EcoliWiki - User contributions [en]

Template:TableHelpHorizontal

2007-11-26T01:05:49Z

NBauer: /* Editing and Entering Information */ - Paragraph referenced a "DNA" row in the table image when no such row was present.

==Editing and Entering Information==
Editing and Entering Information into the tables is relatively simple. Below, we walk you through adding new data or editing data already there.

[[Image:HorizonAdd.jpg|thumb|left|600px]] After clicking on the '''Edit Table''' link, an editable version of the table will appear, such as the one on the left.
 
 

[[Image:HorizonBlanks.jpg|thumb|left|600px]] Adding data is done by clicking the '''Add Data''' button at the bottom of the table. This will generate editable boxes for adding information. Please note that the titles of the boxes in the pictures may be different from the table you are editing.

You can choose to protect the data entered if you don't wish anyone else (except the EcoliWiki Team) to modify it. Use the pull-down menu to select either public or private.

After entering the information, click on the '''Save''' button at the bottom of the table.
 
 

[[image:HorizonEdit.jpg|thumb|left|600px]] There may be information already in the table that you wish to change.

Please note that data marked protected has been added by Wiki scripts and cannot be edited, such as the information in the row titled Protein in our example on the left. However, if you consider something to be wrong or needing to be changed, we encourage you to make your voice heard by editing the table or writing in the section marked Notes below the table.

Content that has been added by the community can be edited. In the image to the left, the second row entitled Protein can be edited. To do this, click on the '''Edit''' button at the end of the row that you wish to edit. You can choose to protect the data entered if you don't wish anyone else (except the EcoliWiki Team) to modify it. Use the pull-down menu to select either public or private.

After entering the information, click on the '''Save''' button at the table.
 
 

Whether you've entered data or edited data, it will need to be saved. In the above examples, the data has been saved so that the user can see an updated version of the table. To save the data to the actual Wiki page, click on the '''Save Table to Wiki Page''' button at the bottom of the updated table to save the table to the original page.

The EcoliWiki Team thanks you for your contribution!
<includeonly>[[Category:Help]]</includeonly>

rpoS:Expression

2007-11-08T02:33:12Z

NBauer: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rpoS}}{{Tab|Gene|rpoS}}{{Tab|Gene Product(s)|rpoS}}{{Tab On|Expression|rpoS}}{{Tab|Evolution|rpoS}}{{Tab|On One Page|rpoS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Overview==
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|

{|class = 'sortable' {{Prettytable}} id='198600'
|- {{table heading style}}
!Transcription unit(s)
|-
|
[[:Category:Txn_unit:rpoS|rpoS]]
|-
|
[[:Category:Txn_unit:nlpD-rpoS|nlpD-rpoS]]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.O46ab6cea5e710&page=39630&pagename={{FULLPAGENAMEE}} edit table]
|}
||{{RegulonDBfig|ECK120000503.jpg|RPOS}}
|}
{{expression_transcription_help}}
</protect>
===Notes===
Note: This image from RegulonDB is wrong. ''nlpD'' should begin just downstream of the ''nlpD''p1 and ''nlpD''p2 promoters. See Figure 2 of Hengge-Aronis (2002)<ref name='PMID:12208995'/> ; see also the ''rpoS'' [http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc entry].

==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|2865553|2865593|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
</protect>
===Notes===
{{Expression_translation_placeholder}}

==Turnover and Regulation of Turnover==
</protect>

===Notes===
{{Expression_turnover_placeholder}}

==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>


{|class = 'sortable' {{Prettytable}} id='198601'
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.D46ab6ceb2d108&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Expression_allele_table_help}}

<big>'''Expression Studies'''</big>


{|class = 'sortable' {{Prettytable}} id='198602'
|- {{table heading style}}
!Type!!Reference!!Notes
|-
|
microarray
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for rpoS from multiple microarray studies
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.V46ab6ceb9a556&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_studies_table_help}}

<big>'''Expression Resources'''</big>


{|class = 'sortable' {{Prettytable}} id='198603'
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.H46ab6cec129ea&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Expression_resource_table_help}}
<protect></protect>
===Notes===

==Accessions Related to ''rpoS'' Expression==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='198604'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.A46ab6cec81191&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_accessions_table_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='104901'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.R46a7cb43d7367&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:rpoS]]
[[Category:Txn_unit:nlpD-rpoS]]

rpoS:Expression

2007-11-08T02:32:31Z

NBauer: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rpoS}}{{Tab|Gene|rpoS}}{{Tab|Gene Product(s)|rpoS}}{{Tab On|Expression|rpoS}}{{Tab|Evolution|rpoS}}{{Tab|On One Page|rpoS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Overview==
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|

{|class = 'sortable' {{Prettytable}} id='198600'
|- {{table heading style}}
!Transcription unit(s)
|-
|
[[:Category:Txn_unit:rpoS|rpoS]]
|-
|
[[:Category:Txn_unit:nlpD-rpoS|nlpD-rpoS]]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.O46ab6cea5e710&page=39630&pagename={{FULLPAGENAMEE}} edit table]
|}
||{{RegulonDBfig|ECK120000503.jpg|RPOS}}
|}
{{expression_transcription_help}}
</protect>
===Notes===
Note: This image from RegulonDB is wrong. ''nlpD'' should begin just downstream of the ''nlpD''p1 and ''nlpD''p2 promoters. See Figure 2 of (Hengge-Aronis, 2002)<ref name='PMID:12208995'/> ; see also the ''rpoS'' [http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc entry].

==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|2865553|2865593|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
</protect>
===Notes===
{{Expression_translation_placeholder}}

==Turnover and Regulation of Turnover==
</protect>

===Notes===
{{Expression_turnover_placeholder}}

==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>


{|class = 'sortable' {{Prettytable}} id='198601'
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.D46ab6ceb2d108&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Expression_allele_table_help}}

<big>'''Expression Studies'''</big>


{|class = 'sortable' {{Prettytable}} id='198602'
|- {{table heading style}}
!Type!!Reference!!Notes
|-
|
microarray
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for rpoS from multiple microarray studies
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.V46ab6ceb9a556&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_studies_table_help}}

<big>'''Expression Resources'''</big>


{|class = 'sortable' {{Prettytable}} id='198603'
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.H46ab6cec129ea&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Expression_resource_table_help}}
<protect></protect>
===Notes===

==Accessions Related to ''rpoS'' Expression==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='198604'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.A46ab6cec81191&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_accessions_table_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='104901'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.R46a7cb43d7367&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:rpoS]]
[[Category:Txn_unit:nlpD-rpoS]]

rpoS:Expression

2007-11-08T02:30:39Z

NBauer: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rpoS}}{{Tab|Gene|rpoS}}{{Tab|Gene Product(s)|rpoS}}{{Tab On|Expression|rpoS}}{{Tab|Evolution|rpoS}}{{Tab|On One Page|rpoS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Overview==
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|

{|class = 'sortable' {{Prettytable}} id='198600'
|- {{table heading style}}
!Transcription unit(s)
|-
|
[[:Category:Txn_unit:rpoS|rpoS]]
|-
|
[[:Category:Txn_unit:nlpD-rpoS|nlpD-rpoS]]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.O46ab6cea5e710&page=39630&pagename={{FULLPAGENAMEE}} edit table]
|}
||{{RegulonDBfig|ECK120000503.jpg|RPOS}}
|}
{{expression_transcription_help}}
</protect>
===Notes===
Note: This image from RegulonDB is wrong. ''nlpD'' should begin just downstream of the ''nlpD''p1 and ''nlpD''p2 promoters. See Figure 2 of (Hengge-Aronis, 2002)<ref name='PMID:12208995'/> ; see also EcoCyc entry.

==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|2865553|2865593|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
</protect>
===Notes===
{{Expression_translation_placeholder}}

==Turnover and Regulation of Turnover==
</protect>

===Notes===
{{Expression_turnover_placeholder}}

==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>


{|class = 'sortable' {{Prettytable}} id='198601'
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.D46ab6ceb2d108&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Expression_allele_table_help}}

<big>'''Expression Studies'''</big>


{|class = 'sortable' {{Prettytable}} id='198602'
|- {{table heading style}}
!Type!!Reference!!Notes
|-
|
microarray
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for rpoS from multiple microarray studies
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.V46ab6ceb9a556&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_studies_table_help}}

<big>'''Expression Resources'''</big>


{|class = 'sortable' {{Prettytable}} id='198603'
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.H46ab6cec129ea&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Expression_resource_table_help}}
<protect></protect>
===Notes===

==Accessions Related to ''rpoS'' Expression==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='198604'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.A46ab6cec81191&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_accessions_table_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='104901'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.R46a7cb43d7367&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:rpoS]]
[[Category:Txn_unit:nlpD-rpoS]]

rpoS:Expression

2007-11-08T02:27:10Z

NBauer: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rpoS}}{{Tab|Gene|rpoS}}{{Tab|Gene Product(s)|rpoS}}{{Tab On|Expression|rpoS}}{{Tab|Evolution|rpoS}}{{Tab|On One Page|rpoS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Overview==
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|

{|class = 'sortable' {{Prettytable}} id='198600'
|- {{table heading style}}
!Transcription unit(s)
|-
|
[[:Category:Txn_unit:rpoS|rpoS]]
|-
|
[[:Category:Txn_unit:nlpD-rpoS|nlpD-rpoS]]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.O46ab6cea5e710&page=39630&pagename={{FULLPAGENAMEE}} edit table]
|}
||{{RegulonDBfig|ECK120000503.jpg|RPOS}}
|}
{{expression_transcription_help}}
</protect>
===Notes===
Note: This image from RegulonDB is wrong. ''nlpD'' should begin just downstream of the ''nlpD''p1 and ''nlpD''p2 promoters. See Figure 2 of <ref name='PMID:12208995'/> (Hengge-Aronis, 2002); see also EcoCyc accession below.

==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|2865553|2865593|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
</protect>
===Notes===
{{Expression_translation_placeholder}}

==Turnover and Regulation of Turnover==
</protect>

===Notes===
{{Expression_turnover_placeholder}}

==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>


{|class = 'sortable' {{Prettytable}} id='198601'
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.D46ab6ceb2d108&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Expression_allele_table_help}}

<big>'''Expression Studies'''</big>


{|class = 'sortable' {{Prettytable}} id='198602'
|- {{table heading style}}
!Type!!Reference!!Notes
|-
|
microarray
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for rpoS from multiple microarray studies
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.V46ab6ceb9a556&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_studies_table_help}}

<big>'''Expression Resources'''</big>


{|class = 'sortable' {{Prettytable}} id='198603'
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.H46ab6cec129ea&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Expression_resource_table_help}}
<protect></protect>
===Notes===

==Accessions Related to ''rpoS'' Expression==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='198604'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.A46ab6cec81191&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_accessions_table_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='104901'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.R46a7cb43d7367&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:rpoS]]
[[Category:Txn_unit:nlpD-rpoS]]

rpoS:Expression

2007-11-08T02:26:29Z

NBauer: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rpoS}}{{Tab|Gene|rpoS}}{{Tab|Gene Product(s)|rpoS}}{{Tab On|Expression|rpoS}}{{Tab|Evolution|rpoS}}{{Tab|On One Page|rpoS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Overview==
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|

{|class = 'sortable' {{Prettytable}} id='198600'
|- {{table heading style}}
!Transcription unit(s)
|-
|
[[:Category:Txn_unit:rpoS|rpoS]]
|-
|
[[:Category:Txn_unit:nlpD-rpoS|nlpD-rpoS]]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.O46ab6cea5e710&page=39630&pagename={{FULLPAGENAMEE}} edit table]
|}
||{{RegulonDBfig|ECK120000503.jpg|RPOS}}
|}
{{expression_transcription_help}}
</protect>
===Notes===
Note: This image from RegulonDB is wrong. ''nlpD'' should begin just downstream of the nlpDp1 and nlpDp2 promoters. See Figure 2 of <ref name='PMID:12208995'/> (Hengge-Aronis, 2002); see also EcoCyc accession below.

==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|2865553|2865593|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
</protect>
===Notes===
{{Expression_translation_placeholder}}

==Turnover and Regulation of Turnover==
</protect>

===Notes===
{{Expression_turnover_placeholder}}

==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>


{|class = 'sortable' {{Prettytable}} id='198601'
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.D46ab6ceb2d108&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Expression_allele_table_help}}

<big>'''Expression Studies'''</big>


{|class = 'sortable' {{Prettytable}} id='198602'
|- {{table heading style}}
!Type!!Reference!!Notes
|-
|
microarray
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for rpoS from multiple microarray studies
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.V46ab6ceb9a556&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_studies_table_help}}

<big>'''Expression Resources'''</big>


{|class = 'sortable' {{Prettytable}} id='198603'
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.H46ab6cec129ea&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Expression_resource_table_help}}
<protect></protect>
===Notes===

==Accessions Related to ''rpoS'' Expression==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='198604'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.A46ab6cec81191&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_accessions_table_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='104901'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.R46a7cb43d7367&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:rpoS]]
[[Category:Txn_unit:nlpD-rpoS]]

rpoS:Expression

2007-11-08T02:26:07Z

NBauer: /* Notes */

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rpoS}}{{Tab|Gene|rpoS}}{{Tab|Gene Product(s)|rpoS}}{{Tab On|Expression|rpoS}}{{Tab|Evolution|rpoS}}{{Tab|On One Page|rpoS}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Overview==
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|

{|class = 'sortable' {{Prettytable}} id='198600'
|- {{table heading style}}
!Transcription unit(s)
|-
|
[[:Category:Txn_unit:rpoS|rpoS]]
|-
|
[[:Category:Txn_unit:nlpD-rpoS|nlpD-rpoS]]
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.O46ab6cea5e710&page=39630&pagename={{FULLPAGENAMEE}} edit table]
|}
||{{RegulonDBfig|ECK120000503.jpg|RPOS}}
|}
{{expression_transcription_help}}
</protect>
===Notes===
{{Expression_transcription_placeholder}}

Note: This image from RegulonDB is wrong. ''nlpD'' should begin just downstream of the nlpDp1 and nlpDp2 promoters. See Figure 2 of <ref name='PMID:12208995'/> (Hengge-Aronis, 2002); see also EcoCyc accession below.

==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|2865553|2865593|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
</protect>
===Notes===
{{Expression_translation_placeholder}}

==Turnover and Regulation of Turnover==
</protect>

===Notes===
{{Expression_turnover_placeholder}}

==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>


{|class = 'sortable' {{Prettytable}} id='198601'
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.D46ab6ceb2d108&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Expression_allele_table_help}}

<big>'''Expression Studies'''</big>


{|class = 'sortable' {{Prettytable}} id='198602'
|- {{table heading style}}
!Type!!Reference!!Notes
|-
|
microarray
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for rpoS from multiple microarray studies
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.V46ab6ceb9a556&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_studies_table_help}}

<big>'''Expression Resources'''</big>


{|class = 'sortable' {{Prettytable}} id='198603'
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.H46ab6cec129ea&page=39630&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Expression_resource_table_help}}
<protect></protect>
===Notes===

==Accessions Related to ''rpoS'' Expression==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='198604'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.A46ab6cec81191&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Expression_accessions_table_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='104901'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39630.R46a7cb43d7367&page=39630&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:rpoS]]
[[Category:Txn_unit:nlpD-rpoS]]

Membrane Protein Data Bank (MPDB)

2007-11-07T21:56:29Z

NBauer:

{{Pagetop}}
[[Category:Databases]]
[[Category:Protein Databases]]
[[Category:Structure Databases]]
{|{{Prettytable}} width='30%' align = 'right'
|- align='center' bgcolor = '#ddddff'
| colspan = '2' | '''{{PAGENAME}}'''
|-
| width='30%' | Who:
| ''Martin Caffrey''
|-
| width='30%' | What:
| ''A database for membrane proteins''
|-
| Where:
| [http://www.mpdb.ul.ie/ {{PAGENAME}}]
|-
| Updates
| The MPDB is updated weekly.
|-
| Upcoming events
| ''link to event calendar, if applicable''
|-
| Web Services
|
|}
=About {{PAGENAME}}=
The [http://www.mpdb.ul.ie/ Membrane Protein Data Bank or MPDB] is a publicly available database that contains structural information on integral, peripheral and anchored membrane proteins as well as peptides. The data included comes from the [http://www.rcsb.org/pdb/Welcome.do Protein Database], as well as literature and other databases.

=Content=
The MPDB contains structural information relating to membrane proteins and peptides. The structures in the database are based on X-ray and electron diffraction, nuclear magnetic resonance and cryo-electron microscopy.

=Using {{PAGENAME}}=
==Browsing==
==Searching==
The MPDB provides better searching then the PDB. Searching in the MPDB allowed for more flexibility and discriminiating query. Under the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm search]page, there are some standard searches. Due to its limited size, the curators of the database have implemented pull-down menu for searching by author. Additionally, there is a pull-down menu for co-crystalants, crystallization method, position in membrane, technique, expression system, family, function, jouranl, name and other conditions.

For a more customized search, the user can select [http://www.lipidat.chemistry.ohio-state.edu/MPDB/customseach.asp Customized Search] from the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm Search] area.

==Usage examples==

Other people have used the MPDB as shown in the following citations: 

=Other sites with related content=
[http://pdbtm.enzim.hu/ Protein Databank of Transmembrane Proteins] 
[http://www.rcsb.org Protein Databank]

=Technology=
==Web Services/API==
=Discussion=

=References=
Raman, P., Cherezov, V., Caffrey, M. 2006. The Membrane Protein Data Bank. Cell Mol. Life Sci. 63: 36-51 [http://www.springerlink.com/media/03x1mb08qr2xxvaedad3/contributions/7/q/8/m/7q8m567l3746663h.pdf PDF]

=External Links=
[http://{{{1|www.lipidat.chemistry.ohio-state.edu/MPDB/index.asp}}} {{PAGENAME}}]
==Discussion of {{PAGENAME}} on other websites==

Membrane Protein Data Bank (MPDB)

2007-11-07T21:55:49Z

NBauer: /* About {{PAGENAME}} */

{{Pagetop}}
[[Category:Databases]]
[[Category:Protein Databases]]
[[Category:Structure Databases]]
{|{{Prettytable}} width='30%' align = 'right'
|- align='center' bgcolor = '#ddddff'
| colspan = '2' | '''{{PAGENAME}}'''
|-
| width='30%' | Who:
| ''Martin Caffrey''
|-
| width='30%' | What:
| ''A database for membrane proteins''
|-
| Where:
| [http://www.lipidat.chemistry.ohio-state.edu/MPDB/index.asp {{PAGENAME}}]
|-
| Updates
| The MPDB is updated weekly.
|-
| Upcoming events
| ''link to event calendar, if applicable''
|-
| Web Services
|
|}
=About {{PAGENAME}}=
The [http://www.mpdb.ul.ie/ Membrane Protein Data Bank or MPDB] is a publicly available database that contains structural information on integral, peripheral and anchored membrane proteins as well as peptides. The data included comes from the [http://www.rcsb.org/pdb/Welcome.do Protein Database], as well as literature and other databases.

=Content=
The MPDB contains structural information relating to membrane proteins and peptides. The structures in the database are based on X-ray and electron diffraction, nuclear magnetic resonance and cryo-electron microscopy.

=Using {{PAGENAME}}=
==Browsing==
==Searching==
The MPDB provides better searching then the PDB. Searching in the MPDB allowed for more flexibility and discriminiating query. Under the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm search]page, there are some standard searches. Due to its limited size, the curators of the database have implemented pull-down menu for searching by author. Additionally, there is a pull-down menu for co-crystalants, crystallization method, position in membrane, technique, expression system, family, function, jouranl, name and other conditions.

For a more customized search, the user can select [http://www.lipidat.chemistry.ohio-state.edu/MPDB/customseach.asp Customized Search] from the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm Search] area.

==Usage examples==

Other people have used the MPDB as shown in the following citations: 

=Other sites with related content=
[http://pdbtm.enzim.hu/ Protein Databank of Transmembrane Proteins] 
[http://www.rcsb.org Protein Databank]

=Technology=
==Web Services/API==
=Discussion=

=References=
Raman, P., Cherezov, V., Caffrey, M. 2006. The Membrane Protein Data Bank. Cell Mol. Life Sci. 63: 36-51 [http://www.springerlink.com/media/03x1mb08qr2xxvaedad3/contributions/7/q/8/m/7q8m567l3746663h.pdf PDF]

=External Links=
[http://{{{1|www.lipidat.chemistry.ohio-state.edu/MPDB/index.asp}}} {{PAGENAME}}]
==Discussion of {{PAGENAME}} on other websites==