nusA:Gene

2007-08-10T19:31:08Z

Mwinkler: edited by Mwinkler via TableEdit

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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==Nomenclature==
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!{{table_heading_style}} |Standard name
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''nusA''
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!{{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
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''ECK3158, b3169, JW3138''<ref name='LIB:Riley_2006'/>
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===Notes===

==Location(s) and DNA Sequence==
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{|class = 'sortable' {{Prettytable}} id='143874'
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
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71.43 minutes 
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MG1655: 3315548..3314061<br />{{GBrowseFigureByCoord|3313061|3316548|ecoli|MG1655}}
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10665 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:3313061..3316548 GBrowse(MG1655)]

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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:3314061..3315548&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG10665 EcoCyc Sequence Dump]
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W3110
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W3110: 3317381..3315894<br />{{GBrowseFigureByCoord|3314894|3318381|ecoli_W3110|W3110}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:3314894..3318381 GBrowse(W3110)]
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:3315894..3317381&plugin_action=Go FASTA Dump]
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===Notes===

==Sequence Features==
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{|class = 'sortable' {{Prettytable}} id='143875'
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!Feature type!!Location!!Description
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====Notes====

==Alleles and Phenotypes==
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{|class = 'sortable' {{Prettytable}} id='143876'
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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ΔnusA (Keio:)
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deletion
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deletion
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[[PMID:16738554]]<ref name=PMID:16738554/>
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
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NusA is essential. Has this strain been verified?
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===Notes===

==Genetic Resources==
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{|class = 'sortable' {{Prettytable}} id='143877'
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!Resource!!Resource Type!!Source!!Notes/Reference
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JW3138
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>

Status:Clone OK

Primer 1:GCCAACAAAGAAATTTTGGCTGT

Primer 2:CCgGCTTCGTCACCGAACCAGCA
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[[aer:Gene|aer-3075::Tn10]]
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Linked marker
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CAG12152 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38761 CGSC7438]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>

Synonyms:zgh-3075::Tn10, zgj-3075::Tn10
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[[sfsB:Gene|sfsB203::Tn10]]
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Linked marker
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CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 54% <ref name='LIB:Nichols_linked_Tn'/>

Synonyms:zgj-203::Tn10, zha-203::Tn10
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===Notes===

==Accessions in Other Databases==
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{|class = 'sortable' {{Prettytable}} id='143878'
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!Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10665 EcoCyc:EG10665]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0659 EchoBASE:EB0659]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
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[http://chase.ou.edu/macro/searchlink.php?bnum=b3169 EcoliGenExpDB:b3169]
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C3926 ECOL199310CYC:C3926]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG10665 EcoGene:EG10665]
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOO157/new-image?object=NUSA ECOO157CYC:NUSA]
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/441 CGSC:441]
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===Notes===

==Links==
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!Name!!URL!!Comments
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==References==
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<references/>
__NOTOC__
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===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

EcoliWiki - User contributions [en]

nusA:Gene