA ACTCCATTTC CACCCCTCCC AGTTCCCAAC
4451 TATTTTGTCC GCCCACACCG TAAGATGCTT TTCTGTGACT
</dna_display>

__NOTOC__

[[Category:Plasmids]]

pMAL-c4G

2007-09-05T19:19:24Z

NoPower:

==At a Glance {{HelpIcon|Help:Plasmid}}==
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|
Cloning
|-
!{{table heading style}} |Origin
|

|-
!{{table heading style}} |Copy #
|

|-
!{{table heading style}} |Markers
|

|-
!{{table heading style}} |Link to Sequence
|

|-
!{{table heading style}} |Comments
|

|-
!{{table heading style}} |References
|

|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.I46dc4df6df37b&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
 
 
==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources==
NEB 5-alpha Competent E. coli (pMAL-c4G)

==References==
{{RefHelp}}
<references/>

==Sequence==
1 CCGACACCAT CGAATGGTGC AAAACCTTTC GCGGTATGGC ATGATAGCGC
51 CCGGAAGAGA GTCAATTCAG GGTGGTGAAT GTGAAACCAG TAACGTTATA
101 CGATGTCGCA GAGTATGCCG GTGTCTCTTA TCAGACCGTT TCCCGCGTGG
151 TGAACCAGGC CAGCCACGTT TCTGCGAAAA CGCGGGAAAA AGTGGAAGCG
201 GCGATGGCGG AGCTGAATTA CATTCCCAAC CGCGTGGCAC AACAACTGGC
251 GGGCAAACAG TCGTTGCTGA TTGGCGTTGC CACCTCCAGT CTGGCCCTGC
301 ACGCGCCGTC GCAAATTGTC GCGGCGATTA AATCTCGCGC CGATCAACTG
351 GGTGCCAGCG TGGTGGTGTC GATGGTAGAA CGAAGCGGCG TCGAAGCCTG
401 TAAAGCGGCG GTGCACAATC TTCTCGCGCA ACGCGTCAGT GGGCTGATCA
451 TTAACTATCC GCTGGATGAC CAGGATGCCA TTGCTGTGGA AGCTGCCTGC
501 ACTAATGTTC CGGCGTTATT TCTTGATGTC TCTGACCAGA CACCCATCAA
551 CAGTATTATT TTCTCCCATG AAGACGGTAC GCGACTGGGC GTGGAGCATC
601 TGGTCGCATT GGGTCACCAG CAAATCGCGC TGTTAGCGGG CCCATTAAGT
651 TCTGTCTCGG CGCGTCTGCG TCTGGCTGGC TGGCATAAAT ATCTCACTCG
701 CAATCAAATT CAGCCGATAG CGGAACGGGA AGGCGACTGG AGTGCCATGT
751 CCGGTTTTCA ACAAACCATG CAAATGCTGA ATGAGGGCAT CGTTCCCACT
801 GCGATGCTGG TTGCCAACGA TCAGATGGCG CTGGGCGCAA TGCGCGCCAT
851 TACCGAGTCC GGGCTGCGCG TTGGTGCGGA TATCTCGGTA GTGGGATACG
901 ACGATACCGA AGACAGCTCA TGTTATATCC CGCCGTTAAC CACCATCAAA
951 CAGGATTTTC GCCTGCTGGG GCAAACCAGC GTGGACCGCT TGCTGCAACT
1001 CTCTCAGGGC CAGGCGGTGA AGGGCAATCA GCTGTTGCCC GTCTCACTGG
1051 TGAAAAGAAA AACCACCCTG GCGCCCAATA CGCAAACCGC CTCTCCCCGC
1101 GCGTTGGCCG ATTCATTAAT GCAGCTGGCA CGACAGGTTT CCCGACTGGA
1151 AAGCGGGCAG TGAGCGCAAC GCAATTAATG TAAGTTAGCT CACTCATTAG
1201 GCACAATTCT CATGTTTGAC AGCTTATCAT CGACTGCACG GTGCACCAAT
1251 GCTTCTGGCG TCAGGCAGCC ATCGGAAGCT GTGGTATGGC TGTGCAGGTC
1301 GTAAATCACT GCATAATTCG TGTCGCTCAA GGCGCACTCC CGTTCTGGAT
1351 AATGTTTTTT GCGCCGACAT CATAACGGTT CTGGCAAATA TTCTGAAATG
1401 AGCTGTTGAC AATTAATCAT CGGCTCGTAT AATGTGTGGA ATTGTGAGCG
1451 GATAACAATT TCACACAGGA AACAGCCAGT CCGTTTAGGT GTTTTCACGA
1501 GCACTTCACC AACAAGGACC ATAGCATATG AAAATCGAAG AAGGTAAACT
1551 GGTAATCTGG ATTAACGGCG ATAAAGGCTA TAACGGTCTC GCTGAAGTCG
1601 GTAAGAAATT CGAGAAAGAT ACCGGAATTA AAGTCACCGT TGAGCATCCG
1651 GATAAACTGG AAGAGAAATT CCCACAGGTT GCGGCAACTG GCGATGGCCC
1701 TGACATTATC TTCTGGGCAC ACGACCGCTT TGGTGGCTAC GCTCAATCTG
1751 GCCTGTTGGC TGAAATCACC CCGGACAAAG CGTTCCAGGA CAAGCTGTAT
1801 CCGTTTACCT GGGATGCCGT ACGTTACAAC GGCAAGCTGA TTGCTTACCC
1851 GATCGCTGTT GAAGCGTTAT CGCTGATTTA TAACAAAGAT CTGCTGCCGA
1901 ACCCGCCAAA AACCTGGGAA GAGATCCCGG CGCTGGATAA AGAACTGAAA
1951 GCGAAAGGTA AGAGCGCGCT GATGTTCAAC CTGCAAGAAC CGTACTTCAC
2001 CTGGCCGCTG ATTGCTGCTG ACGGGGGTTA TGCGTTCAAG TATGAAAACG
2051 GCAAGTACGA CATTAAAGAC GTGGGCGTGG ATAACGCTGG CGCGAAAGCG
2101 GGTCTGACCT TCCTGGTTGA CCTGATTAAA AACAAACACA TGAATGCAGA
2151 CACCGATTAC TCCATCGCAG AAGCTGCCTT TAATAAAGGC GAAACAGCGA
2201 TGACCATCAA CGGCCCGTGG GCATGGTCCA ACATCGACAC CAGCAAAGTG
2251 AATTATGGTG TAACGGTACT GCCGACCTTC AAGGGTCAAC CATCCAAACC
2301 GTTCGTTGGC GTGCTGAGCG CAGGTATTAA CGCCGCCAGT CCGAACAAAG
2351 AGCTGGCAAA AGAGTTCCTC GAAAACTATC TGCTGACTGA TGAAGGTCTG
2401 GAAGCGGTTA ATAAAGACAA ACCGCTGGGT GCCGTAGCGC TGAAGTCTTA
2451 CGAGGAAGAG TTGGTGAAAG ATCCGCGGAT TGCCGCCACT ATGGAAAACG
2501 CCCAGAAAGG TGAAATCATG CCGAACATCC CGCAGATGTC CGCTTTCTGG
2551 TATGCCGTGC GTACTGCGGT GATCAACGCC GCCAGCGGTC GTCAGACTGT
2601 CGATGAAGCC CTGAAAGACG CGCAGACTAA TTCGAGCTCG AACAACAACA
2651 ACAATAACAA TAACAACAAC CTCGGGCCGG GTGCGGCACA CTACGTAGAA
2701 TTCGGATCCT CTAGAGTCGA CCTGCAGGCA AGCTTGGCAC TGGCCGTCGT
2751 TTTACAACGT CGTGACTGGG AAAACCCTGG CGTTACCCAA CTTAATCGCC
2801 TTGCAGCACA TCCCCCTTTC GCCAGCTGGC GTAATAGCGA AGAGGCCCGC
2851 ACCGATCGCC CTTCCCAACA GTTGCGCAGC CTGAATGGCG AATGGCAGCT
2901 TGGCTGTTTT GGCGGATGAG ATAAGATTTT CAGCCTGATA CAGATTAAAT
2951 CAGAACGCAG AAGCGGTCTG ATAAAACAGA ATTTGCCTGG CGGCAGTAGC
3001 GCGGTGGTCC CACCTGACCC CATGCCGAAC TCAGAAGTGA AACGCCGTAG
3051 CGCCGATGGT AGTGTGGGGT CTCCCCATGC GAGAGTAGGG AACTGCCAGG
3101 CATCAAATAA AACGAAAGGC TCAGTCGAAA GACTGGGCCT TTCGTTTTAT
3151 CTGTTGTTTG TCGGTGAACG CTCTCCTGAG TAGGACAAAT CCGCCGGGAG
3201 CGGATTTGAA CGTTGCGAAG CAACGGCCCG GAGGGTGGCG GGCAGGACGC
3251 CCGCCATAAA CTGCCAGGCA TCAAATTAAG CAGAAGGCCA TCCTGACGGA
3301 TGGCCTTTTT GCGTTTCTAC AAACTCTTTT GTTTATTTTT CTAAATACAT
3351 TCAAATATGT ATCCGCTCAT GAGACAATAA CCCTGATAAA TGCTTCAATA
3401 ATATTGAAAA AGGAAGAGTA TGAGTATTCA ACATTTCCGT GTCGCCCTTA
3451 TTCCCTTTTT TGCGGCATTT TGCCTTCCTG TTTTTGCTCA CCCAGAAACG
3501 CTGGTGAAAG TAAAAGATGC TGAAGATCAG TTGGGTGCAC GAGTGGGTTA
3551 CATCGAACTG GATCTCAACA GCGGTAAGAT CCTTGAGAGT TTTCGCCCCG
3601 AAGAACGTTT CCCAATGATG AGCACTTTTA AAGTTCTGCT ATGTGGCGCG
3651 GTATTATCCC GTGTTGACGC CGGGCAAGAG CAACTCGGTC GCCGCATACA
3701 CTATTCTCAG AATGACTTGG TTGAGTACTC ACCAGTCACA GAAAAGCATC
3751 TTACGGATGG CATGACAGTA AGAGAATTAT GCAGTGCTGC CATAACCATG
3801 AGTGATAACA CTGCGGCCAA CTTACTTCTG ACAACGATCG GAGGACCGAA
3851 GGAGCTAACC GCTTTTTTGC ACAACATGGG GGATCATGTA ACTCGCCTTG
3901 ATCGTTGGGA ACCGGAGCTG AATGAAGCCA TACCAAACGA CGAGCGTGAC
3951 ACCACGATGC CTGTAGCAAT GGCAACAACG TTGCGCAAAC TATTAACTGG
4001 CGAACTACTT ACTCTAGCTT CCCGGCAACA ATTAATAGAC TGGATGGAGG
4051 CGGATAAAGT TGCAGGACCA CTTCTGCGCT CGGCCCTTCC GGCTGGCTGG
4101 TTTATTGCTG ATAAATCTGG AGCCGGTGAG CGTGGGTCTC GCGGTATCAT
4151 TGCAGCACTG GGGCCAGATG GTAAGCCCTC CCGTATCGTA GTTATCTACA
4201 CGACGGGGAG TCAGGCAACT ATGGATGAAC GAAATAGACA GATCGCTGAG
4251 ATAGGTGCCT CACTGATTAA GCATTGGTAA CTGTCAGACC AAGTTTACTC
4301 ATATATACTT TAGATTGATT TACCCCGGTT GATAATCAGA AAAGCCCCAA
4351 AAACAGGAAG ATTGTATAAG CAAATATTTA AATTGTAAAC GTTAATATTT
4401 TGTTAAAATT CGCGTTAAAT TTTTGTTAAA TCAGCTCATT TTTTAACCAA
4451 TAGGCCGAAA TCGGCAAAAT CCCTTATAAA TCAAAAGAAT AGACCGAGAT
4501 AGGGTTGAGT GTTGTTCCAG TTTGGAACAA GAGTCCACTA TTAAAGAACG
4551 TGGACTCCAA CGTCAAAGGG CGAAAAACCG TCTATCAGGG CGATGGCCCA
4601 CTACGTGAAC CATCACCCAA ATCAAGTTTT TTGGGGTCGA GGTGCCGTAA
4651 AGCACTAAAT CGGAACCCTA AAGGGAGCCC CCGATTTAGA GCTTGACGGG
4701 GAAAGCCGGC GAACGTGGCG AGAAAGGAAG GGAAGAAAGC GAAAGGAGCG
4751 GGCGCTAGGG CGCTGGCAAG TGTAGCGGTC ACGCTGCGCG TAACCACCAC
4801 ACCCGCCGCG CTTAATGCGC CGCTACAGGG CGCGTAAAAG GATCTAGGTG
4851 AAGATCCTTT TTGATAATCT CATGACCAAA ATCCCTTAAC GTGAGTTTTC
4901 GTTCCACTGA GCGTCAGACC CCGTAGAAAA GATCAAAGGA TCTTCTTGAG
4951 ATCCTTTTTT TCTGCGCGTA ATCTGCTGCT TGCAAACAAA AAAACCACCG
5001 CTACCAGCGG TGGTTTGTTT GCCGGATCAA GAGCTACCAA CTCTTTTTCC
5051 GAAGGTAACT GGCTTCAGCA GAGCGCAGAT ACCAAATACT GTCCTTCTAG
5101 TGTAGCCGTA GTTAGGCCAC CACTTCAAGA ACTCTGTAGC ACCGCCTACA
5151 TACCTCGCTC TGCTAATCCT GTTACCAGTG GCTGCTGCCA GTGGCGATAA
5201 GTCGTGTCTT ACCGGGTTGG ACTCAAGACG ATAGTTACCG GATAAGGCGC
5251 AGCGGTCGGG CTGAACGGGG GGTTCGTGCA CACAGCCCAG CTTGGAGCGA
5301 ACGACCTACA CCGAACTGAG ATACCTACAG CGTGAGCTAT GAGAAAGCGC
5351 CACGCTTCCC GAAGGGAGAA AGGCGGACAG GTATCCGGTA AGCGGCAGGG
5401 TCGGAACAGG AGAGCGCACG AGGGAGCTTC CAGGGGGAAA CGCCTGGTAT
5451 CTTTATAGTC CTGTCGGGTT TCGCCACCTC TGACTTGAGC GTCGATTTTT
5501 GTGATGCTCG TCAGGGGGGC GGAGCCTATG GAAAAACGCC AGCAACGCGG
5551 CCTTTTTACG GTTCCTGGCC TTTTGCTGGC CTTTTGCTCA CATGTTCTTT
5601 CCTGCGTTAT CCCCTGATTC TGTGGATAAC CGTATTACCG CCTTTGAGTG
5651 AGCTGATACC GCTCGCCGCA GCCGAACGAC CGAGCGCAGC GAGTCAGTGA
5701 GCGAGGAAGC GGAAGAGCGC CTGATGCGGT ATTTTCTCCT TACGCATCTG
5751 TGCGGTATTT CACACCGCAT ATATGGTGCA CTCTCAGTAC AATCTGCTCT
5801 GATGCCGCAT AGTTAAGCCA GTATACACTC CGCTATCGCT ACGTGACTGG
5851 GTCATGGCTG CGCCCCGACA CCCGCCAACA CCCGCTGACG CGCCCTGACG
5901 GGCTTGTCTG CTCCCGGCAT CCGCTTACAG ACAAGCTGTG ACCGTCTCCG
5951 GGAGCTGCAT GTGTCAGAGG TTTTCACCGT CATCACCGAA ACGCGCGAGG
6001 CAGCTGCGGT AAAGCTCATC AGCGTGGTCG TGCAGCGATT CACAGATGTC
6051 TGCCTGTTCA TCCGCGTCCA GCTCGTTGAG TTTCTCCAGA AGCGTTAATG
6101 TCTGGCTTCT GATAAAGCGG GCCATGTTAA GGGCGGTTTT TTCCTGTTTG
6151 GTCACTGATG CCTCCGTGTA AGGGGGATTT CTGTTCATGG GGGTAATGAT
6201 ACCGATGAAA CGAGAGAGGA TGCTCACGAT ACGGGTTACT GATGATGAAC
6251 ATGCCCGGTT ACTGGAACGT TGTGAGGGTA AACAACTGGC GGTATGGATG
6301 CGGCGGGACC AGAGAAAAAT CACTCAGGGT CAATGCCAGC GCTTCGTTAA
6351 TACAGATGTA GGTGTTCCAC AGGGTAGCCA GCAGCATCCT GCGATGCAGA
6401 TCCGGAACAT AATGGTGCAG GGCGCTGACT TCCGCGTTTC CAGACTTTAC
6451 GAAACACGGA AACCGAAGAC CATTCATGTT GTTGCTCAGG TCGCAGACGT
6501 TTTGCAGCAG CAGTCGCTTC ACGTTCGCTC GCGTATCGGT GATTCATTCT
6551 GCTAACCAGT AAGGCAACCC CGCCAGCCTA GCCGGGTCCT CAACGACAGG
6601 AGCACGATCA TGCGCACCCG TGGCCAGGAC CCAACGCTGC CCGAAATT

__NOTOC__

Template:Plasmid

2007-09-05T19:19:09Z

NoPower:

==At a Glance {{HelpIcon|Help:Plasmid}}==
<newTableEdit>PlasmidTable</newTableEdit>
 
 
==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources {{HelpIcon|Help:Plasmid}}==
{{PlasmidSources}}

==References==
{{RefHelp}}
<references/>

==Sequence {{HelpIcon|Help:Plasmid}}==
{{PlasmidSeq}}

<includeonly>[[Category:Plasmids]]</includeonly>
__NOTOC__

cynR:Gene

2007-09-05T19:18:28Z

NoPower: edited by NoPower via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cynR}}{{Tab On|Gene|cynR}}{{Tab|Gene Product(s)|cynR}}{{Tab|Expression|cynR}}{{Tab|Evolution|cynR}}{{Tab|On One Page|cynR}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}


{|{{Prettytable}}
|-
!{{table_heading_style}} |Standard name
|
''cynR''
|-
!{{table_heading_style}} |Mnemonic
|

|-
!{{table_heading_style}} |Synonyms
|
''ECK0335, b0338, JW5894''<ref name='LIB:Riley_2006'/>
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.M46a9ada153bae&page=11247&pagename={{FULLPAGENAMEE}} edit table]
|}

{{Gene_nomenclature_help}}
</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>


{|class = 'sortable' {{Prettytable}} id='126939'
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
7.69 minutes 
|
MG1655: 357914..357015 {{GBrowseFigureByCoord|356015|358914|ecoli|MG1655}}
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11421 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:356015..358914 GBrowse(MG1655)]

|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:357015..357914&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG11421 EcoCyc Sequence Dump]
|-
|
W3110
|
 
|
W3110: 357914..357015 {{GBrowseFigureByCoord|356015|358914|ecoli_W3110|W3110}}
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:356015..358914 GBrowse(W3110)]
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:357015..357914&plugin_action=Go FASTA Dump]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.D46a9ada1ccace&page=11247&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Gene_location_help}}
</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126940'
|- {{table_heading_style}}
!Feature type!!Location!!Description
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.S46a9ada27785b&page=11247&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Gene_sequence_features_help}}
<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126941'
|- {{table_heading_style}}
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔcynR (Keio:JW5894)
|
deletion
|
deletion
|

|

|
[[PMID:16738554]]<ref name=PMID:16738554/>
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.F46a9ada2b8e3a&page=11247&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|}

{{Gene_alleles_help}}
<protect></protect>
===Notes===

==Genetic Resources==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126942'
|- {{table_heading_style}}
!Resource!!Resource Type!!Source!!Notes/Reference
|-
|

|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
[[PMID:16769691]]<ref name=PMID:16769691/>

Status:

Primer 1:

Primer 2:
|-
|
[[proA:Gene|proA81::Tn10]]
|
Linked marker
|
CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[lacI:Gene|lacI3042::Tn10]]
|
Linked marker
|
CAG18439 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39002 CGSC7334]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 72% <ref name='LIB:Nichols_linked_Tn'/>

Synonyms:lacI42::Tn10

CAG18439 also carries lacZ118(0c) (CGSC).
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.M46a9ada3703d5&page=11247&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Gene_resources_help}}
<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126943'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11421 EcoCyc:EG11421]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1391 EchoBASE:EB1391]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0338 EcoliGenExpDB:b0338]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11421 EcoGene:EG11421]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=CYNR ECOO157CYC:CYNR]
|

|-
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/31255 CGSC:31255]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.M46a9ada406d0f&page=11247&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Gene_accessions_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='96460'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.A46a67ace0424b&page=11247&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}

<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</protect></noinclude>
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

Sandbox

2007-09-05T17:30:54Z

NoPower:

'''bold'''

''Ecoliwiki'' is '''good.'''
[[cynR]]

I am trying to see how your ref system works... <ref name=PMID:8529872/>, no really! <ref name=PMID:11791232/>. Here is another sentence <ref name=PMID:2614845/>.

----

<references/>

<protect>

{|class = 'sortable' {{Prettytable}} id='220559'
|-
!Here is a heading!!And another!!and another
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.X46d4749030581&page=2&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
</protect>

<protect>

{|class = 'sortable' {{Prettytable}} id='220574'
|-
!Feature!!Coordinates!!Source
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.R46d8443aef9da&page=2&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
</protect>

JH787

2007-09-05T17:28:06Z

NoPower: New page: ==Alternate Names {{HelpIcon|Help:Strains}}== ==Chromosomal Genotype {{HelpIcon|Help:Strains}}== ==Plasmids {{HelpIcon|Help:Strains}}== ==Phage {{HelpIcon|Help:Strains}}== ==Phenotypes...

==Alternate Names {{HelpIcon|Help:Strains}}==

==Chromosomal Genotype {{HelpIcon|Help:Strains}}==

==Plasmids {{HelpIcon|Help:Strains}}==

==Phage {{HelpIcon|Help:Strains}}==

==Phenotypes {{HelpIcon|Help:Strains}}==

==Construction {{HelpIcon|Help:Strains}}==

==Notes==

==References==
{{RefHelp}}
<references/>

__NOTOC__
[[Category:Strains]]

cynR:Gene

2007-09-05T17:19:26Z

NoPower: edited by NoPower via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cynR}}{{Tab On|Gene|cynR}}{{Tab|Gene Product(s)|cynR}}{{Tab|Expression|cynR}}{{Tab|Evolution|cynR}}{{Tab|On One Page|cynR}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}


{|{{Prettytable}}
|-
!{{table_heading_style}} |Standard name
|
''cynR''
|-
!{{table_heading_style}} |Mnemonic
|

|-
!{{table_heading_style}} |Synonyms
|
''ECK0335, b0338, JW5894''<ref name='LIB:Riley_2006'/>
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.M46a9ada153bae&page=11247&pagename={{FULLPAGENAMEE}} edit table]
|}

{{Gene_nomenclature_help}}
</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>


{|class = 'sortable' {{Prettytable}} id='126939'
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
7.69 minutes 
|
MG1655: 357914..357015 {{GBrowseFigureByCoord|356015|358914|ecoli|MG1655}}
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11421 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:356015..358914 GBrowse(MG1655)]

|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:357015..357914&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG11421 EcoCyc Sequence Dump]
|-
|
W3110
|
 
|
W3110: 357914..357015 {{GBrowseFigureByCoord|356015|358914|ecoli_W3110|W3110}}
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:356015..358914 GBrowse(W3110)]
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:357015..357914&plugin_action=Go FASTA Dump]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.D46a9ada1ccace&page=11247&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Gene_location_help}}
</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126940'
|- {{table_heading_style}}
!Feature type!!Location!!Description
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.S46a9ada27785b&page=11247&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Gene_sequence_features_help}}
<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126941'
|- {{table_heading_style}}
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔcynR (Keio:JW5894)
|
deletion
|
deletion
|

|

|
[[PMID:16738554]]<ref name=PMID:16738554/>
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|

|-
|
cynR::miniTn10 kan
|

|

|
Growth Phenotype
|
sensitive to KCON
|

|

|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.F46a9ada2b8e3a&page=11247&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|}

{{Gene_alleles_help}}
<protect></protect>
===Notes===

==Genetic Resources==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126942'
|- {{table_heading_style}}
!Resource!!Resource Type!!Source!!Notes/Reference
|-
|

|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
[[PMID:16769691]]<ref name=PMID:16769691/>

Status:

Primer 1:

Primer 2:
|-
|
[[proA:Gene|proA81::Tn10]]
|
Linked marker
|
CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[lacI:Gene|lacI3042::Tn10]]
|
Linked marker
|
CAG18439 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39002 CGSC7334]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 72% <ref name='LIB:Nichols_linked_Tn'/>

Synonyms:lacI42::Tn10

CAG18439 also carries lacZ118(0c) (CGSC).
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.M46a9ada3703d5&page=11247&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Gene_resources_help}}
<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='126943'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11421 EcoCyc:EG11421]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1391 EchoBASE:EB1391]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0338 EcoliGenExpDB:b0338]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11421 EcoGene:EG11421]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=CYNR ECOO157CYC:CYNR]
|

|-
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/31255 CGSC:31255]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.M46a9ada406d0f&page=11247&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Gene_accessions_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='96460'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11247.A46a67ace0424b&page=11247&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}

<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</protect></noinclude>
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

pACYC177

2007-08-09T19:27:54Z

NoPower: /* Images {{HelpIcon|Help:Plasmid}} */

==At a Glance {{HelpIcon|Help:Plasmid}}==
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|-
!{{table heading style}} |Copy #
|-
!{{table heading style}} |Markers
|-
!{{table heading style}} |Comments
|-
!{{table heading style}} |References
|-
|colspan='1'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46bb68cf4947e&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources {{HelpIcon|Help:Plasmid}}==
{{PlasmidSources}}

==Sequence {{HelpIcon|Help:Plasmid}}==
{{PlasmidSeq}}

[http://www.google.com This should be to NCBI]

==Images {{HelpIcon|Help:Plasmid}}==
{{PlasmidImage}}

[[Image:PACYC177.jpg|thumb|400px]]
 

==References==
{{RefHelp}}
<references/>

__NOTOC__

[[Category:Plasmids]]

pACYC177

2007-08-09T19:27:03Z

NoPower: /* Sequence {{HelpIcon|Help:Plasmid}} */

==At a Glance {{HelpIcon|Help:Plasmid}}==
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|-
!{{table heading style}} |Copy #
|-
!{{table heading style}} |Markers
|-
!{{table heading style}} |Comments
|-
!{{table heading style}} |References
|-
|colspan='1'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46bb68cf4947e&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources {{HelpIcon|Help:Plasmid}}==
{{PlasmidSources}}

==Sequence {{HelpIcon|Help:Plasmid}}==
{{PlasmidSeq}}

[http://www.google.com This should be to NCBI]

==Images {{HelpIcon|Help:Plasmid}}==
{{PlasmidImage}}

[[Image:PACYC177.jpg|thumb|400px]]

==References==
{{RefHelp}}
<references/>

__NOTOC__

[[Category:Plasmids]]

pACYC177

2007-08-09T19:26:41Z

NoPower: /* Sequence {{HelpIcon|Help:Plasmid}} */

==At a Glance {{HelpIcon|Help:Plasmid}}==
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|-
!{{table heading style}} |Copy #
|-
!{{table heading style}} |Markers
|-
!{{table heading style}} |Comments
|-
!{{table heading style}} |References
|-
|colspan='1'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46bb68cf4947e&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources {{HelpIcon|Help:Plasmid}}==
{{PlasmidSources}}

==Sequence {{HelpIcon|Help:Plasmid}}==
{{PlasmidSeq}}

[htp://www.google.com This should be to NCBI]

==Images {{HelpIcon|Help:Plasmid}}==
{{PlasmidImage}}

[[Image:PACYC177.jpg|thumb|400px]]

==References==
{{RefHelp}}
<references/>

__NOTOC__

[[Category:Plasmids]]

pACYC177

2007-08-09T19:25:06Z

NoPower: /* Images {{HelpIcon|Help:Plasmid}} */

==At a Glance {{HelpIcon|Help:Plasmid}}==
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|-
!{{table heading style}} |Copy #
|-
!{{table heading style}} |Markers
|-
!{{table heading style}} |Comments
|-
!{{table heading style}} |References
|-
|colspan='1'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46bb68cf4947e&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources {{HelpIcon|Help:Plasmid}}==
{{PlasmidSources}}

==Sequence {{HelpIcon|Help:Plasmid}}==
{{PlasmidSeq}}

==Images {{HelpIcon|Help:Plasmid}}==
{{PlasmidImage}}

[[Image:PACYC177.jpg|thumb|400px]]

==References==
{{RefHelp}}
<references/>

__NOTOC__

[[Category:Plasmids]]

pACYC177

2007-08-09T19:22:28Z

NoPower: /* Images {{HelpIcon|Help:Plasmid}} */

==At a Glance {{HelpIcon|Help:Plasmid}}==
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|-
!{{table heading style}} |Copy #
|-
!{{table heading style}} |Markers
|-
!{{table heading style}} |Comments
|-
!{{table heading style}} |References
|-
|colspan='1'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46bb68cf4947e&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources {{HelpIcon|Help:Plasmid}}==
{{PlasmidSources}}

==Sequence {{HelpIcon|Help:Plasmid}}==
{{PlasmidSeq}}

==Images {{HelpIcon|Help:Plasmid}}==
{{PlasmidImage}}

[[Image:PACYC177.jpg]]

==References==
{{RefHelp}}
<references/>

__NOTOC__

[[Category:Plasmids]]

pACYC177

2007-08-09T19:19:43Z

NoPower: New page: ==At a Glance {{HelpIcon|Help:Plasmid}}== <protect> <!-- *******************************************************************...

==At a Glance {{HelpIcon|Help:Plasmid}}==
<protect>

{|{{Prettytable}}
|-
!{{table heading style}} |Type
|-
!{{table heading style}} |Copy #
|-
!{{table heading style}} |Markers
|-
!{{table heading style}} |Comments
|-
!{{table heading style}} |References
|-
|colspan='1'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.W46bb68cf4947e&page=0&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>

==History {{HelpIcon|Help:Plasmid}}==
{{PlasmidHistory}}

==Sources {{HelpIcon|Help:Plasmid}}==
{{PlasmidSources}}

==Sequence {{HelpIcon|Help:Plasmid}}==
{{PlasmidSeq}}

==Images {{HelpIcon|Help:Plasmid}}==
{{PlasmidImage}}

==References==
{{RefHelp}}
<references/>

__NOTOC__

[[Category:Plasmids]]

ssrS:Gene Product(s)

2007-08-09T19:15:08Z

NoPower: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ssrS}}{{Tab|Gene|ssrS}}{{Tab On|Gene Product(s)|ssrS}}{{Tab|Expression|ssrS}}{{Tab|Evolution|ssrS}}{{Tab|On One Page|ssrS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==


{|{{Prettytable}}
|-
!{{table heading style}} |Standard name
|
SsrS RNA
|-
!{{table heading style}} |Synonyms
|
6S regulatory RNA product<ref name='LIB:Riley_2006'/>, SsrS product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2911 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssr product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!{{table heading style}} |Product description
|
6S RNA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!{{table heading style}} |EC number (for enzymes)
|
*
|-
|colspan='3'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.U46aac63c15982&page=26193&pagename={{FULLPAGENAMEE}} edit table]
|}

{{Product_nomenclature_help}}
<protect></protect>
===Notes===
6S RNA was first identified by Hindley in 1967 <ref name=PMID:4865141/> who did fingerprint analysis of 32P-labelled ''E. coli'' RNAs.

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big>


{|class = 'sortable' {{Prettytable}} id='172785'
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0016072
|
rRNA metabolic process
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.O46aac63d274cd&page=26193&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|}

{{Product_GO_help}}

<big>'''Interactions'''</big>


{|class = 'sortable' {{Prettytable}} id='172786'
|- {{table heading style}}
!Partner Type!!Partner!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.Z46aac644bd1fa&page=26193&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Product_interactions_help}}
</protect>
===Notes===

==Localization==


{|class = 'sortable' {{Prettytable}} id='117151'
|- {{table heading style}}
!Compartment!!Description!!Evidence!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.T46a85bde91586&page=26193&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Product_localization_help}}
<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>


{|{{Prettytable}}
|-
!{{table heading style}} |Sequence
|

|-
!{{table heading style}} |Mol. Wt
|

|-
!{{table heading style}} |pI
|

|-
!{{table heading style}} |Extinction coefficient
|

|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.F46aac646a81cd&page=26193&pagename={{FULLPAGENAMEE}} edit table]
|}

{{Product_physical_properties_help}}

<big>'''Domains/Motifs/Modification Sites'''</big>


{|class = 'sortable' {{Prettytable}} id='172788'
|- {{table heading style}}
!Type!!Residues!!Description!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.W46aac6472429d&page=26193&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Product_domains_motifs_help}}

<big>'''Structure'''</big>


{|class = 'sortable' {{Prettytable}} id='117152'
|- {{table heading style}}
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.Z46a85be030df7&page=26193&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Product_structure_help}}
</protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='172789'
|- {{table_heading_style}}
!Resource type!!Source!!Notes/Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.H46aac647e32d8&page=26193&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Product_resources_help}}
<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='172790'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=6S-RNA EcoCyc:6S-RNA]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.A46aac6484e483&page=26193&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Product_accessions_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='117153'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26193.G46a85be14b9c1&page=26193&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}

<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:GO:0016072_!_rRNA metabolic process]][[Category:GO:0006355_!_regulation of transcription, DNA-dependent]]

ssrS:Expression

2007-08-09T19:13:34Z

NoPower: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ssrS}}{{Tab|Gene|ssrS}}{{Tab|Gene Product(s)|ssrS}}{{Tab On|Expression|ssrS}}{{Tab|Evolution|ssrS}}{{Tab|On One Page|ssrS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Overview==
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|

{|class = 'sortable' {{Prettytable}} id='199444'
|- {{table heading style}}
!Transcription unit(s)
|-
|
[[:Category:Txn_unit:ssrS|ssrS]]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.40076.X46ab706e71f07&page=40076&pagename={{FULLPAGENAMEE}} edit table]
|}
||{{RegulonDBfig|ECK120002541.jpg|SSRS}}
|}
{{expression_transcription_help}}
</protect>
===Notes===
{{Expression_transcription_placeholder}}

The transcription unit shown is not accurate. <ref name='PMID:'/>

==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|3053985|3054025|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled|400|{{Nterm_closeup}} }}
</protect>
===Notes===
{{Expression_translation_placeholder}}

==Turnover and Regulation of Turnover==
</protect>

===Notes===
{{Expression_turnover_placeholder}}

==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>


{|class = 'sortable' {{Prettytable}} id='199445'
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.40076.L46ab706f40511&page=40076&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Expression_allele_table_help}}

<big>'''Expression Studies'''</big>


{|class = 'sortable' {{Prettytable}} id='199446'
|- {{table heading style}}
!Type!!Reference!!Notes
|-
|
microarray
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2911 EcoliGenExpDB:b2911] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for ssrS from multiple microarray studies
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.40076.Q46ab706fb3a17&page=40076&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_studies_table_help}}

<big>'''Expression Resources'''</big>


{|class = 'sortable' {{Prettytable}} id='199447'
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.40076.I46ab7070314c8&page=40076&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Expression_resource_table_help}}
<protect></protect>
===Notes===

==Accessions Related to ''ssrS'' Expression==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='199448'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG30099 EcoCyc:EG30099]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4262 EchoBASE:EB4262]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2911 EcoliGenExpDB:b2911]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG30099 EcoGene:EG30099]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.40076.N46ab7070aa112&page=40076&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_accessions_table_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='105177'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.40076.G46a7cdb5f355e&page=40076&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:ssrS]]

parC:Quickview

2007-08-09T19:03:44Z

NoPower: /* Notes */

parC:Gene

2007-08-09T18:54:31Z

NoPower: edited by NoPower via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|parC}}{{Tab On|Gene|parC}}{{Tab|Gene Product(s)|parC}}{{Tab|Expression|parC}}{{Tab|Evolution|parC}}{{Tab|On One Page|parC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}


{|{{Prettytable}}
|-
!{{table_heading_style}} |Standard name
|
''parC''
|-
!{{table_heading_style}} |Mnemonic
|

|-
!{{table_heading_style}} |Synonyms
|
''ECK3010, b3019, JW2987''<ref name='LIB:Riley_2006'/>
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.C46a9eba98290f&page=16595&pagename={{FULLPAGENAMEE}} edit table]
|}

{{Gene_nomenclature_help}}
</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>


{|class = 'sortable' {{Prettytable}} id='142982'
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
68.15 minutes 
|
MG1655: 3163995..3161737 {{GBrowseFigureByCoord|3160737|3164995|ecoli|MG1655}}
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10686 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:3160737..3164995 GBrowse(MG1655)]

|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:3161737..3163995&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG10686 EcoCyc Sequence Dump]
|-
|
W3110
|
 
|
W3110: 3164629..3162371 {{GBrowseFigureByCoord|3161371|3165629|ecoli_W3110|W3110}}
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:3161371..3165629 GBrowse(W3110)]
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:3162371..3164629&plugin_action=Go FASTA Dump]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.T46a9ebaa0dd6c&page=16595&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Gene_location_help}}
</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='142983'
|- {{table_heading_style}}
!Feature type!!Location!!Description
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.L46a9ebaabfe85&page=16595&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Gene_sequence_features_help}}
<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='142984'
|- {{table_heading_style}}
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔparC (Keio:JW2987)
|
deletion
|
deletion
|

|

|
[[PMID:16738554]]<ref name=PMID:16738554/>
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|

|-
|
parC1215
|

|

|
Growth Phenotype
|
ts @ 42
|
[[PMID:2842295]]<ref name=PMID:2842295/>
|
AZ[[User:NoPower|NoPower]] 13:54, 9 August 2007 (CDT)
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.K46a9ebab13e41&page=16595&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|}

{{Gene_alleles_help}}
<protect></protect>
===Notes===

==Genetic Resources==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='142985'
|- {{table_heading_style}}
!Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2987
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
[[PMID:16769691]]<ref name=PMID:16769691/>

Status:Clone OK

Primer 1:GCCAGCGATATGGCAGAGCGCCT

Primer 2:CCtTCTTCGCTATCACCGCTGCT
|-
|
[[metC:Gene|metC162::Tn10]]
|
Linked marker
|
CAG18475 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38931 CGSC7435]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 67% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[tolC:Gene|tolC210::Tn10]]
|
Linked marker
|
CAG12184 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38758 CGSC7437]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 56% <ref name='LIB:Nichols_linked_Tn'/>
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.T46a9ebabc5e3a&page=16595&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Gene_resources_help}}
<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='142986'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10686 EcoCyc:EG10686]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0680 EchoBASE:EB0680]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3019 EcoliGenExpDB:b3019]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3760 ECOL199310CYC:C3760]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10686 EcoGene:EG10686]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=PARC ECOO157CYC:PARC]
|

|-
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/33440 CGSC:33440]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.P46a9ebac6bc4d&page=16595&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Gene_accessions_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='142987'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16595.M46a9ebb003b46&page=16595&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}

<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</protect></noinclude>
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

Popular Categories

2007-08-09T17:09:17Z

NoPower: /* Homologs */

==Genomes==
* [[:Category:Gene_List:MG1655|Genes in ''E. coli'' MG1655]]
* [[:Category:Gene List:W3110|Genes in ''E. coli'' W3110]]
* [[:Category:Gene_List:Phage_lambda|Genes in Bacteriophage lambda]]
* [[:Category:Gene_List:Plasmid_F|Genes in F]]

==Complexes==
*[[:Category:Complexes| Complexes]]

==Homologs==
*[[:Category:Genes with homologs in Saccharomyces cerevisiae|''E. coli'' genes with orthologs in ''Saccharomyces cerevisiae'' ]]
*[[:Category:Genes_with_homologs_in_Arabidopsis_thaliana|''E. coli'' genes with orthologs in ''Arabidopsis thaliana'']]
*[[:Category:Genes with homologs in Homo sapiens|''E. coli'' genes with human orthologs]]

==Databases==
* [[:Category:Databases|'''Databases''']]: Information about other online resources that may or may not be targeted for interoperation or warehousing with EcoliHub
*[[:Category:E. coli Databases|''E. coli'' databases]]
*[[:Category:Databases|Other databases]]

Popular Categories

2007-08-09T17:07:40Z

NoPower:

==Genomes==
* [[:Category:Gene_List:MG1655|Genes in ''E. coli'' MG1655]]
* [[:Category:Gene List:W3110|Genes in ''E. coli'' W3110]]
* [[:Category:Gene_List:Phage_lambda|Genes in Bacteriophage lambda]]
* [[:Category:Gene_List:Plasmid_F|Genes in F]]

==Complexes==
*[[:Category:Complexes| Complexes]]

==Homologs==
*[[:Category:Genes with homologs in Saccharomyces cerevisiae|''E. coli'' genes with orthologs in ''Saccharomyces cerevisiae'' ]]
*[[:Category:Genes with homologs in Homo sapiens|''E. coli'' genes with human orthologs]]

==Databases==
* [[:Category:Databases|'''Databases''']]: Information about other online resources that may or may not be targeted for interoperation or warehousing with EcoliHub
*[[:Category:E. coli Databases|''E. coli'' databases]]
*[[:Category:Databases|Other databases]]

Are these really transcription factors?

2007-08-07T21:31:44Z

NoPower:

In the spirit of community annotation, we welcome your opinion for any of the putative factors listed in the table below.
The first column is the Gene Name. In the second column, add '''''yes''''' or '''''no''''' to the existing votes. LIkewise, use the next two columns to vote on whether or not the gene is a positive or negative regulator. Please feel free to add any comments. Finally, if you have any evidence (literature, personal communications, ''etc'') please add them in that column.

<protect>

{|class = 'sortable' {{Prettytable}} id='220151'
|-
!Gene Name!!Is this a Regulator?!!Positive Regulator?!!Negative Regulator?!!Comments!!Evidence
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.111885.E46b8e442a92e9&page=111885&pagename={{FULLPAGENAMEE}} edit table] || || || || ||
|}
</protect>

Are these really transcription factors?

2007-08-07T21:29:39Z

NoPower:

In the spirit of community annotation, we welcome your opinion for any of the putative factors listed in the table below.
The first column is the Gene Name. In the second column, add yes or no to the existing votes. LIkewise, use the next two columns to vote on whether or not the gene is a positive or negative regulator. Please feel free to add any comments. Finally, if you have any evidence (literature, personal communications, ''etc'') please add them in that column.

<protect>

{|class = 'sortable' {{Prettytable}} id='220151'
|-
!Gene Name!!Is this a Regulator?!!Positive Regulator?!!Negative Regulator?!!Comments!!Evidence
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.111885.E46b8e442a92e9&page=111885&pagename={{FULLPAGENAMEE}} edit table] || || || || ||
|}
</protect>

Are these really transcription factors?

2007-08-07T21:28:36Z

NoPower: New page: In the spirit of community annotation, we welcome your opinion for any of the putative factors listed in the table below. The first column is the Gene Name. In the second column, add ye...

Phage lambda N:Gene

2007-07-27T05:16:29Z

NoPower: edited by NoPower via TableEdit

Template:Database

2007-07-20T20:15:37Z

NoPower: /* References */

{{Pagetop}}
[[Category:Databases]]
{|{{Prettytable}} width='30%' align = 'right'
|- align='center' bgcolor = '#ddddff'
| colspan = '2' | '''{{PAGENAME}}'''
|-
| width='30%' | Who:
| ''proprietor''
|-
| width='30%' | What:
| ''short description''
|-
| Where:
| [{{{1|link}}} {{PAGENAME}}]
|-
| Updates
|
|-
| Upcoming events
| ''link to event calendar, if applicable''
|-
| Web Services
|
|}
=About {{PAGENAME}} {{HelpIcon|Help:Databases}}=
''Add general information here''
[{{{1|link}}} {{PAGENAME}}] is...
=Content {{HelpIcon|Help:Databases}}=

=Using {{PAGENAME}} {{HelpIcon|Help:Databases}}=
==Browsing==
==Searching==
==Usage examples==
''Add links to additional pages describing success stories here.''

=Other sites with related content {{HelpIcon|Help:Databases}}=

=Technology {{HelpIcon|Help:Databases}}=
==Web Services/API==

=Discussion {{HelpIcon|Help:Databases}}=

=References {{HelpIcon|Help:Databases}}=
<references />

=External Links=
[{{{1|link}}} {{PAGENAME}}] URL:{{{1|link}}}
==Discussion of {{PAGENAME}} on other websites==

Template:Bioinformatics Tools

2007-07-20T20:00:18Z

NoPower: /* References */

{{Pagetop}}
== Short Description ==
{{UserContentHelp}}
== Links ==
Links to sites that run the software or where it can be obtained
== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<references/>
<includeonly>[[Category:Bioinformatics Tools]]</includeonly>

Template:EXPRESSION ACCESSIONS NOTES

2007-07-18T22:58:13Z

NoPower: New page: This is a placeholder for a summary statement about the accessions of the expression of this gene product. You can help EcoliWiki by becoming a user and writing/editing this stateme...

This is a placeholder for a summary statement about the accessions of the expression of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.