EcoliWiki - User contributions [en]

yfhK:Gene

2013-05-22T22:36:21Z

Nathan: Redirected page to glrK:Gene

#REDIRECT [[glrK:Gene]]

yfhA:Gene

2013-05-22T22:35:38Z

Nathan: Redirected page to glrR:Gene

#REDIRECT [[glrR:Gene]]

yfhA

2013-05-22T22:35:18Z

Nathan: Redirected page to glrR:Quickview

#REDIRECT [[glrR:Quickview]]

yfhA

2013-05-22T22:34:26Z

Nathan: Redirected page to glrR:Gene

#REDIRECT [[glrR:Gene]]

ybaW:Gene

2013-05-22T22:12:22Z

Nathan: Redirected page to fadM:Gene

#REDIRECT [[fadM:Gene]]

imp:Gene

2013-05-22T22:11:41Z

Nathan: Redirected page to lptD:Gene

#REDIRECT [[lptD:Gene]]

Transposon Tn5 neo:Gene

2013-05-22T22:08:50Z

Nathan: Table edited by Nathan via TableEdit

__NOTOC__
{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
{{TabsTop}}
{{Tab|Quickview|Transposon_Tn5_neo}}{{Tab On|Gene|Transposon_Tn5_neo}}{{Tab|Gene Product(s)|Transposon_Tn5_neo}}{{Tab|Expression|Transposon_Tn5_neo}}{{Tab|Evolution|Transposon_Tn5_neo}}{{Tab|On One Page|Transposon_Tn5_neo}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions |Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
<onlyinclude>
==Nomenclature==
{{BacktoTop}}
<protect><protect>
{{Gene_nomenclature_help}}
{| id="Y4e1f33ada857e" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
Transposon_Tn5 neo
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.Y4e1f33ada857e&page=178370&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}
</protect></protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect><protect>
{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="F4e1f33adaa26d" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
[[Transposon Tn5]]
|

|
BM_U00004: 1551..2345
<gbrowseImage>
name=BM_U00004:1551..2345
source=Transposon_Tn5
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|Transposon_Tn5|BM_U00004|1551|2345|GBrowse (Transposon Tn5)}}
|
{{GBrowseFastaLink|Transposon_Tn5|BM_U00004|1551|2345|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.F4e1f33adaa26d&page=178370&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}
</protect></protect>
===Notes===

==Sequence Features==
{{BacktoTop}}
<protect><protect>
{{Gene_sequence_features_help}}
{| id="X4e1f33adabc69" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.X4e1f33adabc69&page=178370&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}
</protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}
<protect><protect>
{{Gene_alleles_help}}
{| id="N4e1f33adadade" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.N4e1f33adadade&page=178370&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_allele_table edit table] || || || || || || ||
|}
</protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect><protect>
{{Genetic_interaction_help}}
{| id="Q4e1f33adaf5d0" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.Q4e1f33adaf5d0&page=178370&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect></protect>
===Notes===

==Genetic Resources==
{{BacktoTop}}
<protect><protect>
{{Gene_resources_help}}
{| id="M4e1f33adb1222" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.M4e1f33adb1222&page=178370&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table] || || ||
|}
</protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}
<protect><protect>
{{Gene_accessions_help}}
{| id="B4e1f33adb2df9" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.B4e1f33adb2df9&page=178370&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
</protect></protect>
===Notes===

==Links==
{{BacktoTop}}
<protect><protect>

{| id="L4e1f33adb49ae" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.178370.L4e1f33adb49ae&page=178370&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
</protect></protect>

</onlyinclude>

==References==
{{BacktoTop}}
{{RefHelp}}
<references/>

===Categories===

[[Category:Gene_List:Transposon_Tn5]]

Plasmid F Fpla111:Gene

2013-05-22T21:34:37Z

Nathan: Table edited by Nathan via TableEdit

Plasmid F Fpla110:Gene

2013-05-22T21:33:14Z

Nathan: Table edited by Nathan via TableEdit

Plasmid F Fpla109:Gene

2013-05-22T21:17:35Z

Nathan: Table edited by Nathan via TableEdit

Welcome to EcoliWiki

2013-05-14T23:29:17Z

Nathan:

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
 

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| style="width:55%; color:#000;" |

{| style="width:280px; border:none; background:none;"
| style="width:280px; text-align:left; white-space:nowrap; color:#000;" |
<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to [[EcoliWiki:About|EcoliWiki]],</div>
<div style="top:+0.2em; font-size:95%;">
[http://porteco.org PortEco's] (formerly EcoliHub) subsystem for community annotation. 
Our goal for EcoliWiki is to generate community-based pages about 
everything related to non-pathogenic ''[[Escherichia_coli|E. coli]]'', its phages, plasmids, and 
mobile genetic elements. Yes, we mean everything...[[EcoliWiki:Wish List|in the long run]].
</div>
|}

| style="width:13%; font-size:95%;" |
* [[:Category:Strains|Strains]]
* [[:Category:Plasmids|Plasmids]]
* [[:Category:Databases|Databases]]
* [http://heptamer.tamu.edu/cgi-bin/gb2/gbrowse/MG1655/ Genome Browser]
| style="width:16%; font-size:95%;" |
* [[:Category:Gene_Lists|Gene Lists]]
* [[:Category:Bioinformatics Tools|Bioinformatics Tools]]
* [[:Category:Methods|Methods]]
* [[Phenotype Tools]]
| style="width:16%; font-size:95%;" |
* [[:Category:Education|Teaching & Education]]
* [[EcoliWiki:Wishlist|Wishlist]]
* [[EcoliWiki:Membership|Membership]]
* [[:Category:Help|Help]]
|}

{| style=" width:100%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===Get Started===
Find information within EcoliWiki by using the ''Search'' box to the left. Just enter your favorite ''E. coli'' gene or gene product. You can also browse our categories if you want to see what's here. Some sample queries are listed below, and you can always read more about searching on our [[Help:Find_Info|Help pages]].
{| style="background:#fcfcfc;"
|-| valign='top'|
| width="40%"|
====Search====
* [[lacZ]]
* [[cynR]]
* [[dnaX]]
* [http://ecoliwiki.net{{SCRIPTPATH}}/index.php/Special:Search?search=RNA+polymerase RNA polymerase]
* [[16S rRNA]]
* [[PMID:17182742]]
* [[DH5_alpha]]
| width="50%"|
====Browse====
* General information about [[Escherichia_coli|''E. coli'']]
* [[:Category:Gene_List:MG1655|Genes in ''E. coli'' MG1655]]
* [[:Category:Gene List:REL606|Genes in ''E. coli'' B strain REL606]]
* [[:Category:Gene_List:Phage_lambda|Genes in Bacteriophage lambda]]
* [[:Category:Gene_List:Phage_M13|Genes in Bacteriophage M13]]
* [[:Category:Gene_List:Phage_T7|Genes in Bacteriophage T7]]
* [[:Category:Genes_with_homologs_in_Homo_sapiens|''E. coli'' genes with human orthologs]]
* [[:Category:Genes_not_mapped_to_a_genome sequence|Genes not mapped to a genome sequence]]
* [[Phantom genes]]
* [http://ecoliwiki.net/tools/chemgen/ Data browser] for Nichols et al. Phenotypic landscape of ''E. coli''
 
|}

===How to Contribute===
EcoliWiki is for [[EcoliWiki:Who is EcoliWiki for?|everyone]]. There are lots of ways you can help us make EcoliWiki better:
* [[:Category:NeedsEditing|Add your knowledge to existing pages]]
* [[Page_Generator|Add new pages about topics you're interested in]]
* [[:Category:Pages with problems or questions|Fix our errors]]
* [[EcoliWiki:Wishlist|Tell us what you want to see on EcoliWiki]]

EcoliWiki participates in [http://www.geneontology.org/GO.refgenome.shtml the RefGenome project]. To see a list of the ''E. coli'' targets [http://ecoliwiki.net/colipedia/index.php/Category:RefGenome_Annotated_Gene click here].

EcoliWiki members can use EcoliWiki in ways that are not available to unregistered users. Read more about user accounts at [[EcoliWiki:Membership|EcoliWiki membership]]. Or just email the EcoliWiki Team at {{Email}} if you have more questions!

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===What's New===
<rss>http://community.porteco.org/wordpress/?feed=rss2&category=ecoliwiki&cat=3|max=3</rss>

|}

__NOTOC__
__NOEDITSECTION__

User:Nathan

2013-01-07T21:55:08Z

Nathan: Table edited by Nathan via TableEdit

Click "edit table" in the last row to add information to the table. Click [[Help:Adding_your_information|here]] to find out how to add more information to your user page.



{| id="D4d7e95babc372" class=" tableEdit User_info_table"

|-
!align=left |Name (Last, First)
||
Liles, Nathan
|-
!align=left |Organization
||
Hu Lab
|-
!align=left |Position
||

|-
!align=left |Address
||

|-
!align=left |Contact Info
||
*email:
|-
!align=left |Website(s)
||

|-
!align=left |Interests
||

|-
!align=left |Genes
||

|-
!align=left |Lab members
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.177268.D4d7e95babc372&page=177268&pagename={{FULLPAGENAMEE}}&type=1&template=User_info_table edit table] ||
|}


==References==
{{RefHelp}}
<references/>

lacZ:Quickview

2012-07-12T18:16:59Z

Nathan: Table edited by Nathan via TableEdit

sroH:Quickview

2012-07-02T21:28:11Z

Nathan: Table edited by Nathan via TableEdit

sroH:Quickview

2012-07-02T21:27:16Z

Nathan: Table edited by Nathan via TableEdit

sroH:Gene

2012-07-02T21:26:58Z

Nathan: Updating Gene_nomenclature_table table.

__NOTOC__
{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
{{TabsTop}}
{{Tab|Quickview|_sroH}}{{Tab On|Gene|_sroH}}{{Tab|Gene Product(s)|_sroH}}{{Tab|Expression|_sroH}}{{Tab|Evolution|_sroH}}{{Tab|On One Page|_sroH}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
<protect>
==Nomenclature==
{{BacktoTop}}
<protect>
{{Gene_nomenclature_help}}
{| id="W4a82e9398f578" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||

|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.W4a82e9398f578&page=165308&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}
</protect>
</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>
<protect>
{{Gene_location_help}}
{| id="Y4a82e93990849" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|

|

|
NC_000913: 4188030..4188830 <gbrowseImage>
name=NC_000913:4188030..4188830
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|MG1655|NC_000913|4188350|4188510|GBrowse (MG1655)}}
|
{{GBrowseFastaLink|MG1655|NC_000913|4188350|4188510|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.Y4a82e93990849&page=165308&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}
</protect>
</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}
<protect>
{{Gene_sequence_features_help}}
{| id="E4a82e93991954" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.E4a82e93991954&page=165308&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}
</protect>
<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}
<protect>
{{Gene_alleles_help}}
{| id="U4a82e93992a47" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.U4a82e93992a47&page=165308&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_allele_table edit table] || || || || || || ||
|}
</protect>
<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="O4e04c4284e775" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.O4e04c4284e775&page=165308&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}
<protect>
{{Gene_resources_help}}
{| id="A4a82e93993bfa" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.A4a82e93993bfa&page=165308&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table] || || ||
|}
</protect>
<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}
<protect>
{{Gene_accessions_help}}
{| id="M4a82e93994d01" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG31182 EcoGene:EG31182]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=7751646 GeneID:7751646]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.M4a82e93994d01&page=165308&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
</protect>
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}
<protect>

{| id="Z4a82e93995e69" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165308.Z4a82e93995e69&page=165308&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
</protect>

==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
===Categories===
[[Category:Gene List:]]
[[Category:sro genes]]

sroH:Gene Product(s)

2012-07-02T21:26:51Z

Nathan: Updating Product_nomenclature_table table.

__NOTOC__
{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
{{TabsTop}}
{{Tab|Quickview|_sroH}}{{Tab|Gene|_sroH}}{{Tab On|Gene Product(s)|_sroH}}{{Tab|Expression|_sroH}}{{Tab|Evolution|_sroH}}{{Tab|On One Page|_sroH}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains|Domains]]
|{{Sub}}[[#Structure and Physical Properties|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
==Nomenclature==
<protect>
{{Product_nomenclature_help}}
{| id="D4a82e942d3681" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||

|-
!align=left {{table heading style}} |Synonyms
||

|-
!align=left {{table heading style}} |Product description
||

|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.D4a82e942d3681&page=165310&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}
</protect>
<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big>
<protect>
{{Product_GO_help}}
{| id="S4a82e942d4a61" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.S4a82e942d4a61&page=165310&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_product edit table] || || || || || || || ||
|}
</protect>

<big>'''Interactions'''</big>
<protect>
{{Product_interactions_help}}
{| id="D4a82e942d5cdd" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.D4a82e942d5cdd&page=165310&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table] || || || ||
|}
</protect>
</protect>
===Notes===

==Localization==
<protect>
{{Product_localization_help}}
{| id="E4a82e942d6dc2" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.E4a82e942d6dc2&page=165310&pagename={{FULLPAGENAMEE}}&type=0&template=Product_localization_table edit table] || || || ||
|}
</protect>
<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>
<table>
<tr align="left" valign="top">
<td>
<protect>

{| id="J4a82eae311942" class=" tableEdit Product_RNA_prop_table"

|-
!align=left {{table heading style}} |Type
|-
!align=left {{table heading style}} |Sequence
|-
!align=left {{table heading style}} |Mol. Wt

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.165310.J4a82eae311942&page=165310&pagename={{FULLPAGENAMEE}}&type=1&template=Product_RNA_prop_table edit table]
|}
</protect>

<big>'''Domains/Motifs/Modification Sites'''</big>
<table>
<tr align="left" valign="top">
<td>
<protect>
{{Product_domains_motifs_help}}
{| id="H4a82e94386ac6" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.H4a82e94386ac6&page=165310&pagename={{FULLPAGENAMEE}}&type=0&template=Product_motif_table edit table] || || || ||
|}
</protect>
</td>
<td>

<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big>
<protect>
{{Product_structure_help}}
{| id="Y4a82e943883b2" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=sroH
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.Y4a82e943883b2&page=165310&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}
</protect>
</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table>
</protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}
<protect>
{{Product_resources_help}}
{| id="L4a82e943895df" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.L4a82e943895df&page=165310&pagename={{FULLPAGENAMEE}}&type=0&template=Product_resource_table edit table] || ||
|}
</protect>
<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}
<protect>
{{Gene_accessions_help}}
{| id="S4a82e9438a595" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.S4a82e9438a595&page=165310&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
</protect>
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}
<protect>

{| id="C4a82e9438b55e" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165310.C4a82e9438b55e&page=165310&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
</protect>

==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
===Categories===
{{BacktoTop}}

[[Category:Proteins]]

sroH:Quickview

2012-07-02T21:26:24Z

Nathan: Table edited by Nathan via TableEdit

ycjU:Quickview

2012-06-29T21:21:50Z

Nathan: Table edited by Nathan via TableEdit

pgmB:Gene

2012-06-29T21:21:46Z

Nathan: Updating Gene_nomenclature_table table.

sroH:Quickview

2012-06-28T22:30:48Z

Nathan: Table edited by Nathan via TableEdit

sroH:Quickview

2012-06-28T22:26:52Z

Nathan: Updating New_Quickview_Table table.

sroH:Quickview

2012-06-28T22:26:50Z

Nathan: Updating New_Quickview_Table table.

ftsK:Gene Product(s)

2012-06-25T21:23:03Z

Nathan: Table edited by Nathan via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ftsK}}{{Tab|Gene|ftsK}}{{Tab On|Gene Product(s)|ftsK}}{{Tab|Expression|ftsK}}{{Tab|Evolution|ftsK}}{{Tab|On One Page|ftsK}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="R46aa4982a88b9" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
FtsK
|-
!align=left {{table heading style}} |Synonyms
||
''DNA-binding membrane protein required for chromosome resolution and partitioning<ref name='LIB:Riley_2006'/>, B0890<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DinH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FtsK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , dinH, ECK0881, JW0873, b0890''
|-
!align=left {{table heading style}} |Product description
||
essential cell division protein FtsK <ref name='PMID:9723913'/><ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;

Component of [[:Category:Complex:Xer site-specific recombination system|Xer site-specific recombination system]]<ref name='LIB:EcoCyc11.1'/><ref name='PMID:12034757'/>

DNA translocase at septal ring sorting daughter chromsomes<ref name='LIB:EcoGene'/><ref name='PMID:12034757'/>

Couples cell division and chromosome segregation. <ref name='PMID:1596604'/>

Required at an early step in septation. <ref name='PMID:9723913'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21613.R46aa4982a88b9&page=21613&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| {{Prettytable}} id="S46aa49840dbe9" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0051301
|
cell division
|
PMID:9721304
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:12034757
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0051301
|
cell division
|
PMID:7592387
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0000166
|
nucleotide binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002543
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:17805344
|
IMP: Inferred from Mutant Phenotype
|

|
P
|
expression of the cytoplasmic domain of FtsK facilitates chromosome segregation in ''parC(ts)'' and ''parE(ts)'' cells
|
complete
|-
|

|
GO:0000166
|
nucleotide binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0547
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005886
|
plasma membrane
|
PMID:10922461
|
EXP: Inferred from Experiment
|

|
C
|

|
complete
|-
|

|
GO:0005524
|
ATP binding
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002543
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0051301
|
cell division
|
PMID:9294448
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0005524
|
ATP binding
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0067
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006970
|
response to osmotic stress
|
PMID:9294448
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0005887
|
integral to plasma membrane
|
PMID:10922461
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
PMID:18722176
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0007049
|
cell cycle
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002543
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016887
|
ATPase activity
|
PMID:18722176
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0007049
|
cell cycle
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0131
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002543
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0159
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:12034757
|
IGI: Inferred from Genetic Interaction
|

|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
Missing: with/from
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:12034757
|
IGI: Inferred from Genetic Interaction
|
UniProtKB:P0A734
UniProtKB:P0AEZ3
UniProtKB:P18196

|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0015616
|
DNA translocase activity
|
PMID:16301526
|
IDA: Inferred from Direct Assay
|

|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0043565
|
sequence-specific DNA binding
|
PMID:17041598
|
IMP: Inferred from Mutant Phenotype
|

|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0043565
|
sequence-specific DNA binding
|
PMID:17057717
|
IDA: Inferred from Direct Assay
|

|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0045941
|
positive regulation of transcription
|
PMID:9294448
|
IMP: Inferred from Mutant Phenotype
|

|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
PMID:9723913
|
IDA: Inferred from Direct Assay
|

|
C
|

|
complete
|-
|

|
GO:0016020
|
membrane
|
PMID:10922461
|
IDA: Inferred from Direct Assay
|

|
C
|

|
complete
|-
|

|
GO:0071236
|
cellular response to antibiotic
|
PMID:9723913
|
IMP: Inferred from Mutant Phenotype
|

|
P
|
mitomycin C
|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:9829960
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0015616
|
DNA translocase activity
|
PMID:19854947
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0016887
|
ATPase activity
|
PMID:19854947
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:19854947
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0051301
|
cell division
|
PMID:9829960
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:19854947
|
IPI: Inferred from Physical Interaction
|
UniProtKB:P0A8P6
UniProtKB:P0A8P8

|
P
|

|
complete
|-
|

|
GO:0045893
|
positive regulation of transcription, DNA-dependent
|
PMID:9294448
|
IMP: Inferred from Mutant Phenotype
|

|
P
|
increases P''uspA'' activity in stationary phase
|
complete
|-
|
Contributes to
|
GO:0006265
|
DNA topological change
|
PMID:20081205
|
IDA: Inferred from Direct Assay
|

|
P
|
stimulates Topo IV's ability to relax positively supercoiled DNA
|
complete
|-
|

|
GO:0009651
|
response to salt stress
|
PMID:9294448
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|
Contributes to
|
GO:0007059
|
chromosome segregation
|
PMID:20081205
|
IDA: Inferred from Direct Assay
|

|
P
|
stimulates Topo IV's decatenation ability
|
complete
|-
|

|
GO:0000920
|
cytokinetic cell separation
|
PMID:9294448
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:12034757
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0007059
|
chromosome segregation
|
PMID:12034757
|
IGI: Inferred from Genetic Interaction
|
UniProtKB:P0A734
UniProtKB:P0AEZ3
UniProtKB:P18196

|
P
|

|
complete

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21613.S46aa49840dbe9&page=21613&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| {{Prettytable}} id="T46aa498d2fdf4" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
Subunits of [[:Category:Complex:Xer site-specific recombination system|Xer site-specific recombination system]]
|
could be indirect
|

|

|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-888719 
|-
|
Protein
|
rpsJ
|

|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
yfiD
|

|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
ParC subunit of Topo IV
|
PMID:12939258
|

|

|-
|
Protein
|
Either subunit of the XerCD Recombinase
|

|
PMID:19854947
|
Triplex Displacement Assays
|-
|
Protein
|
FtsZ and FtsA
|
FtsK localization depends on FtsZ and FtsA prior localization
|
PMID:9723913
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21613.T46aa498d2fdf4&page=21613&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| {{Prettytable}} id="M46aa498e3f43d" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
|-
|
plasma membrane
|
C-terminus localized in the cytoplasm with 6 predicted transmembrane domains
|
Daley et al. (2005) <ref name=PMID:15919996/>
|

|

|-
|
Inner membrane
|
GFP fusion localization
|
PMID:9495771
|
Signal sequence in the N-terminal domain of the protein
|

|-
|
Inner membrane
|
PhoA and beta-gal assays
|
PMID:10922461
|

|

|-
|
Cytosol
|
FtsK (818-1329)
|
Microscopy
|
PMID:11114887
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21613.M46aa498e3f43d&page=21613&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="R46aa498fab9bb" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Name
||

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=G6464-MONOMER at EcoCyc]
<pre>MSQEYIEDKE VTLTKLSSGR RLLEALLILI VLFAVWLMAA LLSFNPSDPS WSQTAWHEPI
HNLGGMPGAW LADTLFFIFG VMAYTIPVII VGGCWFAWRH QSSDEYIDYF AVSLRIIGVL
ALILTSCGLA AINADDIWYF ASGGVIGSLL STTLQPLLHS SGGTIALLCV WAAGLTLFTG
WSWVTIAEKL GGWILNILTF ASNRTRRDDT WVDEDEYEDD EEYEDENHGK QHESRRARIL
RGALARRKRL AEKFINPMGR QTDAALFSGK RMDDDEEITY TARGVAADPD DVLFSGNRAT
QPEYDEYDPL LNGAPITEPV AVAAAATTAT QSWAAPVEPV TQTPPVASVD VPPAQPTVAW
QPVPGPQTGE PVIAPAPEGY PQQSQYAQPA VQYNEPLQQP VQPQQPYYAP AAEQPAQQPY
YAPAPEQPVA GNAWQAEEQQ STFAPQSTYQ TEQTYQQPAA QEPLYQQPQP VEQQPVVEPE
PVVEETKPAR PPLYYFEEVE EKRAREREQL AAWYQPIPEP VKEPEPIKSS LKAPSVAAVP
PVEAAAAVSP LASGVKKATL ATGAAATVAA PVFSLANSGG PRPQVKEGIG PQLPRPKRIR
VPTRRELASY GIKLPSQRAA EEKAREAQRN QYDSGDQYND DEIDAMQQDE LARQFAQTQQ
QRYGEQYQHD VPVNAEDADA AAEAELARQF AQTQQQRYSG EQPAGANPFS LDDFEFSPMK
ALLDDGPHEP LFTPIVEPVQ QPQQPVAPQQ QYQQPQQPVP PQPQYQQPQQ PVAPQPQYQQ
PQQPVAPQQQ YQQPQQPVAP QQQYQQPQQP VAPQPQDTLL HPLLMRNGDS RPLHKPTTPL
PSLDLLTPPP SEVEPVDTFA LEQMARLVEA RLADFRIKAD VVNYSPGPVI TRFELNLAPG
VKAARISNLS RDLARSLSTV AVRVVEVIPG KPYVGLELPN KKRQTVYLRE VLDNAKFRDN
PSPLTVVLGK DIAGEPVVAD LAKMPHLLVA GTTGSGKSVG VNAMILSMLY KAQPEDVRFI
MIDPKMLELS VYEGIPHLLT EVVTDMKDAA NALRWCVNEM ERRYKLMSAL GVRNLAGYNE
KIAEADRMMR PIPDPYWKPG DSMDAQHPVL KKEPYIVVLV DEFADLMMTV GKKVEELIAR
LAQKARAAGI HLVLATQRPS VDVITGLIKA NIPTRIAFTV SSKIDSRTIL DQAGAESLLG
MGDMLYSGPN STLPVRVHGA FVRDQEVHAV VQDWKARGRP QYVDGITSDS ESEGGAGGFD
GAEELDPLFD QAVQFVTEKR KASISGVQRQ FRIGYNRAAR IIEQMEAQGI VSEQGHNGNR
EVLAPPPFD</pre>
|-
!align=left {{table heading style}} |Length
||
1,329
|-
!align=left {{table heading style}} |Mol. Wt
||
146.661 kDa
|-
!align=left {{table heading style}} |pI
||
4.8 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
173,040 - 173,540 (calc based on 46 Y, 19 W, and 4 C residues)

|- class="tableEdit_footer"
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|}


<big>'''Domains/Motifs/Modification Sites'''</big>
<table>
<tr align="left" valign="top">
<td>


{{Product_domains_motifs_help}}
{| id="C46aa4990131be" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
947..1161
|
[http://pfam.janelia.org/family/PF01580 PF01580 FtsK/SpoIIIE family]
|

|
PMID:19920124
|-
|
Domain
|
1261..1327
|
[http://pfam.janelia.org/family/PF09397 PF09397 Ftsk gamma domain]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}


</td>
<td>


<motif_map/>
{{TMHMM Picture|ftsK}}
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="S46a7db57eacb5" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=ftsK
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://www.proteinmodelportal.org/query/uniprot/P46889 Protein Model Portal]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21613.S46a7db57eacb5&page=21613&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===
* Membrane topology studies using ''phoA'' and ''lacZ'' fusions are described in Dorazi ''et al.''(2000)<ref name='PMID:10922461'/>

* Crystal structure of ''P. aeruginosa'' FtsK complexed with KOPS with a putative molecular mechanism for loading and translocation may be found in Lowe ''et al.'' (2008)<ref name='PMID:18722176'/>.

*FtsK links chromosome segregation to septation via its domain structure. The N-terminal domain is required for septation and its C-terminal domain is required for chromosome segregation<ref name='PMID:17511809'/>.

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="T46aa4990ac348" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
|-
|
Antibody
|
raised against FtsK(447-729)
|
isolated from rabbit <ref name='PMID:9723913'/>
|-
|
Purification protocol
|

|
*PMID:18722176
*PMID:20081205
*PMID:12939258
*PMID:11832210

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21613.T46aa4990ac348&page=21613&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="R46aa499104897" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/16128857 GI:16128857]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_415410.1 GeneID:945102]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003027&formSubmitReturn=1 ASAP:ABE-0003027]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.uniprot.org/uniprot/P46889 UniProtKB/Swiss-Prot:P46889]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6464 ECOCYC:G6464]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG13226 EcoGene:EG13226]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945102 GeneID:945102]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="R46a7db5b75b2f" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21613.R46a7db5b75b2f&page=21613&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]

yaaW:Gene

2012-06-15T22:06:15Z

Nathan: Table edited by Nathan via TableEdit

Template:GO table product

2012-06-13T22:10:10Z

Nathan:

<pre>
<headings>
Qualifier||qualifier|select||NOT|Contributes to|Colocalizes with|Obsolete GO term|Under review|Deprecated
GO ID||go_id|text
GO term name||go_term|GoTermLookup
Reference||refs|dbxref|unique|PMID|GO_REF|other
Evidence Code||evidence|select| |EXP: Inferred from Experiment|IDA: Inferred from Direct Assay|IPI: Inferred from Physical Interaction|IMP: Inferred from Mutant Phenotype|IGI: Inferred from Genetic Interaction|IEP: Inferred from Expression Pattern|ISS: Inferred from Sequence or Structural Similarity|ISO: Inferred from Sequence Orthology|ISA: Inferred from Sequence Alignment|ISM: Inferred from Sequence Model|IGC: Inferred from Genomic Context|IBA: Inferred from Biological Aspect of Ancestor|IBD: Inferred from Biological Aspect of Descendant|IKR: Inferred from Key Residues|IRD: Inferred from Rapid Divergence|RCA: inferred from Reviewed Computational Analysis|TAS: Traceable Author Statement|NAS: Non-traceable Author Statement|IC: Inferred by Curator|ND: No Biological Data Available|IEA: Inferred from Electronic Annotation
with/from||with|go_annotation|EcoliWiki|UniProtKB|InterPro|EcoCyc|GO|PMID|NCBI
Aspect||aspect|AspectLookup
Notes||Notes
Status||status|go_annotation
</headings>
<heading_style>{{table_heading_style}}</heading_style>
[[Category:Table templates|GO table product]]
<above>{{Product_GO_help}}</above>
<help1>{{Product_GO_help}}</help1>
<datatable>1</datatable>
</pre>

Template:GO table product

2012-06-13T22:08:19Z

Nathan:

<pre>
<headings>
Qualifier||qualifier|select||NOT|Contributes to|Colocalizes with|Obsolete GO term|Under review|Deprecated
GO ID||go_id|text
GO term name||go_term|GoTermLookup
Reference||refs|dbxref|unique|PMID|GO_REF|other
Evidence Code||evidence|select| |EXP: Inferred from Experiment|IDA: Inferred from Direct Assay|IPI: Inferred from Physical Interaction|IMP: Inferred from Mutant Phenotype|IGI: Inferred from Genetic Interaction|IEP: Inferred from Expression Pattern|ISS: Inferred from Sequence or Structural Similarity|ISO: Inferred from Sequence Orthology|ISA: Inferred from Sequence Alignment|ISM: Inferred from Sequence Model|IGC: Inferred from Genomic Context|IBA: Inferred from Biological Aspect of Ancestor|IBD: Inferred from Biological Aspect of Descendant|IKR: Inferred from Key Residues|IRD: Inferred from Rapid Divergence|RCA: inferred from Reviewed Computational Analysis|TAS: Traceable Author Statement|NAS: Non-traceable Author Statement|IC: Inferred by Curator|ND: No Biological Data Available|IEA: Inferred from Electronic Annotation
with/from||with|go_annotation|EcoliWiki|UniProtKB|InterPro|EcoCyc|GO|PMID|NCBI|Other
Aspect||aspect|AspectLookup
Notes||Notes
Status||status|go_annotation
</headings>
<heading_style>{{table_heading_style}}</heading_style>
[[Category:Table templates|GO table product]]
<above>{{Product_GO_help}}</above>
<help1>{{Product_GO_help}}</help1>
<datatable>1</datatable>
</pre>

plaP:Gene Product(s)

2012-06-13T20:14:51Z

Nathan: Table edited by Nathan via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|plaP}}{{Tab|Gene|plaP}}{{Tab On|Gene Product(s)|plaP}}{{Tab|Expression|plaP}}{{Tab|Evolution|plaP}}{{Tab|On One Page|plaP}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="I46aa8c20319f1" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
PlaP
|-
!align=left {{table heading style}} |Synonyms
||
''predicted amino-acid transporter<ref name='LIB:Riley_2006'/>, B2014<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YeeF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , PlaP, ECK2008, JW5330, b2014''
|-
!align=left {{table heading style}} |Product description
||
YeeF amino acid APC transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Required for swarming phenotype, function unknown; predicted transporter<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Q46aa8c213b454" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005886
|
plasma membrane
|
GOA:spkw
SP_KW:GO_REF
|
IEA: Inferred from Electronic Annotation
|

SP_KW:KW-0997

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005886
|
plasma membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-1003
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006810
|
transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004841
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006810
|
transport
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0813
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006865
|
amino acid transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006865
|
amino acid transport
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0029
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0015171
|
amino acid transmembrane transporter activity
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004841
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0472
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016021
|
integral to membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0812
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016021
|
integral to membrane
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-9909
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0055085
|
transmembrane transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0055085
|
transmembrane transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004841
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0015489
|
putrescine transmembrane transporter activity
|
PMID:21266585
|
IGI: Inferred from Genetic Interaction
|
UniProtKB:P0AFK4
UniProtKB:P0AFK6
UniProtKB:P0AFK9
UniProtKB:P0AFR9
UniProtKB:P21169
UniProtKB:P21170
UniProtKB:P60651
UniProtKB:P69874
UniProtKB:P76108
UniProtKB:P77156
UniProtKB:P77795

|
F
|
see Fig 4.
|
complete
|-
|

|
GO:0048870
|
cell motility
|
PMID:21266585
|
IGI: Inferred from Genetic Interaction
|
UniProtKB:P0AFK4
UniProtKB:P0AFK6
UniProtKB:P0AFK9
UniProtKB:P0AFR9
UniProtKB:P21169
UniProtKB:P21170
UniProtKB:P60651
UniProtKB:P69874
UniProtKB:P76108
UniProtKB:P77156
UniProtKB:P77795

|
P
|

|
complete

|- class="tableEdit_footer"
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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="Y46aa8c2431776" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.Y46aa8c2431776&page=24150&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="E46aa8c24e9a89" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
|-
|
plasma membrane
|
C-terminus localized in the cytoplasm with 12 predicted transmembrane domains
|
Daley et al. (2005) <ref name=PMID:15919996/>
|

|

|-
|
plasma membrane
|

|

|
From EcoCyc<ref name='LIB:EcoCyc11.1'/>
|

|- class="tableEdit_footer"
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|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa8c2682e4e" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Name
||

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=YEEF-MONOMER at EcoCyc]
<pre>MTMSHNVTPN TSRVELRKTL TLVPVVMMGL AYMQPMTLFD TFGIVSGLTD GHVPTAYAFA
LIAILFTALS YGKLVRRYPS AGSAYTYAQK SISPTVGFMV GWSSLLDYLF APMINILLAK
IYFEALVPSI PSWMFVVALV AFMTAFNLRS LKSVANFNTV IVVLQVVLIA VILGMVVYGV
FEGEGAGTLA STRPFWSGDA HVIPMITGAT ILCFSFTGFD GISNLSEETK DAERVIPRAI
FLTALIGGMI FIFATYFLQL YFPDISRFKD PDASQPEIML YVAGKAFQVG ALIFSTITVL
ASGMAAHAGV ARLMYVMGRD GVFPKSFFGY VHPKWRTPAM NIILVGAIAL LAINFDLVMA
TALINFGALV AFTFVNLSVI SQFWIREKRN KTLKDHFQYL FLPMCGALTV GALWVNLEES
SMVLGLIWAA IGLIYLACVT KSFRNPVPQY EDVA</pre>
|-
!align=left {{table heading style}} |Length
||
454
|-
!align=left {{table heading style}} |Mol. Wt
||
49.771 kDa
|-
!align=left {{table heading style}} |pI
||
9.0 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
63,830 - 64,205 (calc based on 17 Y, 7 W, and 3 C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.T46aa8c2682e4e&page=24150&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big>
<table>
<tr align="left" valign="top">
<td>


{{Product_domains_motifs_help}}
{| id="I46aa8c26ef453" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
22..438
|
[http://pfam.janelia.org/family/PF00324 PF00324 Amino acid permease]
|

|
PMID:19920124

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.I46aa8c26ef453&page=24150&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}


</td>
<td>


<motif_map/>
{{TMHMM Picture|yeeF}}
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="W46a81f60d0548" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=yeeF
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://www.proteinmodelportal.org/query/uniprot/P0AA47 Protein Model Portal]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.W46a81f60d0548&page=24150&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="O46aa8c27b44d1" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.O46aa8c27b44d1&page=24150&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="G46aa8c281c2e9" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/90111370 GI:90111370]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_416518.2 GeneID:946533]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006696&formSubmitReturn=1 ASAP:ABE-0006696]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.uniprot.org/uniprot/P0AA47 UniProtKB/Swiss-Prot:P0AA47]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11896 ECOCYC:EG11896]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11896 EcoGene:EG11896]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946533 GeneID:946533]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Q46a81f63b0341" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.Q46a81f63b0341&page=24150&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]

plaP:Gene Product(s)

2012-06-13T20:14:13Z

Nathan: Table edited by Nathan via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|plaP}}{{Tab|Gene|plaP}}{{Tab On|Gene Product(s)|plaP}}{{Tab|Expression|plaP}}{{Tab|Evolution|plaP}}{{Tab|On One Page|plaP}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="I46aa8c20319f1" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
PlaP
|-
!align=left {{table heading style}} |Synonyms
||
''predicted amino-acid transporter<ref name='LIB:Riley_2006'/>, B2014<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YeeF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , PlaP, ECK2008, JW5330, b2014''
|-
!align=left {{table heading style}} |Product description
||
YeeF amino acid APC transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Required for swarming phenotype, function unknown; predicted transporter<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Q46aa8c213b454" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005886
|
plasma membrane
|
SP_KW:GO_REF
GOA:spkw
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0997

test
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005886
|
plasma membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-1003
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006810
|
transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004841
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006810
|
transport
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0813
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006865
|
amino acid transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0006865
|
amino acid transport
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0029
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0015171
|
amino acid transmembrane transporter activity
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004841
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016020
|
membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0472
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016021
|
integral to membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0812
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016021
|
integral to membrane
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-9909
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0055085
|
transmembrane transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002293
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0055085
|
transmembrane transport
|
GOA:interpro GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004841
|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0015489
|
putrescine transmembrane transporter activity
|
PMID:21266585
|
IGI: Inferred from Genetic Interaction
|
UniProtKB:P0AFK4
UniProtKB:P0AFK6
UniProtKB:P0AFK9
UniProtKB:P0AFR9
UniProtKB:P21169
UniProtKB:P21170
UniProtKB:P60651
UniProtKB:P69874
UniProtKB:P76108
UniProtKB:P77156
UniProtKB:P77795

|
F
|
see Fig 4.
|
complete
|-
|

|
GO:0048870
|
cell motility
|
PMID:21266585
|
IGI: Inferred from Genetic Interaction
|
UniProtKB:P0AFK4
UniProtKB:P0AFK6
UniProtKB:P0AFK9
UniProtKB:P0AFR9
UniProtKB:P21169
UniProtKB:P21170
UniProtKB:P60651
UniProtKB:P69874
UniProtKB:P76108
UniProtKB:P77156
UniProtKB:P77795

|
P
|

|
complete

|- class="tableEdit_footer"
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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="Y46aa8c2431776" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.Y46aa8c2431776&page=24150&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="E46aa8c24e9a89" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
|-
|
plasma membrane
|
C-terminus localized in the cytoplasm with 12 predicted transmembrane domains
|
Daley et al. (2005) <ref name=PMID:15919996/>
|

|

|-
|
plasma membrane
|

|

|
From EcoCyc<ref name='LIB:EcoCyc11.1'/>
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.E46aa8c24e9a89&page=24150&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="T46aa8c2682e4e" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Name
||

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=YEEF-MONOMER at EcoCyc]
<pre>MTMSHNVTPN TSRVELRKTL TLVPVVMMGL AYMQPMTLFD TFGIVSGLTD GHVPTAYAFA
LIAILFTALS YGKLVRRYPS AGSAYTYAQK SISPTVGFMV GWSSLLDYLF APMINILLAK
IYFEALVPSI PSWMFVVALV AFMTAFNLRS LKSVANFNTV IVVLQVVLIA VILGMVVYGV
FEGEGAGTLA STRPFWSGDA HVIPMITGAT ILCFSFTGFD GISNLSEETK DAERVIPRAI
FLTALIGGMI FIFATYFLQL YFPDISRFKD PDASQPEIML YVAGKAFQVG ALIFSTITVL
ASGMAAHAGV ARLMYVMGRD GVFPKSFFGY VHPKWRTPAM NIILVGAIAL LAINFDLVMA
TALINFGALV AFTFVNLSVI SQFWIREKRN KTLKDHFQYL FLPMCGALTV GALWVNLEES
SMVLGLIWAA IGLIYLACVT KSFRNPVPQY EDVA</pre>
|-
!align=left {{table heading style}} |Length
||
454
|-
!align=left {{table heading style}} |Mol. Wt
||
49.771 kDa
|-
!align=left {{table heading style}} |pI
||
9.0 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
63,830 - 64,205 (calc based on 17 Y, 7 W, and 3 C residues)

|- class="tableEdit_footer"
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|}


<big>'''Domains/Motifs/Modification Sites'''</big>
<table>
<tr align="left" valign="top">
<td>


{{Product_domains_motifs_help}}
{| id="I46aa8c26ef453" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
22..438
|
[http://pfam.janelia.org/family/PF00324 PF00324 Amino acid permease]
|

|
PMID:19920124

|- class="tableEdit_footer"
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|}


</td>
<td>


<motif_map/>
{{TMHMM Picture|yeeF}}
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="W46a81f60d0548" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=yeeF
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://www.proteinmodelportal.org/query/uniprot/P0AA47 Protein Model Portal]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.W46a81f60d0548&page=24150&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="O46aa8c27b44d1" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.O46aa8c27b44d1&page=24150&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="G46aa8c281c2e9" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/90111370 GI:90111370]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_416518.2 GeneID:946533]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006696&formSubmitReturn=1 ASAP:ABE-0006696]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.uniprot.org/uniprot/P0AA47 UniProtKB/Swiss-Prot:P0AA47]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11896 ECOCYC:EG11896]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11896 EcoGene:EG11896]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946533 GeneID:946533]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Q46a81f63b0341" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24150.Q46a81f63b0341&page=24150&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]

Sandbox

2012-05-24T21:05:55Z

Nathan:

funny

Sandbox

2012-05-24T21:05:32Z

Nathan: Replaced content with "{{Tab|foo|bar}}"

Phage MS2 rep:Gene

2012-01-05T23:25:52Z

Nathan: Table edited by Nathan via TableEdit

Phage MS2 rep:Gene

2012-01-05T23:24:54Z

Nathan: Table edited by Nathan via TableEdit