EcoliWiki - User contributions [en]

free2bind

2010-07-07T15:25:42Z

Lance: /* User notes */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}
Free software for motif finding/prediction based on free energy calculations. Run as perl scripts to that call the package. Can be used for motif prediction in RNA or DNA and is capable of converting between the two, default is RNA.
Primary author Joshua Starmer.

== Links ==
Links to sites that run the software or where it can be obtained

Obtainable on [https://sourceforge.net/projects/free2bind/ SourceForge]

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==
Usage information and options can be viewed by type the name of the script followed by -h.
<pre>
$ perl free_align.pl -h
</pre>

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:16710451'/>
<references/>
[[Category:Bioinformatics Tools]]

free2bind

2010-07-07T15:25:21Z

Lance: /* User notes */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}
Free software for motif finding/prediction based on free energy calculations. Run as perl scripts to that call the package. Can be used for motif prediction in RNA or DNA and is capable of converting between the two, default is RNA.
Primary author Joshua Starmer.

== Links ==
Links to sites that run the software or where it can be obtained

Obtainable on [https://sourceforge.net/projects/free2bind/ SourceForge]

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==
Usage information and options can be viewed by type the name of the script followed by -h.
<pre>
$ perl free_align.pl -h
<pre>

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:16710451'/>
<references/>
[[Category:Bioinformatics Tools]]

free2bind

2010-07-07T15:25:07Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}
Free software for motif finding/prediction based on free energy calculations. Run as perl scripts to that call the package. Can be used for motif prediction in RNA or DNA and is capable of converting between the two, default is RNA.
Primary author Joshua Starmer.

== Links ==
Links to sites that run the software or where it can be obtained

Obtainable on [https://sourceforge.net/projects/free2bind/ SourceForge]

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==
Usage information and options can be viewed by type the name of the script followed by -h.
<pre>
$ perl free_align.pl -h
<per>

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:16710451'/>
<references/>
[[Category:Bioinformatics Tools]]

free2bind

2010-06-22T22:02:30Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}
Free software for motif finding/prediction based on energetics of a two sequences binding. Can be used for RNA or DNA.
Primary author Joshua Starmer.

== Links ==
Links to sites that run the software or where it can be obtained

Obtainable on [https://sourceforge.net/projects/free2bind/ SourceForge]

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==
Adding -h after the perl script will bring up what equates to the man page.

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:16710451'/>
<references/>
[[Category:Bioinformatics Tools]]

free2bind

2010-06-22T21:44:20Z

Lance: New Template:Bioinformatics_Tools Page

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

GLAM

2010-05-11T19:06:02Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://zlab.bu.edu/glam/

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:14704356'/>
<references/>
[[Category:Bioinformatics Tools]]

GLAM

2010-05-11T18:57:07Z

Lance: /* Links */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://zlab.bu.edu/glam/

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

GLAM

2010-05-11T18:56:52Z

Lance: New Template:Bioinformatics_Tools Page

GLAM2

2010-05-11T18:56:06Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}
GLAM2 is a program in the [[MEME]] software suite, which can be used for finding composite or dyad motifs. GLAM2 can be used to find motif in either nucleotide or amino acid sequences, the user must tell GLAM2 which alphabet to use as it does not have either as a default.

GLAM2 (Gapped Local Alignment of Motifs) is built off of [[GLAM]] (Gapless Local Alignment of Multiple sequences), but has clearly moved away from its parent's tree in that is is focused on finding gapped alignments.

== Links ==
Links to sites that run the software or where it can be obtained

*[http://meme.nbcr.net/meme4_3_0/glam2-intro.html Introduction]
*[http://meme.nbcr.net/meme4_3_0/cgi-bin/glam2.cgi Online Submission]
*[http://meme.nbcr.net/meme4_3_0/doc/glam2_tut.html Tutorial]
*[http://meme.nbcr.net/meme4_3_0/doc/examples/glam2_example_output_files/glam2.html Example Output]
*[http://meme.nbcr.net/meme4_3_0/doc/glam2_ref.html Command Line Arguments]
*[http://meme.nbcr.net/meme4_3_0/intro.html MEME Suite Home Page]

== Requirements ==
Hardware/Software requirements, if applicable

GLAM2 is downloaded with the entire MEME Suite and shares [http://meme.nbcr.net/meme4_3_0/doc/meme-install.html#prerequisite requirements].

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

GLAM2

2010-05-11T17:41:03Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}
GLAM2 is a program in the MEME software sweet, which can be used for finding composite or dyad motifs. GLAM2 can be used to find motif in either nucleotide or amino acid sequences, the user must tell GLAM2 which alphabet to use as it does not have either as a default.

GLAM2 (Gapped Local Alignment of Motifs) is built off of [http://zlab.bu.edu/glam/ GLAM] (Gapless Local Alignment of Multiple sequences), but has clearly moved away from its parent's tree in that is is focused on finding gapped alignments.

== Links ==
Links to sites that run the software or where it can be obtained

http://meme.nbcr.net/meme4_3_0/cgi-bin/glam2.cgi

== Requirements ==
Hardware/Software requirements, if applicable

http://meme.nbcr.net/meme4_3_0/doc/meme-install.html#prerequisite

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

Template:Gene

2010-05-10T22:02:38Z

Lance:

__NOTOC__
{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
{{TabsTop}}
{{Tab|Quickview|{{{1}}}}}{{Tab On|Gene|{{{1}}}}}{{Tab|Gene Product(s)|{{{1}}}}}{{Tab|Expression|{{{1}}}}}{{Tab|Evolution|{{{1}}}}}{{Tab|On One Page|{{{1}}}}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
<onlyinclude>
==Nomenclature==
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_nomenclature_table</newTableEdit></protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_location_table</newTableEdit></protect>
===Notes===

==Sequence Features==
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_sequence_features_table</newTableEdit></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_allele_table</newTableEdit></protect>
===Notes===

==Genetic Resources==
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_resource_table</newTableEdit></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_accessions_table</newTableEdit></protect>
===Notes===

==Links==
{{BacktoTop}}
<protect><newTableEdit>Template:Links_table</newTableEdit></protect>

</onlyinclude>

==References==
{{BacktoTop}}
{{RefHelp}}
<references/>

===Categories===

thrA:Gene

2010-05-10T17:35:46Z

Lance: Table edited by Lance via TableEdit

Template:Gene sequence features table

2010-05-10T17:34:50Z

Lance:

<headings>
Feature Type||feature_type|select| |Attenuator (SO:0000140) |Coding End (SO:0000327) |Coding Start (SO:0000323) |Exon (SO:0000147) |Frameshift (SO:0000865) |Intron (SO:0000188) |mRNA (SO:0000234) |ncRNA (SO:0000655) |Promoter (SO:0000167) |Protein Binding Site (SO:0000410) |rRNA (SO:0000252) |Shine-Dalgarno Sequence (SO:0000552) |Splice Site (SO:0000162) |Terminator (SO:0000141) |tmRNA (SO:0000584) |Transcription End Site (SO:0000616) |Transcription Factor Binding Site (SO:0000235) |Transcription Start Site (SO:0000315) |tRNA (SO:0000253) |
Strain||strain|strains_lookup
Genomic Location||location|coordinates
Evidence||evidence|select| |Edman degradation|other
Reference||reference
Notes||notes
</headings>
<type>0</type>
<heading_style>{{table_heading_style}}</heading_style>
<above>{{Gene_sequence_features_help}}</above>
<help1>{{Gene_sequence_features_help}}</help1>

Phage MS2

2010-05-10T16:40:15Z

Lance:

Bacteriophage MS2

Full sequence available from NCBI at [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=176120924 NC_001417]
== Morphology ==

== Genome Organization ==
3569 bases of ssRNA, linear, (+) strand

4 genes encoded; gene order: A (maturation), coat, lysis (overlaps both coat and rep genes), rep (replicase)

== Life cycle ==

==== Adsorption and Injection ====
Absorbs to F pilus of ''E. coli'' <ref name='PMID:14417842 '/>

==== RNA replication ====
* Requires the MS2-encoded protein, Replicase, as well as 3 host proteins: EF-Ts, EF-Tu & ribosomal protein S1 <ref name='PMID:4573038'/><ref name='PMID:4592692'/><ref name='PMID:4624757'/>
** Produces (-) strands that are complementary to the packaged strand and (+) strands, which serve as the template mRNA for translation of the MS2 proteins & is also packaged <ref name='PMID:17775172'/><ref name='PMID:5969764 '/>
** Replicase is extremely error-prone relative to DNA replication machinery
* MS2 does NOT require Hfq, unlike Qbeta

==== Packaging ====
* T=3 morphology, with 180 copies of coat and addition of a single copy of A protein
* Packaging of RNA genome is proposed to begin with aggregation of coat protein at specific regions of the genome

==== Lysis ====
* The L protein is necessary and sufficient to elicit lysis of ''E. coli'' <ref name='PMID:498271'/><ref name='PMID: 498270'/><ref name='PMID:387256'/>

== See also ==

== Notes ==
In the July 17, 2008 RefSeq release from NCBI the taxon ID changed from 12022 to 329852. [http://www.ncbi.nlm.nih.gov/sviewer/girevhist.cgi?val=NC_001417&log$=seqview Click here] see for yourself.

== References ==
{{RefHelp}}
<references/>

recA:Gene Product(s)

2010-04-29T14:22:42Z

Lance: Table edited by Lance via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|recA}}{{Tab|Gene|recA}}{{Tab On|Gene Product(s)|recA}}{{Tab|Expression|recA}}{{Tab|Evolution|recA}}{{Tab|On One Page|recA}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{|{{Prettytable}} id="O46aab7b8421b9" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
RecA
|-
!align=left {{table heading style}} |Synonyms
||
B2699<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tif<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UmuB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Zab<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Srf<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RnmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LexB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease<ref name='LIB:EcoCyc10.6'/>; DNA strand exchange and recombination protein with protease and nuclease activity<ref name='LIB:EcoCyc11.1'/>

General recombination and DNA repair; pairing and strand exchange; role in cleavage of LexA repressor, SOS mutagenesis<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.99.37 3.4.99.37]<ref name='LIB:Riley_2006'/>

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="I46aab7b96871f" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0017111
|
nucleoside-triphosphatase activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR003593
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0009432
|
SOS response
|
GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0742 HAMAP:MF_00268
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0008094
|
DNA-dependent ATPase activity
|
GO_REF:0000002 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001553 HAMAP:MF_00268
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0006974
|
response to DNA damage stimulus
|
GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0227 HAMAP:MF_00268
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0006950
|
response to stress
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0346
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0006310
|
DNA recombination
|
GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0233 HAMAP:MF_00268
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0006281
|
DNA repair
|
GO_REF:0000004 GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0234 SP_KW:KW-0742 HAMAP:MF_00268
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0006259
|
DNA metabolic process
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|

|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0005524
|
ATP binding
|
GO_REF:0000002 GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001553 SP_KW:KW-0067 HAMAP:MF_00268
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0003697
|
single-stranded DNA binding
|
GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00268
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0003684
|
damaged DNA binding
|
GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00268
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001553 SP_KW:KW-0238
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0000166
|
nucleotide binding
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR003593 SP_KW:KW-0547
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0006508
|
proteolysis
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|
Under review
|
GO:0008233
|
peptidase activity
|

|

|

|
F
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required field missing
|-
|

|
GO:0006974
|
response to DNA damage stimulus
|
PMID:10760155
|
IEP: Inferred from Expression Pattern
|

|
P
|

|
complete

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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="K46aab7eb5a263" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
napC 
|

|
PMID:16606699
|
Experiment(s):EBI-1143694 
|-
|
Protein
|
rplJ 
|

|
PMID:16606699
|
Experiment(s):EBI-1143694 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1143694 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1143694 
|-
|
Protein
|
yfiR 
|

|
PMID:16606699
|
Experiment(s):EBI-1143694 

|- class="tableEdit_footer"
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</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="B46aab7ec209b4" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
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|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="N46aab7ed4511a" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG10823-MONOMER at EcoCyc]
<pre>MAIDENKQKA LAAALGQIEK QFGKGSIMRL GEDRSMDVET ISTGSLSLDI ALGAGGLPMG
RIVEIYGPES SGKTTLTLQV IAAAQREGKT CAFIDAEHAL DPIYARKLGV DIDNLLCSQP
DTGEQALEIC DALARSGAVD VIVVDSVAAL TPKAEIEGEI GDSHMGLAAR MMSQAMRKLA
GNLKQSNTLL IFINQIRMKI GVMFGNPETT TGGNALKFYA SVRLDIRRIG AVKEGENVVG
SETRVKVVKN KIAAPFKQAE FQILYGEGIN FYGELVDLGV KEKLIEKAGA WYSYKGEKIG
QGKANATAWL KDNPETAKEI EKKVRELLLS NPNSTPDFSV DDSEGVAETN EDF</pre>
|-
!align=left {{table heading style}} |Length
||
353
|-
!align=left {{table heading style}} |Mol. Wt
||
37.974 kDa
|-
!align=left {{table heading style}} |pI
||
5.0 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
21,430 - 21,805 (calc based on 7 Y, 2 W, and 3 C residues)

|- class="tableEdit_footer"
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|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="F46aab7edb4c80" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A7G6#section_features UniProt:P0A7G6]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.F46aab7edb4c80&page=25711&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="L46aab7ee1eae1" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=recA
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.L46aab7ee1eae1&page=25711&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="Q46aab7f0ee79c" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.Q46aab7f0ee79c&page=25711&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="L46aab7f158f4d" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10823-MONOMER EcoCyc:EG10823-MONOMER]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A7G6|UniProt:P0A7G6]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.sanger.ac.uk/family?acc=PF00154 PFAM:PF00154]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417179 RefSeq:NP_417179]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.L46aab7f158f4d&page=25711&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Z46aab7f4b719f" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.Z46aab7f4b719f&page=25711&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006310_!_DNA recombination]][[Category:GO:0006281_!_DNA repair]][[Category:GO:0006508_!_proteolysis]][[Category:GO:0009432_!_SOS response]][[Category:GO:0008233_!_peptidase activity]][[Category:Products with structures in PDB]]

PMID:12490723

2010-04-13T19:20:33Z

Lance: Fill PMID: Page!

{{RightTOC}}
<protect>
 '''Sinha, S and Tompa, M''' (2002) Discovery of novel transcription factor binding sites by statistical overrepresentation.''Nucleic Acids Res.'' '''30''':5549-60

{|{{Prettytable}} align = 'center' width= '70%'
|-
|{{TableHeadingColor}} |'''Abstract''' || <protect>Understanding the complex and varied mechanisms that regulate gene expression is an important and challenging problem. A fundamental sub-problem is to identify DNA binding sites for unknown regulatory factors, given a collection of genes believed to be co-regulated. We discuss a computational method that identifies good candidates for such binding sites. Unlike local search techniques such as expectation maximization and Gibbs samplers that may not reach a global optimum, the method discussed enumerates all motifs in the search space, and is guaranteed to produce the motifs with greatest z-scores. We discuss the results of validation experiments in which this algorithm was used to identify candidate binding sites in several well studied regulons of Saccharomyces cerevisiae, where the most prominent transcription factor binding sites are largely known. We then discuss the results on gene families in the functional and mutant phenotype catalogs of S.cerevisiae, where the algorithm suggests many promising novel transcription factor binding sites. The program is available at http://bio.cs.washington.edu/software.html.</protect>
|-
|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12490723 PubMed] 
|}
</protect>
==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
<protect>

{| id="R4bc4c4014bc02" class=" tableEdit GO_table_reference"
|- {{table heading style}}
!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.171751.R4bc4c4014bc02&page=171751&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_reference edit table] || || || || || || || ||
|}
</protect>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==See also==

==References==
{{RefHelp}}
<references/>

PMID:12490723

2010-04-13T19:20:33Z

Lance: New PMID: Page!

PMID:14962923

2010-04-13T19:20:14Z

Lance: Fill PMID: Page!

{{RightTOC}}
<protect>
 '''Jensen, ST and Liu, JS''' (2004) BioOptimizer: a Bayesian scoring function approach to motif discovery.''Bioinformatics'' '''20''':1557-64

{|{{Prettytable}} align = 'center' width= '70%'
|-
|{{TableHeadingColor}} |'''Abstract''' || <protect>MOTIVATION: Transcription factors (TFs) bind directly to short segments on the genome, often within hundreds to thousands of base pairs upstream of gene transcription start sites, to regulate gene expression. The experimental determination of TFs binding sites is expensive and time-consuming. Many motif-finding programs have been developed, but no program is clearly superior in all situations. Practitioners often find it difficult to judge which of the motifs predicted by these algorithms are more likely to be biologically relevant. RESULTS: We derive a comprehensive scoring function based on a full Bayesian model that can handle unknown site abundance, unknown motif width and two-block motifs with variable-length gaps. An algorithm called BioOptimizer is proposed to optimize this scoring function so as to reduce noise in the motif signal found by any motif-finding program. The accuracy of BioOptimizer, which can be used in conjunction with several existing programs, is shown to be superior to using any of these motif-finding programs alone when evaluated by both simulation studies and application to sets of co-regulated genes in bacteria. In addition, this scoring function formulation enables us to compare objectively different predicted motifs and select the optimal ones, effectively combining the strengths of existing programs. AVAILABILITY: BioOptimizer is available for download at www.fas.harvard.edu/~junliu/BioOptimizer/</protect>
|-
|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14962923 PubMed] Online version:[http://dx.doi.org/10.1093/bioinformatics/bth127 10.1093/bioinformatics/bth127]
|}
</protect>
==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
<protect>

{| id="K4bc4c3ee65386" class=" tableEdit GO_table_reference"
|- {{table heading style}}
!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.171750.K4bc4c3ee65386&page=171750&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_reference edit table] || || || || || || || ||
|}
</protect>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==See also==

==References==
{{RefHelp}}
<references/>

PMID:14962923

2010-04-13T19:20:14Z

Lance: New PMID: Page!

BioOptimizer

2010-04-13T19:20:10Z

Lance: /* References */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://ai.stanford.edu/~xsliu/BioProspector/

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:14962923'/>

<references/>
[[Category:Bioinformatics Tools]]

BioProspector

2010-04-13T19:19:02Z

Lance: /* References */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://ai.stanford.edu/~xsliu/BioProspector/

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:11262934'/>

<references/>
[[Category:Bioinformatics Tools]]

BioProspector

2010-04-13T19:18:03Z

Lance: /* References */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://ai.stanford.edu/~xsliu/BioProspector/

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

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== References ==
{{RefHelp}}
<references/>
<ref name='PMID:11262934'/>
[[Category:Bioinformatics Tools]]

PMID:12824371

2010-04-13T19:08:34Z

Lance: Fill PMID: Page!

{{RightTOC}}
<protect>
 '''Sinha, S and Tompa, M''' (2003) YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation.''Nucleic Acids Res.'' '''31''':3586-8

{|{{Prettytable}} align = 'center' width= '70%'
|-
|{{TableHeadingColor}} |'''Abstract''' || <protect>A fundamental challenge facing biologists is to identify DNA binding sites for unknown regulatory factors, given a collection of genes believed to be coregulated. The program YMF identifies good candidates for such binding sites by searching for statistically overrepresented motifs. More specifically, YMF enumerates all motifs in the search space and is guaranteed to produce those motifs with greatest z-scores. This note describes the YMF web software, available at http://bio.cs.washington.edu/software.html.</protect>
|-
|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12824371 PubMed] 
|}
</protect>
==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
<protect>

{| id="A4bc4c132409ab" class=" tableEdit GO_table_reference"
|- {{table heading style}}
!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.171749.A4bc4c132409ab&page=171749&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_reference edit table] || || || || || || || ||
|}
</protect>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==See also==

==References==
{{RefHelp}}
<references/>

PMID:12824371

2010-04-13T19:08:34Z

Lance: New PMID: Page!

YMF (bioinformatics program)

2010-04-13T19:08:24Z

Lance: /* References */

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://wingless.cs.washington.edu/YMF/YMFWeb/YMFInput.pl

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

== See Also ==

== References ==
{{RefHelp}}
<ref name='PMID:12824371'/>
<ref name='PMID:12490723'/>

<references/>
[[Category:Bioinformatics Tools]]

YMF (bioinformatics program)

2010-04-06T21:49:59Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

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== Requirements ==
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{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

YMF (bioinformatics program)

2010-04-06T21:49:23Z

Lance: Created page with '{{subst:Bioinformatics_Tools}}'

Category:ymf genes

2010-04-06T21:47:59Z

Lance:

This Category deals with E. coli genes titled ymf. For other uses:

* [[YMF (bioinformatics program)]].

BioOptimizer

2010-04-06T21:20:56Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

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== Requirements ==
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== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

BioOptimizer

2010-04-06T21:20:45Z

Lance: New Template:Bioinformatics_Tools Page

BioProspector

2010-04-06T21:17:47Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://ai.stanford.edu/~xsliu/BioProspector/

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

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== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

BioProspector

2010-04-06T21:17:36Z

Lance: New Template:Bioinformatics_Tools Page

FIMO

2010-04-06T21:14:43Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

== Links ==
Links to sites that run the software or where it can be obtained

http://meme.nbcr.net/meme4_3_0/cgi-bin/fimo.cgi

== Requirements ==
Hardware/Software requirements, if applicable

== User notes ==

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== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

FIMO

2010-04-06T21:14:29Z

Lance: New Template:Bioinformatics_Tools Page

GLAM2SCAN

2010-04-06T21:13:57Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

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== Requirements ==
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== References ==
{{RefHelp}}
<references/>
[[Category:Bioinformatics Tools]]

GLAM2SCAN

2010-04-06T21:13:21Z

Lance: New Template:Bioinformatics_Tools Page

GLAM2

2010-04-06T21:12:44Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

== Short Description ==
{{UserContentHelp}}

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== Requirements ==
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{{RefHelp}}
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[[Category:Bioinformatics Tools]]

GLAM2

2010-04-06T21:12:35Z

Lance: New Template:Bioinformatics_Tools Page

GOMO

2010-04-06T21:12:10Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

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{{RefHelp}}
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[[Category:Bioinformatics Tools]]

GOMO

2010-04-06T21:12:01Z

Lance: New Template:Bioinformatics_Tools Page

TOMTOM

2010-04-06T21:11:25Z

Lance:

{{Pagetop}} 
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TOMTOM

2010-04-06T21:11:10Z

Lance: New Template:Bioinformatics_Tools Page

MAST

2010-04-06T21:10:40Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

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[[Category:Bioinformatics Tools]]

MAST

2010-04-06T21:09:53Z

Lance: New Template:Bioinformatics_Tools Page

MEME

2010-04-06T21:09:43Z

Lance:

{{Pagetop}} 
{{See|Help:Bioinformatics Tools|tools}}

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MEME

2010-04-06T21:08:08Z

Lance: New Template:Bioinformatics_Tools Page

PMID:18940859

2010-02-01T21:41:18Z

Lance: Fill PMID: Page!

{{RightTOC}}
<protect>
 '''Walter, MC, Rattei, T, Arnold, R, Güldener, U, Münsterkötter, M, Nenova, K, Kastenmüller, G, Tischler, P, Wölling, A, Volz, A, Pongratz, N, Jost, R, Mewes, HW and Frishman, D''' (2009) PEDANT covers all complete RefSeq genomes.''Nucleic Acids Res.'' '''37''':D408-11

{|{{Prettytable}} align = 'center' width= '70%'
|-
|{{TableHeadingColor}} |'''Abstract''' || <protect>The PEDANT genome database provides exhaustive annotation of nearly 3000 publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins by a broad set of bioinformatics algorithms. In particular, all completely sequenced genomes from the NCBI's Reference Sequence collection (RefSeq) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of precalculated similarity information stored in the similarity matrix of proteins (SIMAP) database, making it possible to process newly sequenced genomes immediately as they become available. PEDANT is freely accessible to academic users at http://pedant.gsf.de. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.</protect>
|-
|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18940859 PubMed] Online version:[http://dx.doi.org/10.1093/nar/gkn749 10.1093/nar/gkn749]
|}
</protect>
==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

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{{LitMaterials}}

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<protect>

{| id="H4b674a7e81fd1" class=" tableEdit GO_table_reference"
|- {{table heading style}}
!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.170438.H4b674a7e81fd1&page=170438&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_reference edit table] || || || || || || || ||
|}
</protect>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

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==References==
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<references/>

PMID:18940859

2010-02-01T21:41:18Z

Lance: New PMID: Page!

PMID:19775114

2010-02-01T21:38:46Z

Lance: Fill PMID: Page!

{{RightTOC}}
<protect>
 '''Franck, J, El Ayed, M, Wisztorski, M, Salzet, M and Fournier, I''' (2009) On-tissue N-terminal peptide derivatizations for enhancing protein identification in MALDI mass spectrometric imaging strategies.''Anal. Chem.'' '''81''':8305-17

{|{{Prettytable}} align = 'center' width= '70%'
|-
|{{TableHeadingColor}} |'''Abstract''' || <protect>Matrix-assisted laser desorption/ionization (MALDI) is a new tool that can acquire the localization of various compounds, including peptides and proteins, directly from tissue sections. Despite the important developments recently performed in the field of MALDI imaging in tissue, the precise identification of compounds still needs improvement. We have developed N-terminal chemical derivatization strategies to improve tissue identification of proteins, including de novo sequencing performance. We have first focused on sulfonation agents, such as 4-SPITC and 3-SBASE. These two derivatizations were optimized to be performed directly on tissue sections. By adding a negative charge at the N-terminus of a tryptic digest peptide, we were able to generate a complete y fragment series directly from the tissue. Of these derivatizations, 3-SBASE has shown to be more efficient, as loss of the derivative group is one of the major fragmentation pathways for 4-SPITC. 3-SBASE was optimized so that the derivatization reaction could be automatically performed using an automatic microspotting device. It was then included in an automatic process that included automated trypsin digestion and matrix deposition. Derivatizations allowed the acquisition to be easily interpretable by MS(2) spectra, leading to very precise identification as well as easy manual reading of sequences for de novo sequencing. It was observed that only arginine-terminated peptides were observed after derivatization, likely due to the high gas-phase basicity of such peptides compared to those that are lysine-terminated. We also observed a stop in the y fragmentation series for peptides presenting a miscleavage. We have now begun to study a different derivatization using N-succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP). This derivatization allows the orientating of a fragmentation toward a series of fragment ions, and thus it is independent of the presence of basic residues in the sequence. This derivatization can be performed at room temperature, which greatly facilitates the automation of the process. The TMPP derivatization therefore yields an advantageous new generation of derivatives suited for use in tissue.</protect>
|-
|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19775114 PubMed] Online version:[http://dx.doi.org/10.1021/ac901043n 10.1021/ac901043n]
|}
</protect>
==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
<protect>

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|- {{table heading style}}
!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.170437.B4b6749e610b80&page=170437&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_reference edit table] || || || || || || || ||
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</protect>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==See also==

==References==
{{RefHelp}}
<references/>

PMID:19775114

2010-02-01T21:38:45Z

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